Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000189184
Gene: PCDH18 Gene type: protein_coding
Strand: - External links:
Genomic region: chr4:137518918-137532494 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_020901234 chr4:136713074-136764298 Sample_02_0209 Lung MRC-5_MRC5_1DPT 1234 8 1499 2 7 31 0 PCDH18
SE_02_027000330 chr4:136922257-136939557 Sample_02_0270 Kidney PCS-400 330 8 517 0 3 18 0 PCDH18
SE_02_128100008 chr4:137121326-137165708 Sample_02_1281 Lung NCI-H1048_p8-15 8 20 1233 6 2 47 0 PCDH18
SE_02_069700653 chr4:137123445-137136688 Sample_02_0697 Lung NCI-H1048-cas9_sgHROSA 653 10 349 0 0 27 0 PCDH18
SE_02_128100010 chr4:137196242-137228019 Sample_02_1281 Lung NCI-H1048_p8-15 10 9 941 33 11 56 104 PCDH18
SE_02_155200206 chr4:137246937-137314035 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 206 21 1916 14 10 92 0 PCDH18
SE_02_128100005 chr4:137248897-137313217 Sample_02_1281 Lung NCI-H1048_p8-15 5 36 1848 12 9 89 0 PCDH18
SE_02_086701253 chr4:137254515-137311774 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 1253 19 1639 9 8 79 0 PCDH18
SE_02_157300906 chr4:137265040-137313522 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 906 13 1376 9 6 45 0 PCDH18
SE_02_150300783 chr4:137273132-137314094 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 783 12 1129 8 6 45 0 PCDH18
SE_02_150200701 chr4:137273478-137313983 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 701 14 1114 8 5 45 0 PCDH18
SE_02_149800495 chr4:137273851-137313621 Sample_02_1498 Brain SHEP-21N_DOX_2h 495 13 1091 8 5 45 0 PCDH18
SE_02_030100531 chr4:137282443-137314127 Sample_02_0301 Neuroblastoma GIMEN 531 3 877 7 5 45 0 PCDH18
SE_02_131000608 chr4:137282622-137323026 Sample_02_1310 Bone marrow ASMSCs 608 5 1139 27 5 43 0 PCDH18
SE_02_044100329 chr4:137282745-137322685 Sample_02_0441 Bone M112 329 31 1121 27 5 43 0 PCDH18
SE_02_131100574 chr4:137282797-137313217 Sample_02_1311 Bone marrow HDMSCs 574 5 845 7 4 43 0 PCDH18
SE_02_043900249 chr4:137282898-137319973 Sample_02_0439 Bone Hu09 249 33 1044 19 5 43 0 PCDH18
SE_02_138900421 chr4:137350846-137377372 Sample_02_1389 Peripheral blood SUP-M2_ALK+ 421 3 725 42 6 47 0 PCDH18
SE_02_014000102 chr4:137356794-137401628 Sample_02_0140 Kidney RT242 102 6 1211 69 8 85 0 PCDH18
SE_02_021001025 chr4:137357025-137374656 Sample_02_0210 Lung MRC-5_N_1DPT 1025 5 476 28 5 41 0 PCDH18
SE_02_074900621 chr4:137357639-137394602 Sample_02_0749 Mammary gland HCC1599_GSI 621 14 981 55 8 79 0 PCDH18
SE_02_074800614 chr4:137357712-137377085 Sample_02_0748 Mammary gland HCC1599_WO 614 4 527 32 6 47 0 PCDH18
SE_01_011100503 chr4:137357849-137394974 Sample_01_0111 Brain SK-N-SH 503 11 978 55 8 80 0 PCDH18
SE_02_024300534 chr4:137358236-137392341 Sample_02_0243 Foreskin foreskin_HFFs 534 5 897 53 8 57 0 PCDH18
SE_02_155200292 chr4:137358307-137394660 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 292 9 952 54 8 73 0 PCDH18
SE_02_030101266 chr4:137358315-137395252 Sample_02_0301 Neuroblastoma GIMEN 1266 6 966 55 8 74 0 PCDH18
SE_02_060600550 chr4:137358377-137391393 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 550 10 871 50 7 51 0 PCDH18
SE_02_060500921 chr4:137358434-137391382 Sample_02_0605 Skin Skin Fibroblast_DMSO 921 10 871 50 7 51 0 PCDH18
SE_02_150300705 chr4:137358468-137400957 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 705 12 1135 64 8 79 0 PCDH18
SE_02_131100815 chr4:137358571-137394442 Sample_02_1311 Bone marrow HDMSCs 815 9 947 54 8 71 0 PCDH18
SE_02_131000795 chr4:137358784-137394579 Sample_02_1310 Bone marrow ASMSCs 795 8 943 54 7 69 0 PCDH18
SE_02_151700205 chr4:137358931-137395002 Sample_02_1517 Mammary gland non-transformed human mammary epithelial cell 205 6 945 54 7 67 0 PCDH18
SE_02_150100792 chr4:137359008-137400687 Sample_02_1501 Brain SHEP-21N_NOSPIKE 792 16 1120 64 7 72 0 PCDH18
SE_02_083901093 chr4:137359315-137393496 Sample_02_0839 Embryo hNPCs_K755R/+ 1093 9 896 52 7 59 0 PCDH18
SE_02_149800553 chr4:137359325-137400590 Sample_02_1498 Brain SHEP-21N_DOX_2h 553 10 1103 60 7 70 0 PCDH18
SE_02_151600527 chr4:137386686-137394192 Sample_02_1516 Non-transformed mammary epithelial IMEC MYC 527 3 184 8 2 30 0 PCDH18
SE_02_055600647 chr4:137387145-137396715 Sample_02_0556 iPSCs BOFS hiPSC cl1 647 3 251 12 2 33 0 PCDH18
SE_02_131000425 chr4:137502611-137545552 Sample_02_1310 Bone marrow ASMSCs 425 9 1203 17 1 262 626 PCDH18
SE_02_150300508 chr4:137507583-137546284 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 508 13 1066 16 1 261 626 PCDH18
SE_02_076100265 chr4:137507703-137546069 Sample_02_0761 Ovary BIN-67_SMARCA4.T910M 265 7 1062 16 1 261 626 PCDH18
SE_02_150100729 chr4:137507856-137532520 Sample_02_1501 Brain SHEP-21N_NOSPIKE 729 11 662 13 0 165 591 PCDH18
SE_02_030100328 chr4:137508332-137559903 Sample_02_0301 Neuroblastoma GIMEN 328 4 1428 39 2 320 626 PCDH18
SE_02_014000017 chr4:137508591-137544390 Sample_02_0140 Kidney RT242 17 6 994 13 1 254 626 PCDH18
SE_02_149800316 chr4:137508633-137546220 Sample_02_1498 Brain SHEP-21N_DOX_2h 316 11 1040 15 1 261 626 PCDH18
SE_02_150700475 chr4:137508651-137532470 Sample_02_1507 Brain SHEP-21N_DOX_24h 475 12 641 12 0 161 588 PCDH18
SE_02_150200533 chr4:137508668-137546229 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 533 18 1040 15 1 261 626 PCDH18
SE_02_155200435 chr4:137508857-137558921 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 435 15 1379 38 2 317 626 PCDH18
SE_02_020901160 chr4:137509139-137543084 Sample_02_0209 Lung MRC-5_MRC5_1DPT 1160 8 936 13 0 241 626 PCDH18
SE_01_009100618 chr4:137509202-137545911 Sample_01_0091 Uterus uterus 618 8 1021 15 1 258 626 PCDH18
SE_02_030500339 chr4:137509336-137543175 Sample_02_0305 Neuroblastoma SH-EP 339 5 933 13 0 240 626 PCDH18
SE_02_124200225 chr4:137509641-137561699 Sample_02_1242 Skin UISO_virus_negative 225 23 1451 40 2 322 626 PCDH18
SE_02_131100454 chr4:137509714-137545533 Sample_02_1311 Bone marrow HDMSCs 454 9 994 14 1 256 626 PCDH18
SE_02_127901702 chr4:137509731-137545549 Sample_02_1279 Bone Mesenchymal stem cells 1702 9 995 14 1 256 626 PCDH18
SE_02_017201419 chr4:137509878-137560055 Sample_02_0172 Lung IMR-90_quiescent 1419 6 1386 39 2 318 626 PCDH18
SE_02_126401238 chr4:137509888-137545724 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1238 7 999 14 1 256 626 PCDH18
SE_02_024300279 chr4:137509892-137561083 Sample_02_0243 Foreskin foreskin_HFFs 279 7 1421 39 2 322 626 PCDH18
SE_02_026200145 chr4:137509965-137546758 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 145 5 1015 15 1 270 626 PCDH18
SE_02_056900704 chr4:137509985-137545383 Sample_02_0569 Periodontal ligament mesenchymal stem cell 704 18 976 14 1 256 626 PCDH18
SE_02_026100286 chr4:137510029-137546758 Sample_02_0261 Osteoblastic hFOB_differentiated 286 5 1011 15 1 270 626 PCDH18
SE_02_156600562 chr4:137510257-137545654 Sample_02_1566 Dermal Dermal fibroblast 562 8 982 14 1 256 626 PCDH18
SE_02_060600238 chr4:137510334-137546326 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 238 13 997 15 1 259 626 PCDH18
SE_02_157100470 chr4:137510344-137560040 Sample_02_1571 Fibroblast Fibroblast cells 470 10 1372 39 2 318 626 PCDH18
SE_02_063600653 chr4:137510366-137545592 Sample_02_0636 Skin BJ5ta 653 9 978 14 1 256 626 PCDH18
SE_02_059400928 chr4:137510387-137559945 Sample_02_0594 iPSC-derived neural progenitors 928 7 1371 39 2 318 626 PCDH18
SE_02_026300244 chr4:137510392-137546350 Sample_02_0263 Osteoblastic hFOB_undifferentiated 244 7 997 15 1 259 626 PCDH18
SE_02_060500226 chr4:137510405-137546430 Sample_02_0605 Skin Skin Fibroblast_DMSO 226 9 997 15 1 259 626 PCDH18
SE_02_141000854 chr4:137510414-137545992 Sample_02_1410 Brain GSC6 854 7 988 15 1 258 626 PCDH18
SE_02_145200325 chr4:137510437-137542391 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 325 10 879 13 0 240 626 PCDH18
SE_02_145500248 chr4:137510501-137542833 Sample_02_1455 Arter pulmonary arterial smooth muscle cells_PAH2_sialdh1a3 248 11 888 13 0 239 626 PCDH18
SE_02_063700330 chr4:137510533-137546184 Sample_02_0637 Fibroblast fibroblast_WT_GM07492 330 16 987 15 1 258 626 PCDH18
SE_02_083900475 chr4:137510544-137545603 Sample_02_0839 Embryo hNPCs_K755R/+ 475 10 971 14 1 255 626 PCDH18
SE_02_154300047 chr4:137510574-137543000 Sample_02_1543 Gastrointestinal Stromal GIST-48 47 6 896 13 0 239 626 PCDH18
SE_02_145400511 chr4:137510658-137542770 Sample_02_1454 Arter pulmonary arterial smooth muscle cells_PAH1_sialdh1a3 511 6 879 13 0 236 626 PCDH18
SE_02_145100507 chr4:137510791-137542751 Sample_02_1451 Arter pulmonary arterial smooth muscle cells_PAH1_sictrl 507 7 877 13 0 235 626 PCDH18
SE_02_003601047 chr4:137511090-137544435 Sample_02_0036 Embryo H7 1047 6 918 12 1 247 626 PCDH18
SE_01_005100043 chr4:137518880-137546175 Sample_01_0051 Embryo neural-progenitor-cell 43 3 776 12 1 245 612 PCDH18
SE_02_053301366 chr4:137519104-137545695 Sample_02_0533 Blood vessel Circle of Willis_54y 1366 9 762 9 1 240 602 PCDH18
SE_02_033000691 chr4:137524358-137546165 Sample_02_0330 Endoderm MHG 691 4 644 9 1 203 376 PCDH18
SE_02_084000918 chr4:137524495-137546437 Sample_02_0840 Embryo hNPCs_R1159Q/+ 918 6 642 9 1 203 376 PCDH18
SE_02_024400461 chr4:137524720-137544488 Sample_02_0244 Foreskin foreskin_D11 461 3 582 7 1 196 376 PCDH18
SE_02_156000563 chr4:137524826-137545438 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 563 6 605 8 1 199 376 PCDH18
SE_02_043900544 chr4:137526580-137546012 Sample_02_0439 Bone Hu09 544 10 575 7 1 194 376 PCDH18
SE_02_155700184 chr4:137526586-137542845 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 184 5 478 5 0 175 376 PCDH18
SE_02_055600341 chr4:137528318-137542772 Sample_02_0556 iPSCs BOFS hiPSC cl1 341 2 417 3 0 171 376 PCDH18
SE_02_012500178 chr4:137528722-137546664 Sample_02_0125 Embryo Embryonic-stem-cells_Primed 178 2 512 4 1 197 346 PCDH18
SE_02_055700811 chr4:137528819-137535321 Sample_02_0557 iPSCs WT hiPSC#1 811 1 178 2 0 140 335 PCDH18
SE_02_086000265 chr4:137528949-137545591 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 265 8 482 3 1 177 326 PCDH18
SE_02_093100420 chr4:137529069-137544715 Sample_02_0931 Embryo H9 UTXKO 420 6 446 2 1 174 323 PCDH18
SE_02_006500169 chr4:137530792-137547615 Sample_02_0065 Embryo KO2-Late_G1 169 2 483 6 1 164 192 PCDH18
SE_02_093200270 chr4:137530938-137545668 Sample_02_0932 Embryo H9 WT_1 270 4 425 2 1 137 183 PCDH18
SE_02_001800092 chr4:137530944-137545904 Sample_02_0018 Embryo NEC 92 3 432 3 1 137 183 PCDH18
SE_02_006400171 chr4:137531162-137546404 Sample_02_0064 Embryo DN-Early_G1 171 3 434 3 1 127 159 PCDH18
SE_02_006700124 chr4:137531245-137547170 Sample_02_0067 Embryo AzH-G2/M 124 3 453 3 1 142 154 PCDH18
SE_00_001000427 chr4:137531655-137544415 Sample_00_0010 Embryo endodermal-cell 427 2 370 1 1 107 108 PCDH18
SE_02_093400283 chr4:137531697-137544609 Sample_02_0934 Embryo H7-WT 283 2 370 1 1 107 105 PCDH18
SE_02_101600930 chr4:137531874-137547066 Sample_02_1016 Embryo H9_Mesendoderm_24h 930 6 436 3 1 126 88 PCDH18
SE_02_006600111 chr4:137532315-137545915 Sample_02_0066 Embryo AzL-S_phase 111 3 398 3 1 102 55 PCDH18
SE_02_014000016 chr4:137575224-137632241 Sample_02_0140 Kidney RT242 16 5 1681 34 2 193 0 PCDH18
SE_02_055700262 chr4:137576641-137626007 Sample_02_0557 iPSCs WT hiPSC#1 262 10 1487 33 2 174 0 PCDH18
SE_02_055600130 chr4:137596782-137627054 Sample_02_0556 iPSCs BOFS hiPSC cl1 130 9 880 13 2 118 0 PCDH18
SE_02_154300054 chr4:137598339-137636907 Sample_02_1543 Gastrointestinal Stromal GIST-48 54 12 1066 13 2 143 0 PCDH18
SE_02_156000153 chr4:137602010-137724997 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 153 49 3279 18 12 361 0 PCDH18
SE_02_056900268 chr4:137602172-137686100 Sample_02_0569 Periodontal ligament mesenchymal stem cell 268 47 2229 12 11 279 0 PCDH18
SE_02_050000244 chr4:137608295-137684450 Sample_02_0500 Fetal lung IMR90_#2 244 25 2010 6 11 247 0 PCDH18
SE_02_049900311 chr4:137608538-137684038 Sample_02_0499 Fetal lung IMR90 IR Senescence 311 32 1992 5 11 244 0 PCDH18
SE_02_020900145 chr4:137609446-137708592 Sample_02_0209 Lung MRC-5_MRC5_1DPT 145 22 2586 10 11 298 0 PCDH18
SE_02_021000181 chr4:137609565-137669654 Sample_02_0210 Lung MRC-5_N_1DPT 181 10 1574 4 9 202 0 PCDH18
SE_02_083800349 chr4:137609851-137624120 Sample_02_0838 Embryo hNPCs_WT 349 4 405 1 2 60 0 PCDH18
SE_02_093200245 chr4:137618809-137648953 Sample_02_0932 Embryo H9 WT_1 245 7 801 1 1 101 0 PCDH18
SE_02_093400460 chr4:137619340-137624372 Sample_02_0934 Embryo H7-WT 460 2 157 1 0 28 0 PCDH18
SE_02_021101127 chr4:137620709-137664630 Sample_02_0211 Lung MRC-5_NFD_1DPT 1127 6 1143 2 7 145 0 PCDH18
SE_02_131000266 chr4:137625528-137679277 Sample_02_1310 Bone marrow ASMSCs 266 16 1375 3 9 160 0 PCDH18
SE_02_131100348 chr4:137627432-137679384 Sample_02_1311 Bone marrow HDMSCs 348 12 1331 3 9 151 0 PCDH18
SE_02_086800584 chr4:137631211-137677307 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 584 19 1196 3 9 129 0 PCDH18
SE_02_028200488 chr4:137643890-137677508 Sample_02_0282 Lung IMR-90 488 8 874 3 9 99 0 PCDH18
SE_02_063600704 chr4:137649354-137687268 Sample_02_0636 Skin BJ5ta 704 11 961 3 8 128 0 PCDH18
SE_02_094100653 chr4:137650502-137665900 Sample_02_0941 Brain T98G 653 7 381 2 6 46 0 PCDH18
SE_02_060500496 chr4:137650526-137685962 Sample_02_0605 Skin Skin Fibroblast_DMSO 496 12 892 3 7 127 0 PCDH18
SE_02_060600548 chr4:137650659-137685669 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 548 9 882 3 7 125 0 PCDH18
SE_02_154300158 chr4:137651690-137669868 Sample_02_1543 Gastrointestinal Stromal GIST-48 158 8 453 2 5 67 0 PCDH18
SE_02_063000153 chr4:137655306-137708087 Sample_02_0630 Gastrointestinal Stromal GIST-T1_Imatinib 153 19 1358 7 6 154 0 PCDH18
SE_02_063100495 chr4:137655401-137687112 Sample_02_0631 Gastrointestinal Stromal GIST-T1_JQ1 495 8 819 3 6 117 0 PCDH18
SE_02_154200382 chr4:137655494-137686088 Sample_02_1542 Gastrointestinal Stromal GIST-T1 382 8 788 3 6 117 0 PCDH18
SE_02_084000936 chr4:137655546-137666053 Sample_02_0840 Embryo hNPCs_R1159Q/+ 936 3 271 2 4 32 0 PCDH18
SE_02_026300391 chr4:137656204-137706807 Sample_02_0263 Osteoblastic hFOB_undifferentiated 391 8 1295 6 5 145 0 PCDH18
SE_02_157100203 chr4:137656799-137679255 Sample_02_1571 Fibroblast Fibroblast cells 203 7 568 2 5 73 0 PCDH18
SE_02_083900528 chr4:137657979-137678481 Sample_02_0839 Embryo hNPCs_K755R/+ 528 4 521 2 4 72 0 PCDH18
SE_02_055600077 chr4:137658003-137687351 Sample_02_0556 iPSCs BOFS hiPSC cl1 77 9 744 2 4 110 0 PCDH18
SE_02_026200984 chr4:137658282-137678079 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 984 3 505 2 4 66 0 PCDH18
SE_02_055700219 chr4:137658693-137687257 Sample_02_0557 iPSCs WT hiPSC#1 219 8 724 2 4 110 0 PCDH18
SE_02_062900529 chr4:137661430-137706539 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 529 11 1154 6 3 140 0 PCDH18
SE_02_021000898 chr4:137684179-137705827 Sample_02_0210 Lung MRC-5_N_1DPT 898 6 559 4 0 49 0 PCDH18
SE_02_155700439 chr4:137685536-137707758 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 439 9 565 4 0 43 0 PCDH18
SE_02_154300316 chr4:137691735-137707797 Sample_02_1543 Gastrointestinal Stromal GIST-48 316 6 384 2 0 35 0 PCDH18

Genomic distribution of SEs associated with PCDH18

The strength of the tissue affected by the gene


Expression of PCDH18