Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000153165 |
| Gene: | RGPD3 | Gene type: | protein_coding |
| Strand: | - | External links: |
|
| Genomic region: | chr2:106391290-106468413 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_139200599 | chr2:106478107-106522162 |
Sample_02_1392 | Peripheral blood | Mac-2A_ALK- | 599 | 11 | 1170 | 99 | 1 | 43 | 0 | RGPD3 |
| SE_00_004500166 | chr2:106479981-106515119 |
Sample_00_0045 | Thymus | thymus | 166 | 10 | 893 | 81 | 1 | 43 | 0 | RGPD3,UXS1 |
| SE_02_034800276 | chr2:106480365-106515026 |
Sample_02_0348 | Peripheral blood | CUTLL1_wild-type | 276 | 6 | 876 | 81 | 1 | 43 | 0 | RGPD3,UXS1 |
| SE_02_012800339 | chr2:106480610-106514910 |
Sample_02_0128 | Haematopoietic and lymphoid tissue | ALL-SIL | 339 | 12 | 863 | 78 | 1 | 43 | 0 | RGPD3 |
| SE_02_003500201 | chr2:106480853-106515249 |
Sample_02_0035 | Peripheral blood | CUTLL1_GSI_wash | 201 | 9 | 867 | 79 | 1 | 43 | 0 | RGPD3 |
| SE_02_034900336 | chr2:106480861-106515000 |
Sample_02_0349 | Peripheral blood | CUTLL1_dimer-mutant | 336 | 6 | 859 | 78 | 1 | 43 | 0 | RGPD3,UXS1 |
| SE_02_003400233 | chr2:106480865-106515123 |
Sample_02_0034 | Peripheral blood | CUTLL1_GSI | 233 | 10 | 863 | 79 | 1 | 43 | 0 | RGPD3 |
| SE_00_000900643 | chr2:106484389-106515249 |
Sample_00_0009 | Blood | CD8-positive-alpha-beta-T-cell | 643 | 5 | 788 | 74 | 1 | 39 | 0 | RGPD3 |
| SE_02_122000190 | chr2:106485893-106543317 |
Sample_02_1220 | Bone marrow | JJN3 | 190 | 23 | 1608 | 108 | 1 | 39 | 0 | RGPD3,UXS1 |
| SE_02_122600052 | chr2:106485967-106539199 |
Sample_02_1226 | Bone marrow | RPMI-8226 | 52 | 28 | 1474 | 100 | 1 | 39 | 0 | RGPD3 |
| SE_02_111900394 | chr2:106486060-106547866 |
Sample_02_1119 | Blood | KBM7 | 394 | 33 | 1726 | 116 | 1 | 39 | 0 | RGPD3 |
| SE_02_104602046 | chr2:106486206-106516259 |
Sample_02_1046 | Peripheral blood | CD4+ cells_CTCL1145 | 2046 | 15 | 781 | 74 | 1 | 39 | 0 | RGPD3,UXS1 |
| SE_02_002200173 | chr2:106486218-106515048 |
Sample_02_0022 | Blood | CD8donorA | 173 | 18 | 742 | 69 | 1 | 39 | 0 | RGPD3,UXS1 |
| SE_02_002300202 | chr2:106486259-106514141 |
Sample_02_0023 | Blood | CD8donorC | 202 | 19 | 708 | 64 | 1 | 39 | 0 | RGPD3,UXS1 |
| SE_02_033000667 | chr2:106487622-106512241 |
Sample_02_0330 | Endoderm | MHG | 667 | 5 | 633 | 58 | 1 | 33 | 0 | RGPD3,UXS1 |
| SE_02_072900408 | chr2:106491860-106521487 |
Sample_02_0729 | Lymphoma | I10_Mantle cell lymphoma tissue_THZ1 | 408 | 15 | 800 | 71 | 1 | 32 | 0 | RGPD3 |
| SE_02_122100104 | chr2:106491916-106538077 |
Sample_02_1221 | Bone marrow | KMS11 | 104 | 19 | 1285 | 87 | 1 | 32 | 0 | RGPD3 |
| SE_02_072800512 | chr2:106492188-106522284 |
Sample_02_0728 | Lymphoma | I10_Mantle cell lymphoma tissue_DMSO | 512 | 13 | 822 | 72 | 1 | 32 | 0 | RGPD3 |
| SE_02_011900134 | chr2:106492514-106515068 |
Sample_02_0119 | Haematopoietic and lymphoid tissue | PFEIFFER | 134 | 20 | 585 | 57 | 1 | 32 | 0 | RGPD3,UXS1 |
| SE_02_073300581 | chr2:106493165-106537890 |
Sample_02_0733 | Lymphoma | L20_Mantle cell lymphoma tissue_THZ1 | 581 | 10 | 1242 | 87 | 1 | 32 | 0 | RGPD3 |
| SE_02_073100369 | chr2:106495643-106538310 |
Sample_02_0731 | Lymphoma | J4_Mantle cell lymphoma tissue_THZ1 | 369 | 10 | 1209 | 81 | 1 | 32 | 0 | RGPD3 |
| SE_02_073000337 | chr2:106495698-106538368 |
Sample_02_0730 | Lymphoma | J4_Mantle cell lymphoma tissue_DMSO | 337 | 8 | 1210 | 81 | 1 | 32 | 0 | RGPD3 |
| SE_02_022600244 | chr2:106495704-106515558 |
Sample_02_0226 | Blood | KOPTK1 | 244 | 1 | 524 | 53 | 1 | 32 | 0 | RGPD3,UXS1 |
| SE_02_138800202 | chr2:106496205-106516053 |
Sample_02_1388 | Peripheral blood | JB6_ALK+ | 202 | 6 | 524 | 53 | 1 | 31 | 0 | RGPD3,PLGLA |
| SE_02_073200592 | chr2:106496236-106538588 |
Sample_02_0732 | Lymphoma | L20_Mantle cell lymphoma tissue_DMSO | 592 | 10 | 1201 | 80 | 1 | 31 | 0 | RGPD3,UXS1 |
| SE_01_004200335 | chr2:106496310-106510830 |
Sample_01_0042 | Haematopoietic and lymphoid tissue | KMS-11 | 335 | 2 | 368 | 35 | 1 | 12 | 0 | RGPD3,UXS1 |
| SE_02_066900404 | chr2:106542933-106582451 |
Sample_02_0669 | Prostate | prostate cancer_DSG | 404 | 14 | 1246 | 89 | 1 | 0 | 0 | RGPD3,ST6GAL2 |
| SE_02_129900219 | chr2:106542943-106582652 |
Sample_02_1299 | Liver | liver | 219 | 13 | 1257 | 90 | 1 | 0 | 0 | RGPD3,UXS1 |
| SE_02_129600152 | chr2:106542946-106582680 |
Sample_02_1296 | Perigastric lymph node | Perigastric lymph node | 152 | 12 | 1257 | 90 | 1 | 0 | 0 | RGPD3,UXS1 |
| SE_02_129800137 | chr2:106542978-106582473 |
Sample_02_1298 | Hilar lymph node | Hilar lymph node | 137 | 12 | 1246 | 89 | 1 | 0 | 0 | RGPD3,UXS1 |
| SE_02_067300527 | chr2:106543004-106580000 |
Sample_02_0673 | Prostate | LNCAP_FA | 527 | 8 | 1173 | 85 | 1 | 0 | 0 | RGPD3,UXS1 |
| SE_02_129700162 | chr2:106543028-106582675 |
Sample_02_1297 | Lung | lung | 162 | 14 | 1253 | 90 | 1 | 0 | 0 | RGPD3,UXS1 |
| SE_02_016800324 | chr2:106546363-106580576 |
Sample_02_0168 | Prostate | LNCaP | 324 | 5 | 1091 | 78 | 1 | 0 | 0 | RGPD3,UXS1 |
| SE_02_140700631 | chr2:106557921-106580427 |
Sample_02_1407 | Prostate | LNCaP_R1881 4h | 631 | 6 | 702 | 57 | 1 | 0 | 0 | RGPD3 |
| SE_02_016300446 | chr2:106557971-106562166 |
Sample_02_0163 | Prostate | C4-2B_SR2211_24h | 446 | 5 | 140 | 14 | 0 | 0 | 0 | RGPD3,NCK2 |
Genomic distribution of SEs associated with RGPD3