Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000225937 |
| Gene: | PCA3 | Gene type: | lncRNA |
| Strand: | + | External links: |
|
| Genomic region: | chr9:76691980-76863307 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_010400441 | chr9:76607320-76664257 |
Sample_02_0104 | Blood | neutrophils | 441 | 11 | 1503 | 84 | 21 | 152 | 741 | PRUNE2,PCA3 |
| SE_01_005300572 | chr9:76618987-76658775 |
Sample_01_0053 | Haematopoietic and lymphoid tissue | OCI-LY1 | 572 | 7 | 1047 | 57 | 13 | 119 | 436 | PRUNE2,PCA3 |
| SE_02_036300460 | chr9:76623978-76659573 |
Sample_02_0363 | Haematopoietic and lymphoid tissue | 697 | 460 | 6 | 943 | 46 | 12 | 102 | 400 | PRUNE2,PCA3,GCNT1 |
| SE_02_040100204 | chr9:76631502-76698931 |
Sample_02_0401 | Mammary gland | SUM159PT-T47D | 204 | 12 | 1726 | 123 | 18 | 131 | 455 | PRUNE2,PCA3,GCNT1 |
| SE_02_042000080 | chr9:76633319-76690519 |
Sample_02_0420 | Pectoralis major muscle | LHCN-M2_dox_6h | 80 | 14 | 1429 | 82 | 15 | 106 | 385 | PRUNE2,PCA3 |
| SE_02_011100157 | chr9:76633649-76690696 |
Sample_02_0111 | Ovaries | IOE4 | 157 | 6 | 1427 | 83 | 15 | 106 | 385 | PRUNE2,PCA3,GCNT1 |
| SE_02_010700566 | chr9:76633934-76701996 |
Sample_02_0107 | Endometrium | EEC16 | 566 | 7 | 1746 | 127 | 18 | 131 | 455 | PRUNE2,PCA3,GCNT1 |
| SE_02_041900196 | chr9:76646071-76700625 |
Sample_02_0419 | Pectoralis major muscle | LHCN-M2_nodox | 196 | 17 | 1387 | 111 | 13 | 72 | 214 | PRUNE2,PCA3,GCNT1 |
| SE_01_004400264 | chr9:76648062-76659837 |
Sample_01_0044 | Haematopoietic and lymphoid tissue | Loucy | 264 | 1 | 319 | 16 | 5 | 24 | 87 | PRUNE2,PCA3,GCNT1 |
| SE_02_003300798 | chr9:76649383-76719386 |
Sample_02_0033 | Pancreas | pancreatic-islets-F | 798 | 9 | 1942 | 179 | 15 | 213 | 1223 | PRUNE2,PCA3,GCNT1 |
| SE_02_010800488 | chr9:76650295-76688986 |
Sample_02_0108 | Fallopian tube | FT246 | 488 | 5 | 968 | 58 | 8 | 45 | 144 | PRUNE2,PCA3 |
| SE_01_001800268 | chr9:76650363-76700999 |
Sample_01_0018 | Submandibular Salivary Gland | ACC112 | 268 | 5 | 1297 | 106 | 11 | 71 | 214 | PRUNE2,PCA3 |
| SE_01_002600816 | chr9:76651081-76692398 |
Sample_01_0026 | Umbilical vein | endothelial-cell-of-umbilical-vein | 816 | 7 | 1024 | 74 | 8 | 51 | 214 | PRUNE2,PCA3,GCNT1 |
| SE_01_006300404 | chr9:76652796-76702231 |
Sample_01_0063 | Skeletal muscle | skeletal-muscle-myoblast | 404 | 5 | 1270 | 107 | 11 | 55 | 170 | PRUNE2,PCA3,GCNT1 |
| SE_02_026500484 | chr9:76653213-76705076 |
Sample_02_0265 | Skeletal muscle | 7250-PAX3-FOXO1 | 484 | 11 | 1361 | 124 | 13 | 74 | 330 | PRUNE2,PCA3,GCNT1 |
| SE_02_026700402 | chr9:76653238-76689919 |
Sample_02_0267 | Kidney | 786-O | 402 | 6 | 910 | 57 | 7 | 30 | 95 | PRUNE2,PCA3,GCNT1 |
| SE_02_037000219 | chr9:76662513-76704688 |
Sample_02_0370 | Skeletal muscle | RH4 | 219 | 8 | 1084 | 112 | 9 | 61 | 248 | PRUNE2,PCA3 |
| SE_02_013800278 | chr9:76691406-76716683 |
Sample_02_0138 | Brain | RT172 | 278 | 3 | 820 | 102 | 7 | 150 | 1079 | PRUNE2,PCA3 |
| SE_01_002100628 | chr9:76748845-76757900 |
Sample_01_0021 | Skin | bipolar-neuron | 628 | 2 | 273 | 27 | 3 | 39 | 0 | PRUNE2,PCA3 |
| SE_02_076500191 | chr9:76756269-76839899 |
Sample_02_0765 | Prostate | 22RV1-DHT-DMSO_6h | 191 | 30 | 2405 | 129 | 11 | 282 | 655 | PCA3,PRUNE2 |
| SE_02_066900256 | chr9:76761693-76800890 |
Sample_02_0669 | Prostate | prostate cancer_DSG | 256 | 14 | 1083 | 51 | 3 | 98 | 537 | PCA3,PRUNE2 |
| SE_02_140700060 | chr9:76784204-76843236 |
Sample_02_1407 | Prostate | LNCaP_R1881 4h | 60 | 20 | 1695 | 84 | 10 | 197 | 430 | PCA3,PRUNE2 |
| SE_02_016900054 | chr9:76784263-76837794 |
Sample_02_0169 | Prostate | LNCaP_R1881 | 54 | 7 | 1500 | 84 | 10 | 197 | 421 | PCA3,PRUNE2 |
| SE_02_076400062 | chr9:76784417-76843445 |
Sample_02_0764 | Prostate | LNCaP_DHT_DMSO_6h | 62 | 19 | 1697 | 84 | 10 | 197 | 406 | PCA3,PRUNE2 |
| SE_02_017000052 | chr9:76784528-76837772 |
Sample_02_0170 | Prostate | LNCaP_R1881_DOX | 52 | 8 | 1491 | 84 | 10 | 197 | 394 | PCA3,PRUNE2 |
| SE_02_140900038 | chr9:76784556-76842977 |
Sample_02_1409 | Prostate | LNCaP_R1881 4h_MED19_OE | 38 | 19 | 1670 | 84 | 10 | 197 | 391 | PCA3,PRUNE2 |
| SE_02_140800048 | chr9:76784562-76843569 |
Sample_02_1408 | Prostate | LNCaP_EtOH_vehicle_4h_MED19_OE | 48 | 18 | 1699 | 84 | 10 | 197 | 390 | PCA3,PRUNE2 |
| SE_02_016800034 | chr9:76784799-76845056 |
Sample_02_0168 | Prostate | LNCaP | 34 | 5 | 1739 | 84 | 10 | 197 | 367 | PCA3,PRUNE2 |
| SE_02_066400051 | chr9:76785057-76843013 |
Sample_02_0664 | Prostate | LNCaP_DMSO | 51 | 15 | 1663 | 84 | 10 | 196 | 344 | PCA3,PRUNE2 |
| SE_02_140600070 | chr9:76785245-76843407 |
Sample_02_1406 | Prostate | LNCaP_EtOH_vehicle_4h | 70 | 20 | 1679 | 84 | 10 | 196 | 322 | PCA3,PRUNE2 |
| SE_02_067300014 | chr9:76785645-76844658 |
Sample_02_0673 | Prostate | LNCAP_FA | 14 | 28 | 1717 | 83 | 10 | 195 | 294 | PCA3,PRUNE2 |
| SE_02_016200077 | chr9:76791685-76802571 |
Sample_02_0162 | Prostate | C4-2B_vehicle_24h | 77 | 8 | 301 | 12 | 2 | 71 | 0 | PRUNE2,PCA3 |
| SE_02_129600505 | chr9:76791872-76819016 |
Sample_02_1296 | Perigastric lymph node | Perigastric lymph node | 505 | 10 | 755 | 37 | 4 | 107 | 0 | PRUNE2,PCA3 |
| SE_02_051000044 | chr9:76792358-76837088 |
Sample_02_0510 | Prostate | LNCaP95_shGFP_DHT | 44 | 11 | 1243 | 79 | 10 | 170 | 118 | PRUNE2,PCA3 |
| SE_02_051100067 | chr9:76792860-76843151 |
Sample_02_0511 | Prostate | LNCaP95_shARv7_ETOH | 67 | 15 | 1456 | 79 | 10 | 170 | 118 | PRUNE2,PCA3 |
| SE_02_050900175 | chr9:76792939-76801767 |
Sample_02_0509 | Prostate | LNCaP95_shGFP_ETOH | 175 | 4 | 230 | 11 | 2 | 27 | 0 | PRUNE2,PCA3 |
| SE_02_016300461 | chr9:76794114-76800859 |
Sample_02_0163 | Prostate | C4-2B_SR2211_24h | 461 | 7 | 180 | 9 | 1 | 19 | 0 | PRUNE2,PCA3 |
| SE_02_051200104 | chr9:76798154-76801773 |
Sample_02_0512 | Prostate | LNCaP95_shARv7_DHT | 104 | 4 | 86 | 4 | 1 | 27 | 0 | PRUNE2,PCA3 |
| SE_02_051400183 | chr9:76798167-76801255 |
Sample_02_0514 | Prostate | LNCaP95_shARfl_DHT | 183 | 3 | 74 | 3 | 1 | 26 | 0 | PRUNE2,PCA3 |
| SE_02_085701341 | chr9:76807906-76836951 |
Sample_02_0857 | Glioblastoma | Glioblastoma neurosphere cell_HF-3035 | 1341 | 5 | 810 | 63 | 8 | 87 | 118 | PRUNE2,PCA3 |
| SE_02_095600658 | chr9:76808274-76837058 |
Sample_02_0956 | Brain | IDH1_2658 | 658 | 11 | 802 | 63 | 8 | 87 | 118 | PRUNE2,PCA3 |
| SE_02_141000549 | chr9:76808303-76836970 |
Sample_02_1410 | Brain | GSC6 | 549 | 7 | 800 | 63 | 8 | 87 | 118 | PRUNE2,PCA3 |
| SE_01_011000856 | chr9:76813978-76845905 |
Sample_01_0110 | Aorta | thoracic aorta_37y | 856 | 17 | 962 | 56 | 7 | 66 | 118 | PRUNE2,PCA3 |
| SE_01_008900749 | chr9:76816094-76847674 |
Sample_01_0089 | Transverse colon | transverse-colon | 749 | 3 | 959 | 45 | 6 | 76 | 165 | PRUNE2,PCA3 |
| SE_02_050900382 | chr9:76818116-76843143 |
Sample_02_0509 | Prostate | LNCaP95_shGFP_ETOH | 382 | 6 | 762 | 43 | 6 | 63 | 118 | PRUNE2,PCA3 |
Genomic distribution of SEs associated with PCA3