Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000076201 |
| Gene: | PTPN23 | Gene type: | protein_coding |
| Strand: | + | External links: |
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| Genomic region: | chr3:47381011-47413435 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_103602494 | chr3:47360631-47400791 |
Sample_02_1036 | Mammary gland | HCC70_XY018 | 2494 | 9 | 823 | 52 | 2 | 37 | 194 | PTPN23 |
| SE_02_104300648 | chr3:47363191-47429525 |
Sample_02_1043 | Peripheral blood | Peripheral blood cells_CTCL1200 | 648 | 19 | 1622 | 80 | 5 | 350 | 4278 | SCAP,PTPN23 |
| SE_02_104700420 | chr3:47369961-47435098 |
Sample_02_1047 | Peripheral blood | CD4+ cells_CTCL1181 | 420 | 24 | 1592 | 74 | 4 | 352 | 4314 | SCAP,PTPN23 |
| SE_02_088600468 | chr3:47376018-47422179 |
Sample_02_0886 | Skin | foreskin_ p63KLF4 | 468 | 9 | 1152 | 56 | 2 | 295 | 3626 | SCAP,PTPN23 |
| SE_02_104900502 | chr3:47377153-47447477 |
Sample_02_1049 | Peripheral blood | CD4+ cell_ROMI | 502 | 37 | 1697 | 83 | 3 | 353 | 4419 | SCAP,PTPN23 |
| SE_02_122900738 | chr3:47377155-47425556 |
Sample_02_1229 | Haematopoietic and lymphoid tissue bone marrow | K562_Control | 738 | 21 | 1214 | 59 | 2 | 307 | 3864 | SCAP,PTPN23,KIF9,KLHL18,ELP6,SETD2 |
| SE_02_088401090 | chr3:47378675-47382517 |
Sample_02_0884 | Colon | LoVo | 1090 | 1 | 93 | 4 | 0 | 15 | 127 | PTPN23 |
| SE_00_002001362 | chr3:47378700-47386412 |
Sample_00_0020 | Large intestine | large-intestine_108d | 1362 | 2 | 162 | 9 | 0 | 17 | 127 | PTPN23 |
| SE_00_003601314 | chr3:47378874-47386188 |
Sample_00_0036 | Small intestine | small-intestine_108days | 1314 | 3 | 150 | 8 | 0 | 17 | 127 | PTPN23 |
| SE_02_003200856 | chr3:47379290-47396173 |
Sample_02_0032 | Pancreas | pancreatic-islets-M | 856 | 2 | 318 | 19 | 0 | 25 | 157 | PTPN23 |
| SE_02_004600744 | chr3:47379487-47395507 |
Sample_02_0046 | Embryo endodermal | CyT49_ES_D10 | 744 | 2 | 299 | 17 | 0 | 24 | 127 | PTPN23 |
| SE_01_006900932 | chr3:47384476-47452992 |
Sample_01_0069 | Adrenal gland | adrenal-gland | 932 | 8 | 1634 | 82 | 3 | 337 | 4292 | SCAP,PTPN23 |
| SE_02_117300692 | chr3:47385369-47444314 |
Sample_02_1173 | Brain | GBM01 | 692 | 20 | 1437 | 67 | 3 | 334 | 4292 | SCAP,PTPN23 |
| SE_02_121300675 | chr3:47394403-47443997 |
Sample_02_1213 | Brain | GBM31 | 675 | 16 | 1276 | 58 | 3 | 326 | 4292 | SCAP,PTPN23 |
| SE_02_104601539 | chr3:47395052-47435172 |
Sample_02_1046 | Peripheral blood | CD4+ cells_CTCL1145 | 1539 | 17 | 1090 | 45 | 3 | 321 | 4200 | SCAP,PTPN23 |
| SE_02_114500753 | chr3:47395114-47430927 |
Sample_02_1145 | Peripheral nerve | SNF02.2_PRC2 WT | 753 | 14 | 988 | 42 | 3 | 316 | 4151 | SCAP,PTPN23 |
| SE_02_120301056 | chr3:47395242-47423311 |
Sample_02_1203 | Brain | NB1 | 1056 | 7 | 798 | 34 | 2 | 276 | 3596 | SCAP,PTPN23 |
| SE_02_104800743 | chr3:47395277-47425953 |
Sample_02_1048 | Peripheral blood | CD4+ cell_UNTREATED | 743 | 14 | 868 | 36 | 2 | 286 | 3840 | SCAP,PTPN23 |
| SE_02_101300592 | chr3:47399639-47421482 |
Sample_02_1013 | Brain | Lateral temporal lobe_6T_AD | 592 | 10 | 650 | 22 | 1 | 266 | 3432 | SCAP,PTPN23 |
Genomic distribution of SEs associated with PTPN23