SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000100151
Gene: PICK1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr22:38056311-38075701 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_035000003 chr22:37966262-38084185 Sample_02_0350 Dorsolateral prefrontal cortex dorsolateral-prefrontal-cortex 3 38 3133 182 8 543 4851 POLR2F,PICK1,SOX10,SLC16A8,C22ORF23,BAIAP2L2
SE_02_101400002 chr22:37996506-38062640 Sample_02_1014 Brain Lateral temporal lobe_7T_AD 2 29 1744 107 5 206 293 POLR2F,PICK1,MIR5096,SOX10,C22ORF23,MIR4534,MIR6820,SLC16A8,BAIAP2L2
SE_02_100300002 chr22:37997614-38051176 Sample_02_1003 Brain Lateral temporal lobe_19T_Young 2 14 1368 57 2 165 0 POLR2F,MIR5096,SOX10,C22ORF23,PICK1,MIR4534,MIR6820,SLC16A8
SE_02_100000008 chr22:38014551-38081699 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 8 44 1934 129 5 313 1994 POLR2F,PICK1,SLC16A8,MIR5096,SOX10,MIR4534,MIR6820,BAIAP2L2
SE_01_007200573 chr22:38014882-38043618 Sample_01_0072 Breast epithelium breast-epithelium 573 7 781 28 0 148 0 PICK1,SLC16A8,SOX10
SE_02_085600084 chr22:38014956-38050919 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 84 8 959 36 0 157 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_009500087 chr22:38014988-38043595 Sample_02_0095 Mammary gland MDA-MB-468 87 4 777 28 0 148 0 PICK1,SLC16A8,SOX10
SE_02_006800003 chr22:38014991-38053287 Sample_02_0068 Skin A375_DMSO 3 8 1043 44 0 161 0 PICK1,SLC16A8,SOX10
SE_02_079400248 chr22:38014996-38034806 Sample_02_0794 Brain 1552 248 4 557 18 0 123 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_018400009 chr22:38015011-38052984 Sample_02_0184 Skin SKMEL30 9 8 1034 44 0 161 0 PICK1,SLC16A8,SOX10
SE_02_018500015 chr22:38015011-38053416 Sample_02_0185 Skin UACC257 15 8 1050 46 0 161 0 PICK1,SLC16A8,SOX10
SE_02_018100011 chr22:38015014-38053413 Sample_02_0181 melanoma COLO679 11 8 1049 46 0 161 0 PICK1,SLC16A8,SOX10
SE_02_057000025 chr22:38015061-38051359 Sample_02_0570 Brain LN229_10_mM_glucose 25 13 963 38 0 157 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_094400043 chr22:38015073-38052392 Sample_02_0944 Brain TS576 43 9 1005 42 0 157 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_155100175 chr22:38015073-38052907 Sample_02_1551 Gastrointestinal Stromal MaMel 175 12 1027 44 0 161 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_149300054 chr22:38015092-38053288 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 54 12 1037 44 0 161 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_080000332 chr22:38015104-38039317 Sample_02_0800 Brain 3679 332 5 667 23 0 148 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_152100080 chr22:38015111-38040566 Sample_02_1521 Skin A375 DMSO 80 6 689 24 0 148 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_118300497 chr22:38015126-38070899 Sample_02_1183 Brain GBM12 497 25 1560 108 4 228 665 POLR2F,PICK1,MIR5096,SOX10,MIR4534,MIR6820,SLC16A8,BAIAP2L2
SE_02_096300583 chr22:38015136-38053115 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 583 5 1034 44 0 161 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_130700038 chr22:38015148-38052421 Sample_02_1307 Brain Glioblastoma patient derived cancer stem cell 38 13 1006 42 0 160 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_119700272 chr22:38015150-38081292 Sample_02_1197 Brain GBM33 272 24 1903 129 5 293 1894 POLR2F,PICK1,SLC16A8,MIR5096,SOX10,MIR4534,MIR6820,BAIAP2L2
SE_02_097300129 chr22:38015172-38040261 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 129 6 682 24 0 148 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_057200069 chr22:38015224-38042610 Sample_02_0572 Brain LN229_1_mM_glucose 69 14 744 26 0 148 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_100700009 chr22:38015238-38052984 Sample_02_1007 Brain Lateral temporal lobe_14T_Old 9 25 1028 44 0 161 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_035900021 chr22:38015260-38051396 Sample_02_0359 Colon Colo741 21 4 963 38 0 157 0 PICK1,SLC16A8,SOX10
SE_02_040500009 chr22:38015281-38040302 Sample_02_0405 Mammary gland ZR-75-30_KO 9 8 680 24 0 148 0 PICK1,SLC16A8,SOX10
SE_02_094200006 chr22:38015317-38039984 Sample_02_0942 Brain LN229 6 9 672 24 0 148 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_101100002 chr22:38015424-38081024 Sample_02_1011 Brain Lateral temporal lobe_5T_AD 2 32 1880 127 5 285 1838 POLR2F,PICK1,SLC16A8,MIR5096,SOX10,MIR4534,MIR6820,BAIAP2L2
SE_02_040600009 chr22:38015491-38040044 Sample_02_0406 Mammary gland ZR-75-30_parental 9 10 670 24 0 148 0 PICK1,SLC16A8,SOX10
SE_02_098100138 chr22:38015549-38051026 Sample_02_0981 Brain H3.3K27M-KO_BT245-C4P6 138 8 944 36 0 157 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_100400019 chr22:38015560-38039850 Sample_02_1004 Brain Lateral temporal lobe_10T_Old 19 6 666 24 0 148 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_097400010 chr22:38015605-38039233 Sample_02_0974 Brain H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells 10 13 656 23 0 148 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_117500352 chr22:38015605-38062697 Sample_02_1175 Brain GBM03 352 16 1292 86 3 197 293 POLR2F,PICK1,MIR5096,SOX10,MIR4534,MIR6820,SLC16A8,BAIAP2L2
SE_02_120000535 chr22:38015703-38070146 Sample_02_1200 Brain GBM36 535 13 1531 108 4 228 604 POLR2F,PICK1,MIR5096,SOX10,MIR4534,MIR6820,SLC16A8,BAIAP2L2
SE_02_103000534 chr22:38015795-38052115 Sample_02_1030 Colon DKO 534 16 978 41 0 157 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_098000051 chr22:38015812-38039778 Sample_02_0980 Brain BT245 51 7 661 23 0 148 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_098300050 chr22:38015812-38046483 Sample_02_0983 Brain H3.3K27M_BT245-C1P5 50 7 826 30 0 150 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_095900117 chr22:38015871-38039587 Sample_02_0959 Brain H3.3K27M_BT245p6_cells 117 6 659 23 0 148 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_119100911 chr22:38015886-38063508 Sample_02_1191 Brain GBM25 911 13 1327 90 3 197 293 POLR2F,PICK1,MIR5096,SOX10,MIR4534,MIR6820,SLC16A8,BAIAP2L2
SE_02_114500594 chr22:38015913-38053249 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 594 14 1023 44 0 161 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_100900008 chr22:38015944-38089055 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 8 41 2160 136 6 370 3035 POLR2F,PICK1,SLC16A8,BAIAP2L2,MIR5096,SOX10,MIR4534,MIR6820
SE_02_138400487 chr22:38016030-38053224 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 487 13 1016 44 0 160 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_100100006 chr22:38016044-38039934 Sample_02_1001 Brain Lateral temporal lobe_17T_Young 6 9 655 24 0 147 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_106200019 chr22:38016932-38039830 Sample_02_1062 Glioma TS543 glioma cells 19 13 634 24 0 117 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_101200005 chr22:38017013-38050071 Sample_02_1012 Brain Lateral temporal lobe_8T_AD 5 9 883 36 0 124 0 POLR2F,MIR5096,SOX10,MIR6820,MIR4534,PICK1,SLC16A8
SE_02_095800077 chr22:38021985-38041939 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 77 1 540 20 0 101 0 POLR2F,MIR5096,SOX10,MIR4534,PICK1,SLC16A8
SE_02_121300145 chr22:38023492-38044226 Sample_02_1213 Brain GBM31 145 1 572 23 0 101 0 POLR2F,MIR5096,SOX10,MIR4534,PICK1,SLC16A8
SE_02_097000194 chr22:38023599-38043102 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 194 1 541 22 0 101 0 POLR2F,MIR5096,SOX10,MIR4534,PICK1,SLC16A8
SE_02_120300181 chr22:38023627-38043852 Sample_02_1203 Brain NB1 181 1 558 23 0 101 0 POLR2F,MIR5096,SOX10,MIR4534,PICK1,SLC16A8
SE_02_118500475 chr22:38024003-38043403 Sample_02_1185 Brain GBM14 475 1 531 21 0 101 0 POLR2F,MIR5096,SOX10,MIR4534,PICK1,SLC16A8
SE_02_152200116 chr22:38024088-38041051 Sample_02_1522 Skin A375 RTKi 116 1 470 19 0 101 0 POLR2F,MIR5096,SOX10,MIR4534,PICK1,SLC16A8
SE_02_098500031 chr22:38024122-38035955 Sample_02_0985 Brain H3.3K27M-DIPGXIII-C14 31 1 356 13 0 76 0 POLR2F,SOX10,MIR4534,PICK1,SLC16A8
SE_02_120500334 chr22:38024218-38044023 Sample_02_1205 Brain NB3 334 1 543 22 0 101 0 POLR2F,SOX10,MIR4534,PICK1,SLC16A8
SE_02_121200215 chr22:38024285-38040857 Sample_02_1212 Brain GBM30 215 1 460 18 0 101 0 POLR2F,SOX10,MIR4534,PICK1,SLC16A8
SE_02_117300084 chr22:38024307-38043838 Sample_02_1173 Brain GBM01 84 1 538 22 0 101 0 POLR2F,SOX10,MIR4534,PICK1,SLC16A8
SE_02_117600105 chr22:38024316-38041391 Sample_02_1176 Brain GBM04 105 1 477 19 0 101 0 POLR2F,SOX10,MIR4534,PICK1,SLC16A8
SE_02_096900789 chr22:38024347-38031820 Sample_02_0969 Brain H3.3K27M_PL637 789 1 224 10 0 52 0 POLR2F,SOX10,MIR4534,PICK1
SE_02_096200115 chr22:38024370-38037432 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 115 1 385 16 0 76 0 POLR2F,SOX10,MIR4534,PICK1,SLC16A8
SE_02_120200488 chr22:38024371-38035961 Sample_02_1202 Brain GBM38 488 1 349 13 0 76 0 POLR2F,SOX10,MIR4534,PICK1,SLC16A8
SE_02_085800141 chr22:38024386-38040789 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 141 1 455 18 0 101 0 POLR2F,SOX10,MIR4534,PICK1,SLC16A8
SE_02_119600221 chr22:38024395-38041634 Sample_02_1196 Brain GBM32 221 1 480 19 0 101 0 POLR2F,SOX10,MIR4534,PICK1,SLC16A8
SE_02_121100131 chr22:38024400-38041590 Sample_02_1211 Brain GBM21 131 1 479 19 0 101 0 POLR2F,SOX10,MIR4534,PICK1,SLC16A8
SE_02_087200374 chr22:38026458-38050145 Sample_02_0872 Colon HCT116_siCtrl-5FU 374 8 637 30 0 108 0 POLR2F,SOX10,MIR4534,PICK1,SLC16A8
SE_02_120400348 chr22:38029388-38043709 Sample_02_1204 Brain NB2 348 1 391 19 0 56 0 POLR2F,SOX10,MIR4534,PICK1,SLC16A8
SE_02_117900576 chr22:38032147-38040125 Sample_02_1179 Brain GBM08 576 1 205 6 0 47 0 POLR2F,SOX10,MIR4534,PICK1,SLC16A8
SE_02_084100593 chr22:38032388-38076503 Sample_02_0841 Blood THP-1_untr 593 10 1230 96 4 174 1535 POLR2F,PICK1,SOX10,MIR4534,BAIAP2L2,SLC16A8
SE_02_101000020 chr22:38033386-38052734 Sample_02_1010 Brain Lateral temporal lobe_3T_AD 20 4 504 24 0 57 0 POLR2F,SOX10,MIR4534,PICK1,SLC16A8
SE_02_066900640 chr22:38033821-38070528 Sample_02_0669 Prostate prostate cancer_DSG 640 8 1030 90 4 111 604 POLR2F,PICK1,SOX10,MIR4534,BAIAP2L2,SLC16A8
SE_02_068100517 chr22:38033893-38053070 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 517 4 506 26 0 39 0 POLR2F,SOX10,MIR4534,PICK1,SLC16A8,BAIAP2L2,C22ORF23
SE_02_096201009 chr22:38037708-38041021 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 1009 1 74 2 0 25 0 POLR2F,MIR4534,PICK1,SLC16A8
SE_02_117301016 chr22:38048594-38053484 Sample_02_1173 Brain GBM01 1016 1 157 13 0 5 0 PICK1,SLC16A8
SE_02_036300064 chr22:38051828-38078913 Sample_02_0363 Haematopoietic and lymphoid tissue 697 64 3 826 81 4 123 1745 PICK1,SLC16A8,BAIAP2L2
SE_00_000400514 chr22:38057453-38071708 Sample_00_0004 Aorta aorta 514 6 410 39 2 47 660 PICK1,BAIAP2L2,SLC16A8
Genomic distribution of SEs associated with PICK1
Genome Browser

The strength of the tissue affected by the gene

Expression of PICK1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)