SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000124466
Gene: LYPD3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:43460787-43465608 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_136200689 chr19:43412197-43472771 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 689 15 1700 181 2 70 1321 LYPD3,TEX101,PHLDB3
SE_02_136100878 chr19:43412817-43472660 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 878 13 1682 180 2 70 1321 LYPD3,TEX101,PHLDB3
SE_02_124200163 chr19:43421784-43472582 Sample_02_1242 Skin UISO_virus_negative 163 21 1445 170 1 65 905 LYPD3,TEX101,PHLDB3
SE_02_071200678 chr19:43424297-43477206 Sample_02_0712 Pancreas BxPC3_sgNEG 678 16 1523 181 1 78 1079 LYPD3,PHLDB3,TEX101
SE_02_136600552 chr19:43424415-43475896 Sample_02_1366 Pancreas BxPC3-untreated 552 15 1487 179 1 78 1079 LYPD3,PHLDB3,TEX101
SE_02_151000442 chr19:43424434-43475744 Sample_02_1510 Lung H3122_LR_Pano 442 17 1481 179 1 78 1079 LYPD3,PHLDB3,TEX101
SE_02_071300729 chr19:43424461-43477224 Sample_02_0713 Pancreas BxPC3_sgTP63 729 20 1517 181 1 78 1079 LYPD3,PHLDB3,TEX101
SE_02_136000683 chr19:43424811-43472746 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 683 16 1373 168 1 65 905 LYPD3,TEX101,PHLDB3
SE_01_010700483 chr19:43425434-43476184 Sample_01_0107 Esophagus esophagus squamous epithelium 483 7 1464 177 1 78 1079 LYPD3,PHLDB3,TEX101,ZNF575
SE_02_088601523 chr19:43425463-43472562 Sample_02_0886 Skin foreskin_ p63KLF4 1523 9 1358 167 1 65 905 LYPD3,TEX101,PHLDB3
SE_02_125300705 chr19:43425853-43476665 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 705 19 1471 177 1 78 1079 LYPD3,PHLDB3,TEX101
SE_02_104800215 chr19:43428809-43513418 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 215 29 2360 277 3 214 3250 LYPD3,ETHE1,PHLDB3,TEX101,ZNF575
SE_02_082700394 chr19:43428860-43459729 Sample_02_0827 Stomach normal gastric 394 5 906 117 1 9 0 TEX101,PHLDB3,LYPD3
SE_02_010500298 chr19:43430013-43476124 Sample_02_0105 Skin neonatal_keratinocytes 298 6 1330 159 0 78 1079 LYPD3,PHLDB3,TEX101
SE_02_045400730 chr19:43430355-43476001 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 730 17 1313 156 0 78 1079 LYPD3,PHLDB3,TEX101
SE_02_009900294 chr19:43437858-43476175 Sample_02_0099 Foreskin Epidermal-Stem-Cells_shDNMT3B 294 7 1080 123 0 78 1079 LYPD3,PHLDB3,TEX101
SE_02_070700783 chr19:43438830-43475907 Sample_02_0707 Pancreas BxPC3 WT 783 12 1042 121 0 78 1079 LYPD3,PHLDB3,TEX101
SE_02_009700638 chr19:43452150-43476019 Sample_02_0097 Foreskin Epidermal-Stem-Cells_shCTRL 638 8 666 60 0 71 1079 LYPD3,PHLDB3,TEX101
SE_02_113100770 chr19:43452359-43475922 Sample_02_1131 Pancreas T3M4 wt 770 11 662 60 0 71 1079 LYPD3,PHLDB3,TEX101
SE_00_001100431 chr19:43455003-43475951 Sample_00_0011 Esophagus esophagus 431 5 576 57 0 71 1079 LYPD3,PHLDB3,TEX101
SE_03_000300171 chr19:43455251-43476137 Sample_03_0003 Foreskin foreskin-keratinocyte-calcium5.5day 171 5 574 56 0 71 1079 LYPD3,PHLDB3,TEX101
SE_02_124800712 chr19:43455456-43471959 Sample_02_1248 Bladder RT4 712 3 450 42 0 58 905 LYPD3,PHLDB3,TEX101
SE_02_125400472 chr19:43455861-43475809 Sample_02_1254 Bladder Bladder tumor Basal1 472 5 547 55 0 70 1079 LYPD3,PHLDB3,TEX101
SE_02_104602013 chr19:43461426-43502315 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2013 12 1111 114 2 140 2242 LYPD3,PHLDB3,ETHE1,TEX101,ZNF575
SE_00_000700304 chr19:43461739-43476876 Sample_00_0007 Blood naive thymus-derived CD4-positive,alpha-beta T cell 304 2 425 42 0 62 853 LYPD3,PHLDB3,TEX101
SE_02_123900054 chr19:43462145-43504145 Sample_02_1239 Skin Waga_virus_positive 54 17 1123 120 2 131 2236 LYPD3,PHLDB3,ETHE1,TEX101,ZNF575
SE_02_059100420 chr19:43462699-43476202 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 420 4 379 38 0 54 718 LYPD3,PHLDB3,TEX101
SE_02_002600355 chr19:43462721-43476918 Sample_02_0026 Blood CD4donorE 355 6 396 38 0 54 715 LYPD3,PHLDB3,TEX101
SE_02_123600223 chr19:43462758-43504127 Sample_02_1236 Skin MKL1_virus_positive 223 11 1108 116 2 131 2140 LYPD3,PHLDB3,ETHE1,TEX101,ZNF575
SE_02_059300180 chr19:43462823-43476100 Sample_02_0593 Fetal spleenocytes fetal naive T cells 180 4 375 37 0 54 696 LYPD3,PHLDB3,TEX101
Genomic distribution of SEs associated with LYPD3
Genome Browser

The strength of the tissue affected by the gene

Expression of LYPD3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)