SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000111218
Gene: PRMT8 Gene type: protein_coding
Strand: + External links:
Genomic region: chr12:3381349-3593973 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_110600115 chr12:3167608-3304494 Sample_02_1106 Brain NGP 115 71 4797 274 19 586 2057 TSPAN9,PRMT8
SE_02_092500002 chr12:3171445-3296554 Sample_02_0925 Heart fetal heart_PCW17_12570 2 25 4391 236 19 555 1528 TSPAN9,PRMT8
SE_00_004600012 chr12:3175133-3294742 Sample_00_0046 Heart right ventricle_34y 12 68 4125 223 19 531 1444 TSPAN9,PRMT8
SE_02_088900034 chr12:3175148-3295045 Sample_02_0889 Heart left ventricle_LV1183 34 24 4143 225 19 531 1444 TSPAN9,PRMT8
SE_02_090300016 chr12:3175326-3300874 Sample_02_0903 Heart left ventricle_DCM_LV1009 16 33 4348 247 19 538 2057 TSPAN9,PRMT8
SE_02_089000018 chr12:3175369-3300623 Sample_02_0890 Heart left ventricle_LV1200 18 41 4338 247 19 537 2057 TSPAN9,PRMT8
SE_01_009800008 chr12:3175424-3295908 Sample_01_0098 Heart left ventricle_51y 8 19 4162 227 19 532 1444 TSPAN9,PRMT8
SE_02_074700009 chr12:3175459-3300666 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 9 43 4340 247 19 538 2057 TSPAN9,PRMT8
SE_02_089800022 chr12:3183734-3300751 Sample_02_0898 Heart left ventricle_LV1356 22 35 4058 230 17 487 2057 TSPAN9,PRMT8
SE_02_090100018 chr12:3184309-3301123 Sample_02_0901 Heart left ventricle_LV1471 18 36 4042 230 17 487 2057 TSPAN9,PRMT8
SE_02_089300019 chr12:3184435-3275087 Sample_02_0893 Heart left ventricle_LV1226 19 24 3061 140 14 396 81 TSPAN9,PRMT8
SE_02_088700022 chr12:3184476-3276144 Sample_02_0887 Heart left ventricle_LV1121 22 27 3102 143 14 401 81 TSPAN9,PRMT8
SE_02_091200058 chr12:3184497-3276894 Sample_02_0912 Heart left ventricle_DCM_LV1300 58 27 3133 146 15 402 81 TSPAN9,PRMT8
SE_00_005700011 chr12:3184635-3275440 Sample_00_0057 Heart right ventricle 3y 11 71 3067 140 14 396 81 TSPAN9,PRMT8
SE_02_091900036 chr12:3184680-3275129 Sample_02_0919 Heart left ventricle_DCM_LV1532 36 33 3051 139 14 395 81 TSPAN9,PRMT8
SE_02_090600046 chr12:3184710-3277595 Sample_02_0906 Heart left ventricle_DCM_LV1072 46 32 3144 148 16 405 81 TSPAN9,PRMT8
SE_02_090500021 chr12:3184814-3279279 Sample_02_0905 Heart left ventricle_DCM_LV1033 21 19 3207 156 17 419 296 TSPAN9,PRMT8
SE_02_110500222 chr12:3189338-3343535 Sample_02_1105 Brain NBL-S 222 63 5332 329 18 544 2833 TSPAN9,PRMT8
SE_02_110800187 chr12:3189770-3314338 Sample_02_1108 Brain SK-N-BE_2_-C 187 33 4340 254 15 482 2057 TSPAN9,PRMT8
SE_02_101700960 chr12:3194822-3305023 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 960 24 3856 235 15 451 2057 TSPAN9,PRMT8
SE_02_110100100 chr12:3198844-3342718 Sample_02_1101 Brain KELLY 100 59 5049 322 18 524 2833 TSPAN9,PRMT8
SE_02_093500111 chr12:3199421-3281775 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 111 32 2898 164 15 383 605 TSPAN9,PRMT8
SE_02_054400166 chr12:3199478-3298143 Sample_02_0544 Brain Kelly_ResVeh 166 37 3498 212 15 429 1890 TSPAN9,PRMT8
SE_02_090200019 chr12:3199495-3277636 Sample_02_0902 Heart left ventricle_LV1558 19 31 2734 141 14 355 81 TSPAN9,PRMT8
SE_02_089100020 chr12:3199529-3282299 Sample_02_0891 Heart left ventricle_LV1202 20 29 2915 167 15 390 640 TSPAN9,PRMT8
SE_02_143300914 chr12:3199702-3280596 Sample_02_1433 Bone A673 STAG2 null 914 26 2851 158 15 374 396 TSPAN9,PRMT8
SE_02_090700035 chr12:3199737-3276881 Sample_02_0907 Heart left ventricle_DCM_LV1223 35 23 2704 138 13 347 81 TSPAN9,PRMT8
SE_00_005200011 chr12:3199782-3277052 Sample_00_0052 Heart left ventricle 3y 11 30 2703 138 13 346 81 TSPAN9,PRMT8
SE_02_046200013 chr12:3199873-3277924 Sample_02_0462 Lung NCI-H2171 cells 13 40 2734 142 14 344 81 TSPAN9,PRMT8
SE_02_088800031 chr12:3199874-3282227 Sample_02_0888 Heart left ventricle_LV1160 31 29 2904 167 15 379 640 TSPAN9,PRMT8
SE_02_090900041 chr12:3199877-3275372 Sample_02_0909 Heart left ventricle_DCM_LV1264 41 33 2634 132 12 333 81 TSPAN9,PRMT8
SE_02_089900093 chr12:3199900-3276866 Sample_02_0899 Heart left ventricle_LV1400 93 34 2700 138 13 338 81 TSPAN9,PRMT8
SE_02_089400011 chr12:3199926-3275456 Sample_02_0894 Heart left ventricle_LV1248 11 26 2634 132 12 333 81 TSPAN9,PRMT8
SE_02_091000049 chr12:3199961-3295428 Sample_02_0910 Heart left ventricle_DCM_LV1275 49 38 3394 202 15 416 1444 TSPAN9,PRMT8
SE_02_089600047 chr12:3199969-3300574 Sample_02_0896 Heart left ventricle_LV1294 47 35 3581 221 15 422 2057 TSPAN9,PRMT8
SE_02_091700040 chr12:3200103-3280049 Sample_02_0917 Heart left ventricle_DCM_LV1433 40 34 2811 155 15 358 296 TSPAN9,PRMT8
SE_02_089700071 chr12:3200119-3281755 Sample_02_0897 Heart left ventricle_LV1325 71 26 2875 164 15 371 604 TSPAN9,PRMT8
SE_02_089500020 chr12:3200132-3274336 Sample_02_0895 Heart left ventricle_LV1259 20 31 2588 129 12 332 81 TSPAN9,PRMT8
SE_02_092000049 chr12:3200230-3274432 Sample_02_0920 Heart left ventricle_DCM_LV1535 49 36 2589 130 12 330 81 TSPAN9,PRMT8
SE_02_132000558 chr12:3200282-3273905 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 558 11 2572 128 12 325 81 TSPAN9,PRMT8
SE_02_074600388 chr12:3200341-3264373 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 388 19 2238 103 9 276 81 TSPAN9,PRMT8
SE_02_090000054 chr12:3200382-3277509 Sample_02_0900 Heart left ventricle_LV1452 54 29 2701 140 14 330 81 TSPAN9,PRMT8
SE_02_091500196 chr12:3200416-3274631 Sample_02_0915 Heart left ventricle_DCM_LV1371 196 31 2588 132 12 319 81 TSPAN9,PRMT8
SE_02_069100050 chr12:3200422-3274507 Sample_02_0691 Lung NCI-H524_no infection 50 41 2582 130 12 319 81 TSPAN9,PRMT8
SE_02_091600099 chr12:3200426-3274795 Sample_02_0916 Heart left ventricle_DCM_LV1392 99 34 2593 132 12 319 81 TSPAN9,PRMT8
SE_02_091800075 chr12:3201105-3274548 Sample_02_0918 Heart left ventricle_DCM_LV1437 75 29 2567 131 12 297 48 TSPAN9,PRMT8
SE_02_128500060 chr12:3203705-3264622 Sample_02_1285 Lung NCI-H2171_p8-15 60 23 2144 103 9 247 0 TSPAN9,PRMT8
SE_02_093700665 chr12:3204477-3280645 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 665 17 2712 157 15 306 327 TSPAN9,PRMT8
SE_02_128600035 chr12:3205189-3254116 Sample_02_1286 Lung NCI-H378_p8-15 35 22 1754 69 8 150 0 TSPAN9,PRMT8
SE_02_147500756 chr12:3213864-3264963 Sample_02_1475 Bone CHLA-25 756 11 1809 84 9 220 0 TSPAN9,PRMT8
SE_02_128000609 chr12:3214599-3252329 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 609 12 1362 45 8 118 0 TSPAN9,PRMT8
SE_02_053400380 chr12:3214932-3263906 Sample_02_0534 Blood vessel Circle of Willis_60y 380 18 1734 73 9 189 0 TSPAN9,PRMT8
SE_02_105900825 chr12:3214946-3253058 Sample_02_1059 Bone A673_WT 825 10 1372 45 8 123 0 TSPAN9,PRMT8
SE_02_147300826 chr12:3214946-3253058 Sample_02_1473 Bone A-673 826 10 1372 45 8 123 0 TSPAN9,PRMT8
SE_02_132200930 chr12:3216118-3249332 Sample_02_1322 Connective Tissue HT1080_WT 930 5 1222 38 7 103 0 TSPAN9,PRMT8
SE_02_091400202 chr12:3216395-3267394 Sample_02_0914 Heart left ventricle_DCM_LV1342 202 22 1823 87 11 218 0 TSPAN9,PRMT8
SE_02_138800889 chr12:3216860-3263802 Sample_02_1388 Peripheral blood JB6_ALK+ 889 12 1668 68 8 187 0 TSPAN9,PRMT8
SE_02_107800441 chr12:3218188-3255668 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 441 11 1349 45 6 140 0 TSPAN9,PRMT8
SE_02_107900133 chr12:3219002-3255658 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 133 12 1308 43 6 129 0 TSPAN9,PRMT8
SE_02_138600160 chr12:3223296-3275433 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 160 15 1828 99 10 218 0 TSPAN9,PRMT8
SE_02_155300760 chr12:3242686-3275433 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 760 18 1189 84 7 166 0 TSPAN9,PRMT8
SE_02_104600311 chr12:3270458-3438542 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 311 53 4986 269 10 289 2796 PRMT8,TSPAN9
SE_02_039600969 chr12:3272840-3344106 Sample_02_0396 Skin NHEK-D 969 16 2521 198 7 188 2752 TSPAN9,PRMT8
SE_02_021600288 chr12:3287071-3322009 Sample_02_0216 Skin NHEK_scramble 288 10 1235 101 0 86 808 PRMT8
SE_02_068700119 chr12:3288374-3337771 Sample_02_0687 Lung NCI-H146_no infection 119 13 1713 141 2 107 1389 PRMT8
SE_02_155300983 chr12:3292460-3323528 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 983 16 1090 90 0 79 895 PRMT8
SE_02_044400075 chr12:3294102-3382570 Sample_02_0444 Bone osteosarcoma tumor P10 75 27 2750 166 5 152 1433 PRMT8
SE_02_120501129 chr12:3294213-3349853 Sample_02_1205 Brain NB3 1129 25 1889 127 3 104 1389 PRMT8
SE_02_148200017 chr12:3296220-3390821 Sample_02_1482 Bone POE 17 25 2866 163 5 170 1406 PRMT8
SE_02_102500359 chr12:3298749-3317354 Sample_02_1025 Esophagus KYSE150 359 6 640 45 0 41 109 PRMT8
SE_02_154000467 chr12:3299299-3317533 Sample_02_1540 Nasopharyngeal HK1 467 8 624 43 0 44 109 PRMT8
SE_02_126800662 chr12:3299312-3315383 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 662 5 558 36 0 31 109 PRMT8
SE_02_126200458 chr12:3299379-3314233 Sample_02_1262 Bone Im-GCT-3504_G34W 458 4 529 34 0 31 109 PRMT8
SE_02_105400833 chr12:3299506-3316530 Sample_02_1054 Esophagus SKGT4 833 10 593 40 0 40 109 PRMT8,TSPAN9
SE_02_074100744 chr12:3299579-3316891 Sample_02_0741 Muscle RH30 744 5 604 42 0 40 109 PRMT8
SE_02_035600293 chr12:3299795-3317285 Sample_02_0356 Colon Sw480 293 3 603 39 0 40 106 PRMT8,TSPAN9
SE_02_019600362 chr12:3300166-3316746 Sample_02_0196 Stomach NCC59 362 4 574 36 0 40 35 PRMT8,TEAD4
SE_02_128300170 chr12:3300236-3343547 Sample_02_1283 Lung NCI-H2107_p8-15 170 12 1479 103 3 91 801 PRMT8
SE_02_105100290 chr12:3300284-3317314 Sample_02_1051 Esophagus Eso26 290 6 584 36 0 40 20 PRMT8
SE_02_137000582 chr12:3300325-3315967 Sample_02_1370 Pancreas Patu8902-untreated 582 6 544 31 0 39 12 PRMT8
SE_02_105200426 chr12:3300347-3315863 Sample_02_1052 Esophagus JH-EsoAd1 426 10 542 31 0 39 10 PRMT8
SE_02_129400134 chr12:3303077-3342667 Sample_02_1294 Lung JHU-LX44-SCLC PDX 134 13 1349 94 3 88 776 PRMT8
SE_02_021900243 chr12:3303994-3313780 Sample_02_0219 Mammary gland MDA-MB-231 243 4 356 18 0 19 0 PRMT8,TSPAN9
SE_02_030700386 chr12:3333084-3346415 Sample_02_0307 Neuroblastoma SJNB12 386 2 438 14 1 2 152 PRMT8,TSPAN9
SE_02_148300104 chr12:3333560-3365955 Sample_02_1483 Bone RD-ES 104 8 947 35 2 35 152 PRMT8
SE_02_128000377 chr12:3340496-3389985 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 377 10 1338 44 3 63 44 PRMT8
SE_02_148000211 chr12:3341222-3388652 Sample_02_1480 Bone MHH-ES-1 211 9 1270 43 3 61 44 PRMT8
SE_02_106000699 chr12:3341449-3365781 Sample_02_1060 Bone TC71_SA2 KO 699 12 691 25 2 33 0 PRMT8
SE_02_148600802 chr12:3341746-3356224 Sample_02_1486 Bone SK-N-MC 802 7 429 16 2 18 0 PRMT8
SE_02_148100840 chr12:3379125-3398114 Sample_02_1481 Bone MIC 840 5 452 9 0 26 44 PRMT8
SE_01_006400493 chr12:3379353-3389448 Sample_01_0064 Brain: derived from metastatic site: supra-orbital area SK-N-MC 493 2 250 6 0 14 44 PRMT8,EFCAB4B
SE_02_148600647 chr12:3379409-3389881 Sample_02_1486 Bone SK-N-MC 647 6 256 6 0 14 44 PRMT8
SE_02_019600078 chr12:3444244-3465103 Sample_02_0196 Stomach NCC59 78 5 610 4 2 35 532 PRMT8,EFCAB4B
SE_02_032400162 chr12:3445841-3469793 Sample_02_0324 Colon SW48 162 2 714 4 2 37 541 PRMT8,EFCAB4B
SE_02_102500470 chr12:3451908-3461743 Sample_02_1025 Esophagus KYSE150 470 4 296 3 0 21 485 PRMT8,THCAT155
SE_02_154000489 chr12:3451976-3464992 Sample_02_1540 Nasopharyngeal HK1 489 6 380 3 0 32 485 PRMT8,THCAT155
SE_02_035600311 chr12:3452457-3465166 Sample_02_0356 Colon Sw480 311 3 377 3 0 32 485 PRMT8,EFCAB4B
SE_02_153901025 chr12:3452624-3465066 Sample_02_1539 Nasopharyngeal C666-1 1025 6 375 3 0 32 485 PRMT8,THCAT155,TSPAN9
SE_02_019900155 chr12:3453324-3464933 Sample_02_0199 Stomach KATO3 155 3 344 2 0 32 485 PRMT8,EFCAB4B
SE_02_052100460 chr12:3453406-3465077 Sample_02_0521 Colon SW480 460 2 350 2 0 32 485 PRMT8,THCAT155
SE_02_018500935 chr12:3596588-3605617 Sample_02_0185 Skin UACC257 935 3 294 27 0 38 0 PRMT8,EFCAB4B
SE_00_002900814 chr12:3597013-3608643 Sample_00_0029 Ovary ovary 814 10 365 33 0 52 124 PRMT8,EFCAB4B
Genomic distribution of SEs associated with PRMT8
Genome Browser

The strength of the tissue affected by the gene

Expression of PRMT8

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)