SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000196460
Gene: RFX8 Gene type: protein_coding
Strand: - External links:
Genomic region: chr2:101397359-101475112 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_045100054 chr2:101394878-101474111 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 54 25 2259 311 7 102 775 RFX8,CREG2
SE_02_127900145 chr2:101395221-101479433 Sample_02_1279 Bone Mesenchymal stem cells 145 14 2392 326 7 131 880 RFX8,CREG2
SE_02_132000026 chr2:101395639-101477320 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 26 25 2329 322 7 111 880 RFX8,CREG2
SE_02_104602409 chr2:101397918-101482142 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2409 21 2403 329 7 130 819 RFX8,CREG2
SE_02_003500180 chr2:101415650-101486584 Sample_02_0035 Peripheral blood CUTLL1_GSI_wash 180 26 2034 308 6 100 485 RFX8,CREG2
SE_02_127600129 chr2:101417959-101469614 Sample_02_1276 Prostate PC3_GSK126 129 33 1517 266 6 59 309 RFX8,CREG2
SE_02_011600540 chr2:101418308-101465380 Sample_02_0116 Mammary gland MDA-MB-231_untreat 540 6 1375 259 6 54 255 RFX8,CREG2
SE_02_034800655 chr2:101418356-101448662 Sample_02_0348 Peripheral blood CUTLL1_wild-type 655 8 857 144 2 22 174 RFX8,CREG2
SE_02_076900166 chr2:101418703-101476755 Sample_02_0769 Ovary HEYA8 166 23 1689 288 6 72 408 RFX8,CREG2
SE_02_153600249 chr2:101419134-101449278 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 249 9 851 145 3 22 118 RFX8,CREG2
SE_02_153700229 chr2:101419235-101465596 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 229 10 1358 258 6 53 197 RFX8,CREG2
SE_02_086700271 chr2:101419273-101480375 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 271 37 1764 291 6 93 356 RFX8,CREG2
SE_02_131100272 chr2:101419321-101476333 Sample_02_1311 Bone marrow HDMSCs 272 13 1658 283 6 71 356 RFX8,CREG2
SE_02_143700837 chr2:101419443-101477290 Sample_02_1437 Liver LSEC-TNF 837 12 1685 286 6 71 356 RFX8,CREG2
SE_02_144500102 chr2:101419469-101529037 Sample_02_1445 Adipose SW872_TAZ4SA 102 27 3144 394 7 154 356 RFX8,CREG2
SE_02_003100281 chr2:101420416-101481501 Sample_02_0031 Haematopoietic and lymphoid tissue blood Jurkat 281 9 1764 289 5 93 356 RFX8,CREG2
SE_02_143100470 chr2:101421764-101480237 Sample_02_1431 Blood T cell 470 14 1701 287 5 89 335 RFX8,CREG2
SE_02_156601003 chr2:101430677-101449859 Sample_02_1566 Dermal Dermal fibroblast 1003 8 517 126 4 16 0 RFX8,CREG2
SE_02_141800043 chr2:101431365-101470051 Sample_02_1418 Brain SF9427 43 8 1120 238 5 48 135 RFX8,CREG2
SE_02_150600227 chr2:101431548-101478623 Sample_02_1506 Brain SHEP with tetracycline inducible MYC_DOX_6HR 227 15 1354 265 5 78 240 RFX8,CREG2
SE_02_126300372 chr2:101431954-101472465 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 372 10 1183 244 5 48 135 RFX8,CREG2
SE_02_103400536 chr2:101432070-101476866 Sample_02_1034 Blood AML cell 536 9 1296 261 5 61 240 RFX8,CREG2
SE_02_005400122 chr2:101432431-101476523 Sample_02_0054 Lung IMR-90_DMSO_1 122 9 1270 255 5 61 240 RFX8,CREG2
SE_02_131000287 chr2:101432434-101476341 Sample_02_1310 Bone marrow ASMSCs 287 13 1268 253 5 61 240 RFX8,CREG2
SE_02_153400075 chr2:101432725-101466794 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 75 8 990 229 5 45 101 RFX8,CREG2,MIR5696
SE_02_156800756 chr2:101432741-101448371 Sample_02_1568 Heart Cardiac progenitor cells 756 4 425 112 1 10 0 RFX8,CREG2
SE_02_150500253 chr2:101432890-101464840 Sample_02_1505 Brain SHEP with tetracycline inducible MYC_DOX_2HR 253 11 933 226 5 40 81 RFX8,CREG2
SE_02_127200747 chr2:101432966-101448489 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 747 11 420 112 1 10 0 RFX8,CREG2
SE_02_048100897 chr2:101433329-101466922 Sample_02_0481 Mammary gland MDA-MB231 897 12 965 228 5 47 120 RFX8,CREG2
SE_02_022500405 chr2:101433945-101448441 Sample_02_0225 Haematopoietic and lymphoid tissue PF-382 405 3 384 109 1 4 0 RFX8,CREG2
SE_02_007300256 chr2:101434533-101487074 Sample_02_0073 Other 90-8TL_DMSO 256 15 1487 266 5 92 240 RFX8,CREG2
SE_02_047401252 chr2:101434693-101474213 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1252 11 1144 240 5 44 135 RFX8,CREG2
SE_02_111200367 chr2:101434768-101487580 Sample_02_1112 T lymphocyte THP-6 T-ALL 367 15 1491 265 5 92 240 RFX8,CREG2
SE_02_121600313 chr2:101434823-101455400 Sample_02_1216 Blood Jurkat ZBTB1 KO 313 9 573 159 4 18 81 RFX8,CREG2,CNOT11,MAP4K4
SE_02_050000429 chr2:101434845-101480013 Sample_02_0500 Fetal lung IMR90_#2 429 21 1290 253 5 74 240 RFX8,CREG2
SE_02_121700407 chr2:101438394-101455345 Sample_02_1217 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1_Asparagine deprivation 407 3 467 121 4 16 81 RFX8,CNOT11,MAP4K4
SE_02_121500371 chr2:101438486-101455212 Sample_02_1215 Blood Jurkat ZBTB1 KO_Asparagine deprivation 371 5 460 120 4 16 81 RFX8,CNOT11,MAP4K4
SE_02_121400296 chr2:101438508-101455287 Sample_02_1214 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1 296 4 461 120 4 16 81 RFX8,CNOT11,MAP4K4
SE_02_143600972 chr2:101439740-101477387 Sample_02_1436 Liver LSEC-Ctrl 972 11 1077 195 5 50 240 RFX8
SE_02_153500250 chr2:101441112-101449643 Sample_02_1535 Mammary gland MDA-MB-231_ER?WT_45min 250 5 183 38 4 1 0 RFX8
SE_02_132200076 chr2:101441146-101477407 Sample_02_1322 Connective Tissue HT1080_WT 76 20 1021 178 5 50 240 RFX8
SE_02_011200885 chr2:101441199-101449491 Sample_02_0112 Connective tissue HT1080_untreated 885 2 180 37 3 1 0 RFX8
SE_02_041900578 chr2:101441571-101470269 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 578 14 811 153 5 37 135 RFX8
SE_02_108000402 chr2:101460023-101481320 Sample_02_1080 Muscle JR1 shCtrl 402 9 604 74 1 56 159 RFX8
SE_02_086900414 chr2:101460028-101477340 Sample_02_0869 Fibroblast VH10_NO_UV 414 13 506 69 1 34 159 RFX8
SE_02_094900170 chr2:101461385-101561491 Sample_02_0949 Umbilical artery HUAEC_WT 170 31 2810 212 2 141 159 RFX8
SE_02_084000751 chr2:101462648-101486866 Sample_02_0840 Embryo hNPCs_R1159Q/+ 751 5 664 69 1 73 159 RFX8
SE_02_005500317 chr2:101462701-101476395 Sample_02_0055 Lung IMR-90_Nutlin-3a 317 3 385 50 1 34 159 RFX8
SE_02_018200398 chr2:101462861-101477379 Sample_02_0182 melanoma LOX-IMVI 398 5 411 50 1 34 159 RFX8
SE_02_025600756 chr2:101462902-101478435 Sample_02_0256 Peripheral blood MV411 756 3 438 52 1 51 159 RFX8
SE_02_156600755 chr2:101462919-101476361 Sample_02_1566 Dermal Dermal fibroblast 755 6 380 47 1 34 159 RFX8
SE_02_156800788 chr2:101462985-101487434 Sample_02_1568 Heart Cardiac progenitor cells 788 4 672 64 1 73 159 RFX8
SE_02_119900780 chr2:101463041-101481049 Sample_02_1199 Brain GBM35 780 6 499 53 1 56 159 RFX8
SE_02_043700418 chr2:101463083-101476771 Sample_02_0437 Bone 143B 418 7 386 48 1 34 159 RFX8
SE_02_063800972 chr2:101463268-101475192 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 972 6 348 40 1 34 159 RFX8
SE_02_046100588 chr2:101463304-101475995 Sample_02_0461 Blood MV-4-11-B cells 588 4 368 43 1 34 159 RFX8
SE_02_057500849 chr2:101463326-101476796 Sample_02_0575 Blood MOLM13_sgLKB1e2 849 6 380 45 1 34 159 RFX8
SE_02_127200753 chr2:101463379-101474453 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 753 3 318 34 1 34 54 RFX8
SE_02_109800930 chr2:101463396-101477613 Sample_02_1098 Blood THP1_DMSO_noPMA 930 5 405 46 1 37 159 RFX8
SE_02_057800816 chr2:101463704-101476865 Sample_02_0578 Blood MOLM-13_sgSIK3e4 816 3 367 40 1 34 159 RFX8
SE_02_019700183 chr2:101466321-101479218 Sample_02_0197 Stomach SNU1750 183 3 360 33 0 37 159 RFX8
SE_02_123700197 chr2:101467190-101481333 Sample_02_1237 Skin MKL2_virus_positive 197 4 385 31 0 35 105 RFX8
SE_02_099301014 chr2:101468127-101477812 Sample_02_0993 Blood MOLM-13_empty 1014 5 274 27 0 17 105 RFX8
SE_02_121700185 chr2:101469800-101480317 Sample_02_1217 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1_Asparagine deprivation 185 4 280 27 0 35 105 RFX8
SE_02_121600203 chr2:101470156-101480653 Sample_02_1216 Blood Jurkat ZBTB1 KO 203 3 279 27 0 35 105 RFX8
SE_02_121400171 chr2:101471291-101480100 Sample_02_1214 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1 171 3 226 22 0 35 105 RFX8
SE_02_121500208 chr2:101471404-101480246 Sample_02_1215 Blood Jurkat ZBTB1 KO_Asparagine deprivation 208 3 230 22 0 35 105 RFX8
SE_02_141300795 chr2:101496118-101519378 Sample_02_1413 Muscle RH4_sgBRG1 795 7 667 50 1 36 0 RFX8
SE_02_155200827 chr2:101496684-101521016 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 827 8 685 53 1 36 0 RFX8
SE_02_026500630 chr2:101496995-101521494 Sample_02_0265 Skeletal muscle 7250-PAX3-FOXO1 630 2 697 56 1 36 0 RFX8
SE_02_127900892 chr2:101497127-101540473 Sample_02_1279 Bone Mesenchymal stem cells 892 6 1286 78 1 47 0 RFX8
SE_02_108000845 chr2:101497528-101520790 Sample_02_1080 Muscle JR1 shCtrl 845 9 645 52 1 36 0 RFX8
SE_02_123701025 chr2:101497764-101502733 Sample_02_1237 Skin MKL2_virus_positive 1025 2 136 17 0 13 0 RFX8
SE_02_086701414 chr2:101498033-101522016 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 1414 13 689 59 1 36 0 RFX8
SE_02_141001477 chr2:101498307-101541009 Sample_02_1410 Brain GSC6 1477 7 1270 80 1 47 0 RFX8
SE_02_095100453 chr2:101498336-101521311 Sample_02_0951 HMSCs hMSCs 453 11 648 53 1 36 0 RFX8
SE_02_127600294 chr2:101498513-101522074 Sample_02_1276 Prostate PC3_GSK126 294 9 673 58 1 36 0 RFX8
SE_01_005800567 chr2:101499623-101521749 Sample_01_0058 Prostate PC-3 567 2 628 48 1 36 0 RFX8
SE_02_011200845 chr2:101499903-101521609 Sample_02_0112 Connective tissue HT1080_untreated 845 3 616 46 1 36 0 RFX8
SE_02_127100782 chr2:101499920-101521158 Sample_02_1271 Leiomyosarcoma SK-LMS-1_WT 782 4 593 44 1 36 0 RFX8
SE_02_132000634 chr2:101500262-101521648 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 634 7 611 45 1 30 0 RFX8
SE_02_156001456 chr2:101500357-101534448 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1456 10 1057 61 1 34 0 RFX8
SE_02_018200283 chr2:101500646-101522535 Sample_02_0182 melanoma LOX-IMVI 283 3 636 48 1 25 0 RFX8
SE_02_153700425 chr2:101501780-101521461 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 425 4 563 43 1 23 0 RFX8
SE_02_143601406 chr2:101513984-101521455 Sample_02_1436 Liver LSEC-Ctrl 1406 3 210 13 0 14 0 RFX8
SE_02_153500286 chr2:101514378-101521577 Sample_02_1535 Mammary gland MDA-MB-231_ER?WT_45min 286 4 199 12 0 14 0 RFX8
SE_02_153400172 chr2:101514430-101522113 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 172 1 219 15 0 14 0 RFX8,MAP4K4
SE_02_076900750 chr2:101514522-101522248 Sample_02_0769 Ovary HEYA8 750 5 217 15 0 14 0 RFX8
SE_02_150600571 chr2:101514540-101521091 Sample_02_1506 Brain SHEP with tetracycline inducible MYC_DOX_6HR 571 5 172 9 0 14 0 RFX8
SE_02_143801461 chr2:101514559-101521673 Sample_02_1438 Liver LSEC 1461 2 196 11 0 14 0 RFX8
SE_02_153600210 chr2:101514707-101521264 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 210 4 175 9 0 14 0 RFX8
SE_02_132200719 chr2:101514850-101521926 Sample_02_1322 Connective Tissue HT1080_WT 719 3 197 13 0 14 0 RFX8
SE_02_127200796 chr2:101514933-101520997 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 796 8 156 7 0 14 0 RFX8
SE_02_156800520 chr2:101514941-101521314 Sample_02_1568 Heart Cardiac progenitor cells 520 1 170 9 0 14 0 RFX8
SE_02_065201300 chr2:101514954-101521024 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1300 7 156 8 0 14 0 RFX8
SE_02_064901186 chr2:101515312-101521065 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 1186 5 147 9 0 14 0 RFX8
SE_02_049101310 chr2:101515675-101521164 Sample_02_0491 Pharyng Detroit 562-Control 1310 2 139 9 0 14 0 RFX8
Genomic distribution of SEs associated with RFX8
Genome Browser

The strength of the tissue affected by the gene

Expression of RFX8

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)