SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000103148
Gene: NPRL3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr16:84271-138677 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_001600016 chr16:100876-127788 Sample_02_0016 Blood erythroblasts 16 1 935 90 11 54 351 NPRL3,POLR3K,SNRNP25,HBZ,HBA1,MPG,HBM,HBA2,RHBDF1
SE_04_000100011 chr16:101332-155373 Sample_04_0001 Blood heat shocked K562 11 1 1814 163 17 102 1077 NPRL3,HBZ,POLR3K,SNRNP25,HBM,RHBDF1,MPG,HBQ1,HBA2,HBA1,LUC7L,ITFG3
SE_04_000200230 chr16:102079-127107 Sample_04_0002 Blood cold shocked K562 230 1 848 84 11 53 351 NPRL3,POLR3K,SNRNP25,HBM,HBZ,RHBDF1,MPG,HBA1,HBA2,LUC7L,HBQ1
SE_02_146600146 chr16:102169-124713 Sample_02_1466 Blood HUDEP-2_BCL11AKO 146 1 762 72 10 53 285 NPRL3,POLR3K,SNRNP25,HBM,HBZ,RHBDF1,MPG,HBA2
SE_02_146800229 chr16:102435-124859 Sample_02_1468 Blood HUDEP-2_WT 229 1 757 72 9 53 299 NPRL3,POLR3K,SNRNP25,HBM,HBZ,RHBDF1,MPG,HBA2
SE_02_132900011 chr16:102550-149205 Sample_02_1329 Blood CD34+ cell_9d_differentiation 11 23 1591 145 14 85 652 NPRL3,POLR3K,SNRNP25,HBM,HBZ,RHBDF1,MPG,HBQ1,HBA2,HBA1
SE_02_084300005 chr16:102611-123755 Sample_02_0843 Umbilical cord blood HSPC-derived late erythroid precursors 5 19 710 66 9 53 285 NPRL3,POLR3K,SNRNP25,HBM,HBZ,RHBDF1,MPG,HBA2
SE_02_098800083 chr16:103540-164644 Sample_02_0988 Blood K562_EPZ 83 16 2019 184 16 111 1077 NPRL3,HBZ,POLR3K,SNRNP25,HBM,RHBDF1,MPG,HBQ1,HBA2,HBA1,LUC7L,ITFG3
SE_02_109900086 chr16:103686-164663 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 86 27 2013 183 16 111 1077 NPRL3,HBZ,SNRNP25,HBM,RHBDF1,MPG,HBQ1,HBA2,HBA1,LUC7L,POLR3K,ITFG3
SE_02_082200633 chr16:103688-122269 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 633 7 630 62 9 47 285 NPRL3,SNRNP25,HBM,HBZ,RHBDF1,MPG
SE_02_082300493 chr16:103828-124049 Sample_02_0823 Haematopoietic and lymphoid tissue SET-2_insR_GSK-LSD1 493 8 682 64 9 52 285 NPRL3,SNRNP25,HBM,HBZ,RHBDF1,MPG,HBA2
SE_02_101900051 chr16:104322-121614 Sample_02_1019 Umbilical cord HUDEP2_Day 51 8 571 57 9 47 285 NPRL3,HBM,HBZ,RHBDF1,MPG
SE_02_098700187 chr16:104322-164570 Sample_02_0987 Blood K562_Control_1 187 16 1988 182 16 111 1077 NPRL3,HBZ,HBM,RHBDF1,MPG,HBQ1,HBA2,HBA1,LUC7L,POLR3K,SNRNP25,ITFG3
SE_02_142300140 chr16:104443-126111 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 140 8 735 72 9 51 351 NPRL3,HBM,HBZ,RHBDF1,MPG,HBA2,LUC7L,HBQ1,POLR3K,SNRNP25,HBA1
SE_02_142400344 chr16:104548-124161 Sample_02_1424 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_4h 344 7 662 63 9 51 285 NPRL3,HBM,HBZ,RHBDF1,MPG,HBA2,LUC7L,HBQ1,POLR3K,SNRNP25
SE_02_043100532 chr16:111010-125084 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 532 1 485 44 6 40 263 NPRL3,HBM,HBZ,MPG,HBA2,RHBDF1
SE_02_101800096 chr16:113724-124442 Sample_02_1018 Erythroblast CD34+ Hematopoietic stem/progenitor cells_12 days 96 1 361 28 3 24 152 NPRL3,HBM,HBZ,RHBDF1,MPG,HBA2
SE_02_136300564 chr16:116361-123911 Sample_02_1363 Blood Hudep2 564 1 269 17 2 21 152 NPRL3,HBM,HBZ,RHBDF1,MPG,HBA2
SE_04_000200136 chr16:127503-155391 Sample_04_0002 Blood cold shocked K562 136 1 922 77 6 49 726 NPRL3,HBZ,HBM,MPG,HBA1,HBQ1,HBA2,RHBDF1,LUC7L,POLR3K,SNRNP25,ITFG3
SE_02_146800929 chr16:135197-147092 Sample_02_1468 Blood HUDEP-2_WT 929 1 382 30 1 25 227 NPRL3,HBM,HBZ,HBA1,HBQ1,HBA2
SE_02_001600713 chr16:141849-147415 Sample_02_0016 Blood erythroblasts 713 1 197 13 0 13 0 NPRL3,HBM,HBZ,HBA1,HBQ1,HBA2
SE_02_111200856 chr16:80008-139888 Sample_02_1112 T lymphocyte THP-6 T-ALL 856 18 2107 188 22 142 2071 MPG,NPRL3,POLR3K,SNRNP25,HBM,HBZ,RHBDF1,HBQ1,HBA2,HBA1
SE_02_104300698 chr16:80068-148393 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 698 20 2391 203 22 155 2071 MPG,NPRL3,POLR3K,SNRNP25,HBM,HBZ,RHBDF1,HBQ1,HBA2,HBA1
SE_02_057601088 chr16:83553-149602 Sample_02_0576 Blood HEL_sgLKB1e2 1088 34 2290 199 22 148 1907 MPG,NPRL3,POLR3K,SNRNP25,HBM,HBZ,RHBDF1,HBQ1,HBA2,HBA1
SE_02_109600009 chr16:83784-149595 Sample_02_1096 Blood CD34 Erythroid cells_Don003 9 16 2281 198 22 148 1869 MPG,NPRL3,POLR3K,SNRNP25,HBM,HBZ,RHBDF1,HBQ1,HBA2,HBA1
SE_02_109500029 chr16:83976-154917 Sample_02_1095 Blood CD34 Erythroid cells_Don002 29 15 2412 208 23 165 2285 MPG,NPRL3,HBZ,POLR3K,SNRNP25,HBM,RHBDF1,HBQ1,HBA2,HBA1
SE_02_058001104 chr16:84118-149703 Sample_02_0580 Blood HEL_sgSIK3e4 1104 30 2261 196 22 148 1850 MPG,NPRL3,POLR3K,SNRNP25,HBM,HBZ,RHBDF1,HBQ1,HBA2,HBA1
SE_02_057900865 chr16:84404-149331 Sample_02_0579 Blood HEL_sgNeg2 865 27 2244 195 22 148 1798 MPG,NPRL3,POLR3K,SNRNP25,HBM,HBZ,RHBDF1,HBQ1,HBA2,HBA1
SE_02_146700005 chr16:98636-155342 Sample_02_1467 Blood HUDEP-2_LRFKO 5 1 1920 176 18 110 1151 NPRL3,HBZ,POLR3K,SNRNP25,HBM,RHBDF1,MPG,HBQ1,HBA2,HBA1
Genomic distribution of SEs associated with NPRL3
Genome Browser

The strength of the tissue affected by the gene

Expression of NPRL3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)