SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000263389
Gene: MIR3973 Gene type: miRNA
Strand: + External links:
Genomic region: chr11:36010098-36010204 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_117800005 chr11:35894083-36135225 Sample_02_1178 Brain GBM07 5 63 7046 126 19 749 874 LDLRAD3,MIR3973
SE_02_120200022 chr11:35942425-36168026 Sample_02_1202 Brain GBM38 22 108 6582 106 24 695 874 LDLRAD3,MIR3973
SE_02_085700005 chr11:35942650-36259300 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 5 84 9128 249 38 1028 1386 LDLRAD3,MIR3973,PRR5L,COMMD9
SE_02_097100054 chr11:35943480-36048871 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 54 50 3025 59 7 364 274 LDLRAD3,MIR3973
SE_02_124200153 chr11:35946049-36042458 Sample_02_1242 Skin UISO_virus_negative 153 51 2760 55 7 326 123 LDLRAD3,MIR3973
SE_02_084000036 chr11:35947733-36078580 Sample_02_0840 Embryo hNPCs_R1159Q/+ 36 35 3792 65 10 388 601 LDLRAD3,MIR3973
SE_02_118601011 chr11:35950014-36017292 Sample_02_1186 Brain GBM15 1011 12 1961 26 6 212 38 LDLRAD3,MIR3973
SE_02_125300364 chr11:35952187-36038843 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 364 37 2494 50 7 308 123 LDLRAD3,MIR3973
SE_02_101500050 chr11:35965313-36131475 Sample_02_1015 Embryo H9_ Undifferentiated 50 32 4933 76 13 470 723 LDLRAD3,MIR3973
SE_02_141300283 chr11:35966414-36042141 Sample_02_1413 Muscle RH4_sgBRG1 283 21 2158 44 3 283 123 LDLRAD3,MIR3973
SE_02_045300335 chr11:35977726-36057379 Sample_02_0453 Neuroblastoma SJNB3 335 27 2292 37 3 292 123 LDLRAD3,MIR3973
SE_02_096900334 chr11:35981570-36053984 Sample_02_0969 Brain H3.3K27M_PL637 334 15 2086 33 2 262 123 LDLRAD3,MIR3973
SE_02_079400007 chr11:35981615-36031881 Sample_02_0794 Brain 1552 7 7 1424 24 0 201 38 LDLRAD3,MIR3973
SE_02_117600523 chr11:35981864-36019673 Sample_02_1176 Brain GBM04 523 11 1081 7 0 149 38 LDLRAD3,MIR3973
SE_02_097900488 chr11:35982196-36044124 Sample_02_0979 Brain JN14-BS1_H3.3K27M 488 18 1761 31 1 242 123 LDLRAD3,MIR3973
SE_02_152200606 chr11:35986057-36014890 Sample_02_1522 Skin A375 RTKi 606 6 842 4 0 99 38 LDLRAD3,MIR3973
SE_02_152100705 chr11:35986162-36013483 Sample_02_1521 Skin A375 DMSO 705 9 802 3 0 95 38 LDLRAD3,MIR3973
SE_02_149300133 chr11:35988650-36016259 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 133 10 809 2 0 121 38 LDLRAD3,MIR3973
SE_02_094901113 chr11:35996159-36042967 Sample_02_0949 Umbilical artery HUAEC_WT 1113 10 1342 28 1 197 123 LDLRAD3,MIR3973
SE_02_117700084 chr11:35997848-36164922 Sample_02_1177 Brain GBM05 84 52 4937 75 18 514 723 LDLRAD3,MIR3973
SE_02_095600246 chr11:35997944-36074449 Sample_02_0956 Brain IDH1_2658 246 22 2221 38 4 267 519 LDLRAD3,MIR3973
SE_02_118100693 chr11:35997970-36048955 Sample_02_1181 Brain GBM10 693 17 1487 29 1 200 123 LDLRAD3,MIR3973
SE_01_011500706 chr11:36001500-36035618 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 706 9 980 27 0 161 38 LDLRAD3,MIR3973
SE_02_087500532 chr11:36001985-36074705 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 532 26 2087 39 4 259 519 LDLRAD3,MIR3973
SE_02_149200954 chr11:36002109-36057077 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 954 16 1584 32 2 222 123 LDLRAD3,MIR3973
SE_02_074100975 chr11:36019312-36035834 Sample_02_0741 Muscle RH30 975 3 489 23 0 67 0 LDLRAD3,MIR3973
SE_02_059400227 chr11:36024312-36131778 Sample_02_0594 iPSC-derived neural progenitors 227 23 3259 47 11 248 685 LDLRAD3,MIR3973
SE_02_155900383 chr11:36031248-36096798 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 383 19 1935 20 6 129 624 LDLRAD3,MIR3973
SE_02_101700215 chr11:36048729-36162614 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 215 24 3395 45 17 277 600 LDLRAD3,MIR3973
SE_02_130900642 chr11:36056383-36089252 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 642 4 974 9 3 47 539 LDLRAD3,MIR3973
SE_02_130800456 chr11:36056609-36089335 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 456 6 971 9 3 47 539 LDLRAD3,MIR3973
SE_02_097800078 chr11:36062214-36132890 Sample_02_0978 Brain 2168_IDH1 78 23 2180 28 9 149 600 LDLRAD3,MIR3973
SE_02_079400028 chr11:36062359-36089307 Sample_02_0794 Brain 1552 28 6 812 8 3 35 539 LDLRAD3,MIR3973
SE_02_156700186 chr11:36069433-36112217 Sample_02_1567 iPSCs CiPSC 186 8 1315 9 6 44 204 LDLRAD3,MIR3973
SE_02_116000124 chr11:36069666-36112654 Sample_02_1160 Embryo H1_shLuc 124 14 1313 9 6 43 204 LDLRAD3,MIR3973
SE_02_097100164 chr11:36069888-36164307 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 164 35 2827 37 16 238 204 LDLRAD3,MIR3973
SE_02_138400090 chr11:36072021-36164550 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 90 19 2766 37 15 243 204 LDLRAD3,MIR3973,COMMD9
SE_02_094901124 chr11:36072355-36135336 Sample_02_0949 Umbilical artery HUAEC_WT 1124 26 1936 26 8 131 204 LDLRAD3,MIR3973
SE_02_101600776 chr11:36073178-36111829 Sample_02_1016 Embryo H9_Mesendoderm_24h 776 5 1194 9 5 41 204 LDLRAD3,MIR3973
SE_02_152700627 chr11:36073231-36106248 Sample_02_1527 Embryo naive embryonic stem cell 627 12 1022 5 5 31 204 LDLRAD3,MIR3973
SE_04_000100479 chr11:36077366-36117024 Sample_04_0001 Blood heat shocked K562 479 5 1235 10 6 59 204 LDLRAD3,MIR3973
SE_02_157200544 chr11:36086352-36111950 Sample_02_1572 iPSCs FiPSC 544 6 793 6 3 31 61 LDLRAD3,MIR3973
SE_02_157000421 chr11:36086529-36112019 Sample_02_1570 iPSCs EiPSC 421 6 786 6 3 31 61 LDLRAD3,MIR3973
SE_02_056000154 chr11:36086550-36112639 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 154 10 794 6 3 31 61 LDLRAD3,MIR3973
SE_02_122900656 chr11:36087557-36131400 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 656 29 1381 18 6 105 61 LDLRAD3,MIR3973
SE_02_096900586 chr11:36087933-36132525 Sample_02_0969 Brain H3.3K27M_PL637 586 17 1396 18 6 114 61 LDLRAD3,MIR3973
SE_02_087500415 chr11:36088235-36159671 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 415 30 2133 31 13 172 61 LDLRAD3,MIR3973
SE_04_000200929 chr11:36088240-36119312 Sample_04_0002 Blood cold shocked K562 929 7 959 10 5 53 61 LDLRAD3,MIR3973
SE_02_109600127 chr11:36088369-36110869 Sample_02_1096 Blood CD34 Erythroid cells_Don003 127 4 683 5 3 28 61 LDLRAD3,MIR3973
SE_02_109500143 chr11:36088389-36117176 Sample_02_1095 Blood CD34 Erythroid cells_Don002 143 7 888 9 5 49 61 LDLRAD3,MIR3973
SE_02_095001388 chr11:36088549-36166461 Sample_02_0950 Umbilical vein HUVEC_WT 1388 24 2316 34 13 247 61 LDLRAD3,MIR3973
SE_02_057601054 chr11:36088620-36131669 Sample_02_0576 Blood HEL_sgLKB1e2 1054 17 1356 18 6 106 61 LDLRAD3,MIR3973
SE_02_103300287 chr11:36088745-36111032 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 287 5 680 5 3 31 61 LDLRAD3,MIR3973
SE_02_058001189 chr11:36088851-36131501 Sample_02_0580 Blood HEL_sgSIK3e4 1189 16 1344 18 6 106 61 LDLRAD3,MIR3973
SE_02_082200440 chr11:36089604-36106390 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 440 6 520 2 3 20 61 LDLRAD3,MIR3973
SE_02_082100510 chr11:36089968-36107185 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 510 3 532 2 3 20 61 LDLRAD3,MIR3973
SE_02_082300382 chr11:36090074-36106618 Sample_02_0823 Haematopoietic and lymphoid tissue SET-2_insR_GSK-LSD1 382 4 516 2 2 19 61 LDLRAD3,MIR3973
SE_02_082000340 chr11:36090086-36107194 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 340 3 528 2 2 19 61 LDLRAD3,MIR3973
SE_02_111600382 chr11:36090132-36115481 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 382 7 792 9 4 45 61 LDLRAD3,MIR3973
SE_02_054501079 chr11:36090167-36116358 Sample_02_0545 Bone marrow K562 WT 1079 9 818 9 4 46 61 LDLRAD3,MIR3973
SE_02_054700312 chr11:36090307-36106350 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 312 7 504 2 2 19 61 LDLRAD3,MIR3973
SE_02_055900688 chr11:36090421-36111749 Sample_02_0559 iPSCs FX52 iPSCs dC-T 688 7 666 6 2 29 61 LDLRAD3,MIR3973
SE_02_054600340 chr11:36090611-36107363 Sample_02_0546 Bone marrow K562_MYO1D Non-hub KO 340 9 521 2 2 18 61 LDLRAD3,MIR3973
SE_02_067700149 chr11:36090734-36112008 Sample_02_0677 Embryo H1 hESC-derived neural progenitor cells_Smad_6hr 149 10 670 6 2 28 61 LDLRAD3,MIR3973
SE_02_074400494 chr11:36091046-36106197 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 494 4 476 2 2 17 61 LDLRAD3,MIR3973
SE_02_117200443 chr11:36091157-36112965 Sample_02_1172 Embryo H9 WT 443 3 666 6 2 27 61 LDLRAD3,MIR3973
SE_02_116100102 chr11:36091792-36123855 Sample_02_1161 Embryo H1_shZNF587 102 6 1009 15 5 60 61 LDLRAD3,MIR3973
SE_02_067600148 chr11:36092050-36112463 Sample_02_0676 Embryo H1 hESC-derived neural progenitor cells_Smad_3hr 148 6 639 6 2 27 61 LDLRAD3,MIR3973
SE_02_068000102 chr11:36092090-36112891 Sample_02_0680 Embryo H1 hESC-derived neural progenitor cells_Smad_48hr 102 12 646 6 2 26 61 LDLRAD3,MIR3973
SE_02_074200242 chr11:36092503-36111861 Sample_02_0742 Embryo ESCs_day0 242 4 615 6 2 26 61 LDLRAD3,MIR3973
SE_02_067800214 chr11:36092857-36111796 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 214 6 599 6 2 26 61 LDLRAD3,MIR3973
SE_02_068100109 chr11:36097368-36112554 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 109 7 491 6 2 24 61 LDLRAD3,MIR3973
SE_01_009500129 chr11:36103620-36112393 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 129 2 265 4 1 13 0 LDLRAD3,MIR3973
SE_00_004800020 chr11:36104033-36112616 Sample_00_0048 Embryo neuronal stem cell originated from H1 20 5 260 4 1 13 0 LDLRAD3,MIR3973
SE_01_011600025 chr11:36104408-36111351 Sample_01_0116 Embryo H1-hESC 25 6 196 3 1 13 0 LDLRAD3,MIR3973
SE_02_079400040 chr11:36104531-36132702 Sample_02_0794 Brain 1552 40 8 883 17 4 96 0 LDLRAD3,MIR3973
SE_02_067900541 chr11:36104732-36111947 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 541 5 227 4 1 13 0 LDLRAD3,MIR3973
SE_02_063300268 chr11:36122693-36168002 Sample_02_0633 Gastrointestinal Stromal GIST-48B_Imatinib 268 20 1300 19 7 190 0 LDLRAD3,MIR3973
SE_02_063200190 chr11:36122699-36169032 Sample_02_0632 Gastrointestinal Stromal GIST-48B_DMSO 190 16 1326 19 7 217 0 LDLRAD3,MIR3973
SE_02_096700215 chr11:36123397-36163809 Sample_02_0967 Brain H3.3K27M_JN57 215 16 1175 19 7 160 0 LDLRAD3,MIR3973
SE_02_049200690 chr11:36143204-36153359 Sample_02_0492 Pharyng Detroit 562_LPS 690 4 279 7 2 0 0 LDLRAD3,MIR3973
SE_02_049100798 chr11:36143281-36153086 Sample_02_0491 Pharyng Detroit 562-Control 798 6 271 7 2 0 0 LDLRAD3,MIR3973
Genomic distribution of SEs associated with MIR3973
Genome Browser

The strength of the tissue affected by the gene

Expression of MIR3973

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)