SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000131507
Gene: NDFIP1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:142108779-142154440 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_141000703 chr5:142052700-142079824 Sample_02_1410 Brain GSC6 703 9 633 76 1 0 0 NDFIP1,GNPDA1
SE_02_057000904 chr5:142052792-142074222 Sample_02_0570 Brain LN229_10_mM_glucose 904 8 533 66 1 0 0 NDFIP1,GNPDA1
SE_02_042100633 chr5:142052939-142081210 Sample_02_0421 Brain BE2C_3 633 7 666 78 1 0 0 GNPDA1,NDFIP1
SE_02_093100200 chr5:142052957-142070486 Sample_02_0931 Embryo H9 UTXKO 200 7 430 53 1 0 0 NDFIP1,GNPDA1
SE_02_118200462 chr5:142052961-142079533 Sample_02_1182 Brain GBM11 462 6 619 74 1 0 0 NDFIP1,GNPDA1
SE_02_057201193 chr5:142052972-142074679 Sample_02_0572 Brain LN229_1_mM_glucose 1193 7 539 68 1 0 0 NDFIP1,GNPDA1
SE_02_132500449 chr5:142053005-142068875 Sample_02_1325 Hindbrain Hindbrain derived neural stem cells_NS19_H3.3K27M_WT 449 10 392 50 1 0 0 NDFIP1,GNPDA1
SE_02_057100904 chr5:142053147-142074898 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 904 7 536 70 1 0 0 NDFIP1,GNPDA1
SE_02_044500342 chr5:142053171-142145281 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 342 29 2397 312 23 120 393 NDFIP1,GNPDA1
SE_02_044400533 chr5:142053398-142130566 Sample_02_0444 Bone osteosarcoma tumor P10 533 20 2005 266 13 63 171 NDFIP1,GNPDA1
SE_02_012700251 chr5:142054173-142129486 Sample_02_0127 Blood Induced-regulatory-T-cells_CPI-703 251 13 1957 258 12 62 171 NDFIP1,GNPDA1
SE_02_013100213 chr5:142054173-142129486 Sample_02_0131 Lung 1015_PT 213 13 1957 258 12 62 171 NDFIP1,GNPDA1
SE_02_003900860 chr5:142063582-142110066 Sample_02_0039 Embryo AFG 860 9 1164 159 4 42 171 NDFIP1
SE_02_049400397 chr5:142063747-142089835 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 397 12 635 87 1 0 0 NDFIP1
SE_02_049500491 chr5:142071722-142089505 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 491 4 421 62 0 0 0 NDFIP1
SE_02_075700908 chr5:142072530-142100334 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 908 10 684 91 1 5 0 NDFIP1
SE_01_008700575 chr5:142078769-142110870 Sample_01_0087 Thyroid gland thyroid-gland 575 6 852 125 3 45 171 NDFIP1
SE_01_010500783 chr5:142079733-142098940 Sample_01_0105 Thyroid gland thyroid gland_54y 783 6 512 73 0 5 0 NDFIP1
SE_02_104301351 chr5:142081436-142148731 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1351 25 1826 243 26 120 393 NDFIP1
SE_02_023400689 chr5:142081859-142161857 Sample_02_0234 Tonsil Th17 689 20 2144 278 34 161 591 NDFIP1
SE_02_104700807 chr5:142085303-142164483 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 807 30 2123 268 34 161 591 NDFIP1
SE_02_104000199 chr5:142087824-142142864 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 199 16 1495 191 19 107 352 NDFIP1
SE_02_104900716 chr5:142087858-142155649 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 716 44 1812 229 30 145 591 NDFIP1
SE_00_004400673 chr5:142087861-142110743 Sample_00_0044 Cord blood T-cell 673 4 593 84 3 44 171 NDFIP1
SE_02_023300717 chr5:142087974-142134234 Sample_02_0233 Tonsil Th1 717 10 1272 165 15 74 244 NDFIP1
SE_02_103601439 chr5:142092497-142117030 Sample_02_1036 Mammary gland HCC70_XY018 1439 14 673 89 6 49 171 NDFIP1
SE_02_103501945 chr5:142093164-142117043 Sample_02_1035 Mammary gland HCC70_Vehicle 1945 10 655 88 6 49 171 NDFIP1
SE_00_000700424 chr5:142093268-142121462 Sample_00_0007 Blood naive thymus-derived CD4-positive,alpha-beta T cell 424 3 789 107 8 49 171 NDFIP1
SE_02_002600501 chr5:142093862-142106548 Sample_02_0026 Blood CD4donorE 501 9 338 52 2 12 0 NDFIP1
SE_02_002200365 chr5:142094859-142129435 Sample_02_0022 Blood CD8donorA 365 14 952 126 11 61 171 NDFIP1
SE_02_053001099 chr5:142095428-142120550 Sample_02_0530 Mammary gland MCF10A 1099 7 699 96 7 45 171 NDFIP1
SE_02_083600693 chr5:142095731-142136605 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 693 14 1140 150 18 77 278 NDFIP1
SE_02_083501103 chr5:142103980-142135834 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 1103 9 895 116 15 76 264 NDFIP1
SE_02_109500658 chr5:142104298-142119038 Sample_02_1095 Blood CD34 Erythroid cells_Don002 658 3 419 55 5 44 171 NDFIP1
SE_02_001600571 chr5:142105108-142135004 Sample_02_0016 Blood erythroblasts 571 4 849 108 15 71 244 NDFIP1
SE_02_101800268 chr5:142106718-142133211 Sample_02_1018 Erythroblast CD34+ Hematopoietic stem/progenitor cells_12 days 268 8 760 92 10 57 244 NDFIP1
SE_02_083400688 chr5:142107939-142137771 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 688 10 838 106 16 68 306 NDFIP1
SE_02_049400925 chr5:142108228-142124181 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 925 2 464 58 8 34 171 NDFIP1
SE_01_011100290 chr5:142149232-142187770 Sample_01_0111 Brain SK-N-SH 290 11 1094 95 17 96 198 NDFIP1
SE_02_149900099 chr5:142149530-142192244 Sample_02_1499 Brain BE_2_-C 99 16 1218 114 16 98 198 NDFIP1
SE_02_124600094 chr5:142149844-142206111 Sample_02_1246 Brain LAN5_ATRA 94 30 1649 167 20 123 198 NDFIP1
SE_02_031200209 chr5:142150974-142206675 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 209 3 1634 165 19 123 198 NDFIP1
SE_02_029600284 chr5:142151675-142187999 Sample_02_0296 Neuroblastoma CLB-BER-Lud 284 3 1041 86 14 95 192 NDFIP1
SE_02_031400360 chr5:142151827-142188553 Sample_02_0314 Neuroblastoma SK-N-FI 360 4 1060 86 14 90 182 NDFIP1
SE_02_025300073 chr5:142151970-142207252 Sample_02_0253 Brain BE2C_DMSO 73 6 1641 169 18 109 178 NDFIP1
SE_02_034100272 chr5:142151992-142188492 Sample_02_0341 Autonomic ganglia SH-SY5Y_untreat 272 4 1057 86 14 79 178 NDFIP1
SE_02_075600706 chr5:142152032-142191041 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 706 14 1134 98 14 76 176 NDFIP1
SE_02_042100065 chr5:142152057-142192528 Sample_02_0421 Brain BE2C_3 65 6 1169 108 15 80 169 NDFIP1
SE_02_033900128 chr5:142152061-142187449 Sample_02_0339 Neuroblastoma NGP 128 8 1018 84 14 75 169 NDFIP1
SE_02_022000129 chr5:142152072-142187552 Sample_02_0220 Brain BE2C_1 129 9 1023 84 14 75 169 NDFIP1
SE_02_003800301 chr5:142152081-142197593 Sample_02_0038 Embryo DE 301 12 1304 121 15 90 166 NDFIP1
SE_02_075201286 chr5:142152106-142177190 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 1286 7 703 64 13 38 166 NDFIP1
SE_02_101601022 chr5:142152219-142192236 Sample_02_1016 Embryo H9_Mesendoderm_24h 1022 11 1164 105 14 76 160 NDFIP1,SPRY4
SE_02_031900483 chr5:142152245-142188394 Sample_02_0319 Neuroblastoma NB-EBc1 483 7 1048 84 14 74 159 NDFIP1
SE_02_003600315 chr5:142152409-142246598 Sample_02_0036 Embryo H7 315 16 2800 254 20 181 147 NDFIP1
SE_02_110300093 chr5:142152576-142238766 Sample_02_1103 Brain NB-1643 93 32 2574 244 19 164 119 NDFIP1
SE_02_075701176 chr5:142152611-142191321 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 1176 11 1127 97 14 74 118 NDFIP1
SE_02_150000235 chr5:142152657-142188525 Sample_02_1500 Brain KELLY_untreat 235 11 1043 84 14 73 114 NDFIP1
SE_02_110900249 chr5:142152665-142192063 Sample_02_1109 Brain SK-N-FI 249 12 1144 101 14 75 113 NDFIP1
SE_02_054000228 chr5:142152668-142191747 Sample_02_0540 Brain SK-N-BE_2_-C_PI3K_engineered 228 12 1135 99 14 75 113 NDFIP1
SE_02_053600049 chr5:142153822-142188104 Sample_02_0536 Brain SK-N-BE_2_-C_resistant_vehicle 49 16 999 80 13 71 53 NDFIP1
SE_02_110500257 chr5:142154781-142246972 Sample_02_1105 Brain NBL-S 257 27 2764 247 19 179 0 NDFIP1
SE_00_002400573 chr5:142155705-142197371 Sample_00_0024 Embryo mesendoderm 573 8 1206 108 14 86 0 NDFIP1
SE_02_075300634 chr5:142156775-142192024 Sample_02_0753 Embryo ES-derived progenitors_FG type 634 11 1041 88 12 72 0 NDFIP1
SE_02_074300043 chr5:142156780-142187562 Sample_02_0743 Embryo ES derived mesoderm_day2 43 11 908 69 12 70 0 NDFIP1
SE_02_124500086 chr5:142160615-142192187 Sample_02_1245 Brain LAN5_Ethanol 86 16 947 82 10 59 0 NDFIP1
SE_02_110400289 chr5:142164071-142190926 Sample_02_1104 Brain NB-69 289 9 814 63 9 55 0 NDFIP1
SE_02_030600455 chr5:142164100-142188466 Sample_02_0306 Autonomic ganglia SH-SY5Y 455 3 740 52 9 55 0 NDFIP1
SE_02_004400581 chr5:142165287-142191221 Sample_02_0044 Embryo endodermal CyT49_ES_D5 581 6 793 62 8 56 0 NDFIP1
SE_02_025100471 chr5:142165968-142188327 Sample_02_0251 Autonomic ganglia SH-SY5Y-MYCN-OFF 471 5 689 47 8 55 0 NDFIP1
SE_02_004300520 chr5:142166017-142187375 Sample_02_0043 Embryo endodermal CyT49_ES_D2 520 5 655 46 8 55 0 NDFIP1
SE_02_029700577 chr5:142166044-142188141 Sample_02_0297 Neuroblastoma CLB-CAR 577 4 676 47 8 55 0 NDFIP1
SE_02_030800447 chr5:142166053-142187544 Sample_02_0308 Neuroblastoma SJNB1 447 3 661 46 8 55 0 NDFIP1
SE_02_074501460 chr5:142166131-142191159 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 1460 9 771 60 8 56 0 NDFIP1
SE_02_123500266 chr5:142166383-142200526 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 266 13 1034 99 11 73 0 NDFIP1
SE_02_106400744 chr5:142166673-142187330 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 744 10 638 44 8 54 0 NDFIP1
SE_02_029900412 chr5:142167459-142187817 Sample_02_0299 Neuroblastoma CLB-MA 412 2 635 44 8 51 0 NDFIP1
SE_02_007600728 chr5:142167553-142187569 Sample_02_0076 Autonomic ganglia SH-SY5Y_DMSO_3h 728 8 625 44 8 51 0 NDFIP1
SE_02_007500247 chr5:142167579-142188263 Sample_02_0075 Autonomic ganglia kelly_DMSO_3h 247 6 645 45 8 51 0 NDFIP1
SE_02_106300501 chr5:142167737-142187734 Sample_02_1063 Brain CLB-GA-control 501 10 620 44 8 51 0 NDFIP1
SE_02_074400715 chr5:142167842-142190830 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 715 8 715 56 8 51 0 NDFIP1
SE_02_007800073 chr5:142169675-142187615 Sample_02_0078 Neuroblastoma low-MYCN-Neuroblastoma-patient-cells 73 14 555 36 7 39 0 NDFIP1
SE_02_104602133 chr5:142175315-142230601 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2133 14 1710 172 6 120 0 NDFIP1
SE_02_127400069 chr5:142185983-142223960 Sample_02_1274 Prostate PC3_DMSO 69 30 1173 138 4 103 0 NDFIP1
SE_01_002600632 chr5:142191428-142203570 Sample_01_0026 Umbilical vein endothelial-cell-of-umbilical-vein 632 3 380 53 4 18 0 NDFIP1
SE_02_153600609 chr5:142191724-142216912 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 609 8 790 99 4 50 0 NDFIP1
Genomic distribution of SEs associated with NDFIP1
Genome Browser

The strength of the tissue affected by the gene

Expression of NDFIP1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)