SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000181817
Gene: LSM10 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:36391238-36397908 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077500646 chr1:36363600-36427520 Sample_02_0775 Pancreas EndoC-BH1_SE 646 18 1785 248 6 159 906 STK40,LSM10,OSCP1,EVA1B,MRPS15
SE_02_146700118 chr1:36363821-36420885 Sample_02_1467 Blood HUDEP-2_LRFKO 118 9 1606 212 6 143 749 STK40,LSM10,OSCP1,EVA1B,MRPS15
SE_02_013100533 chr1:36365198-36421721 Sample_02_0131 Lung 1015_PT 533 9 1588 211 6 141 749 OSCP1,LSM10,STK40,MRPS15,FAM176B
SE_02_131900120 chr1:36368302-36421282 Sample_02_1319 Connective Tissue HT1080_DDIT3 120 19 1477 204 5 132 672 STK40,LSM10,OSCP1,EVA1B,MRPS15,SH3D21
SE_02_050500717 chr1:36368855-36421393 Sample_02_0505 Esophagus KYSE70_1 717 15 1464 203 5 132 672 STK40,LSM10,OSCP1,EVA1B,MRPS15
SE_02_051600719 chr1:36368855-36421393 Sample_02_0516 Esophagus KYSE70 719 15 1464 203 5 132 672 STK40,LSM10,OSCP1,EVA1B,MRPS15
SE_02_050600460 chr1:36368891-36421498 Sample_02_0506 Esophagus TE5_1 460 16 1465 202 5 132 672 STK40,LSM10,OSCP1,EVA1B,MRPS15
SE_02_051700453 chr1:36368892-36421497 Sample_02_0517 Esophagus TE5 453 17 1465 202 5 132 672 STK40,LSM10,OSCP1,EVA1B,MRPS15
SE_02_122700383 chr1:36369306-36420911 Sample_02_1227 Bone marrow U266 383 12 1448 201 5 124 672 STK40,LSM10,OSCP1,EVA1B,MRPS15
SE_02_045300845 chr1:36369351-36421419 Sample_02_0453 Neuroblastoma SJNB3 845 13 1453 202 5 124 672 STK40,LSM10,OSCP1,EVA1B,MRPS15
SE_02_107400120 chr1:36369723-36421431 Sample_02_1074 Lymphoma BC-1 120 11 1445 202 5 124 672 STK40,LSM10,OSCP1,EVA1B,MRPS15
SE_02_078000532 chr1:36369768-36418656 Sample_02_0780 Liver SMMC-7721 532 17 1366 194 5 116 562 STK40,LSM10,OSCP1,EVA1B,MRPS15
SE_02_074600399 chr1:36370093-36421401 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 399 14 1433 202 5 124 672 STK40,LSM10,OSCP1,EVA1B,MRPS15
SE_02_057600237 chr1:36370192-36421484 Sample_02_0576 Blood HEL_sgLKB1e2 237 10 1431 202 5 123 672 STK40,LSM10,OSCP1,EVA1B,MRPS15
SE_02_127300770 chr1:36371241-36420254 Sample_02_1273 Cervix HeLa 770 7 1375 193 4 117 619 STK40,LSM10,OSCP1,EVA1B,MRPS15
SE_02_058000219 chr1:36371367-36421445 Sample_02_0580 Blood HEL_sgSIK3e4 219 7 1399 196 4 123 672 STK40,LSM10,OSCP1,EVA1B,MRPS15
SE_02_057900212 chr1:36371428-36421273 Sample_02_0579 Blood HEL_sgNeg2 212 12 1392 196 4 123 672 STK40,LSM10,OSCP1,EVA1B,MRPS15
SE_01_003900010 chr1:36371433-36412673 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 10 6 1153 167 4 111 462 LSM10,STK40,OSCP1,FAM176B,FA176B,LS10,RPS15
SE_02_113000208 chr1:36371598-36412662 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 208 4 1150 167 4 111 462 STK40,LSM10,EVA1B,OSCP1
SE_02_138800234 chr1:36371738-36417475 Sample_02_1388 Peripheral blood JB6_ALK+ 234 12 1283 184 4 112 462 STK40,LSM10,EVA1B,OSCP1,MRPS15
SE_02_024000442 chr1:36372930-36412722 Sample_02_0240 Colon V429_2 442 5 1120 166 4 111 462 LSM10,STK40,OSCP1,FAM176B
SE_02_002100685 chr1:36372975-36412904 Sample_02_0021 Colon V429 685 4 1128 166 4 111 462 LSM10,STK40,OSCP1,FAM176B
SE_02_143400365 chr1:36373711-36446977 Sample_02_1434 Trophoblast trophoblast stem cells 365 12 1984 318 7 168 1099 OSCP1,STK40,LSM10,CSF3R,EVA1B,MRPS15
SE_02_107500115 chr1:36374036-36421527 Sample_02_1075 Lymphoma BC-3 115 11 1335 194 4 116 672 STK40,LSM10,OSCP1,EVA1B,MRPS15
SE_02_078100316 chr1:36382791-36403134 Sample_02_0781 Lymphoma Pfeiffer_DMSO 316 1 568 84 3 80 462 STK40,LSM10,OSCP1
SE_02_103200255 chr1:36383879-36442251 Sample_02_1032 Head and neck SCC1 JQ1 255 19 1596 282 5 129 1070 OSCP1,STK40,LSM10,CSF3R,MRPS15
SE_02_103100462 chr1:36405424-36441661 Sample_02_1031 Head and neck SCC1 contol 462 12 999 190 2 49 608 OSCP1,CSF3R,LSM10,MRPS15,STK40
Genomic distribution of SEs associated with LSM10
Genome Browser

The strength of the tissue affected by the gene

Expression of LSM10

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)