SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID:
Gene: LOC645752 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_004000986 chr15:77809397-77833094 Sample_02_0040 Embryo PFG 986 3 690 78 2 157 0 LOC645752,LOC91450
SE_02_037600285 chr15:77852835-77866007 Sample_02_0376 Skeletal muscle RMS237 285 2 484 38 0 25 0 LOC645752,LOC91450
SE_02_104600062 chr15:77855012-78008874 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 62 81 5807 803 7 642 2913 LOC91450,TBC1D2B,LOC645752,LINGO1
SE_02_039601161 chr15:77857021-77911106 Sample_02_0396 Skin NHEK-D 1161 17 2066 316 2 408 170 LOC645752,LOC91450
SE_02_096100015 chr15:77857466-77903125 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 15 27 1713 232 2 328 83 LINGO1,LOC645752
SE_02_133100188 chr15:77858235-77910856 Sample_02_1331 Blood Molm13_CTRL 188 19 2016 311 2 399 170 LINGO1,LOC645752
SE_02_033200247 chr15:77858255-77895709 Sample_02_0332 Haematopoietic and lymphoid tissue MOLM14_DMSO_9 247 7 1327 149 2 202 0 LOC645752,LOC91450
SE_02_033500314 chr15:77858281-77893734 Sample_02_0335 Haematopoietic and lymphoid tissue MOLM14_CA25_12 314 4 1253 140 2 198 0 LOC645752,LOC91450
SE_02_033300219 chr15:77858333-77895553 Sample_02_0333 Haematopoietic and lymphoid tissue MOLM14_DMSO_10 219 5 1323 148 2 202 0 LOC645752,LOC91450
SE_02_033400355 chr15:77858372-77895713 Sample_02_0334 Haematopoietic and lymphoid tissue MOLM14_CA25_11 355 8 1321 149 2 202 0 LOC645752,LOC91450
SE_02_014400192 chr15:77858420-77896121 Sample_02_0144 Peripheral blood MV411_DMSO 192 4 1324 151 2 204 0 LOC645752,LOC91450
SE_02_105801205 chr15:77859766-77893383 Sample_02_1058 Bone A673_SA2 Rescue 1205 20 1181 131 2 193 0 LINGO1,LOC645752
SE_02_124900176 chr15:77861982-77910792 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 176 17 1853 302 2 389 170 LINGO1,LOC645752
SE_02_037400050 chr15:77861992-77900782 Sample_02_0374 Skeletal muscle RMS209 50 8 1435 203 2 301 83 LOC645752,LOC91450
SE_02_110500310 chr15:77862427-77910823 Sample_02_1105 Brain NBL-S 310 30 1838 301 2 389 170 LINGO1,LOC645752
SE_02_107900227 chr15:77862872-77895677 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 227 14 1122 137 2 187 0 LINGO1,LOC645752
SE_02_114200110 chr15:77862921-77894012 Sample_02_1142 Peripheral nerve MPNST642_PRC2 mutant 110 22 1054 128 2 183 0 LINGO1,LOC645752
SE_02_021600071 chr15:77863123-77908695 Sample_02_0216 Skin NHEK_scramble 71 21 1695 272 2 358 83 LOC645752,LOC91450
SE_02_088600433 chr15:77863286-77910947 Sample_02_0886 Skin foreskin_ p63KLF4 433 16 1795 299 2 384 170 LINGO1,LOC645752
SE_02_107800409 chr15:77865129-77894783 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 409 12 999 124 2 183 0 LINGO1,LOC645752
SE_02_042300063 chr15:77865410-77909098 Sample_02_0423 Skin A375 63 12 1620 265 2 358 83 LOC645752,LOC91450
SE_02_087200372 chr15:77866390-77894617 Sample_02_0872 Colon HCT116_siCtrl-5FU 372 8 948 120 2 179 0 LINGO1,LOC645752
SE_02_006800026 chr15:77867532-77895410 Sample_02_0068 Skin A375_DMSO 26 8 937 121 1 178 0 LOC645752,LOC91450
SE_02_033100269 chr15:77867754-77893975 Sample_02_0331 Haematopoietic and lymphoid tissue MOLM14_untreated 269 4 868 113 1 174 0 LOC645752,LOC91450
SE_02_025600075 chr15:77868146-77907334 Sample_02_0256 Peripheral blood MV411 75 5 1434 237 1 331 83 LOC645752,LOC91450
SE_02_044600095 chr15:77868890-77909750 Sample_02_0446 Bone osteosarcoma tumor P2 95 14 1535 263 1 359 83 LINGO1,LOC645752
SE_02_000400175 chr15:77868936-77908730 Sample_02_0004 Mammary gland MCF-7_10Gygamma_7.5h 175 24 1488 252 1 347 83 LOC645752,LOC91450
SE_02_085800257 chr15:77869114-77893835 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 257 5 832 106 1 172 0 LINGO1,LOC645752
SE_02_044400382 chr15:77869267-77910867 Sample_02_0444 Bone osteosarcoma tumor P10 382 19 1581 277 1 373 170 LINGO1,LOC645752
SE_02_027500555 chr15:77869722-77911229 Sample_02_0275 Retina FW14 555 7 1576 274 1 373 170 LOC645752,LOC91450
SE_02_005600427 chr15:77869754-77906780 Sample_02_0056 Mammary gland HMEC 427 8 1360 214 1 326 83 LOC645752,LOC91450
SE_02_025300221 chr15:77869756-77911347 Sample_02_0253 Brain BE2C_DMSO 221 5 1581 279 1 373 170 LOC645752,LOC91450
SE_00_004300711 chr15:77869832-77894567 Sample_00_0043 Stomach stomach_96d 711 4 827 104 1 169 0 LOC645752,LOC91450
SE_02_001900176 chr15:77869946-77910929 Sample_02_0019 Embryo Neural crest cells 176 11 1558 271 1 368 170 LOC645752,LOC91450
SE_01_009200767 chr15:77869964-77907071 Sample_01_0092 Vagina vagina 767 7 1369 219 1 324 83 LOC645752,LOC91450
SE_02_037800423 chr15:77870021-77878445 Sample_02_0378 Skeletal muscle SCMC 423 1 286 28 1 65 0 LOC645752,LOC91450
SE_02_033900225 chr15:77870064-77892478 Sample_02_0339 Neuroblastoma NGP 225 5 742 86 1 161 0 LOC645752,LOC91450
SE_02_022000210 chr15:77870337-77892603 Sample_02_0220 Brain BE2C_1 210 3 747 87 1 161 0 LOC645752,LOC91450
SE_02_042100299 chr15:77870389-77895500 Sample_02_0421 Brain BE2C_3 299 5 854 104 1 171 0 LOC645752,LOC91450
SE_00_002600052 chr15:77870445-77894234 Sample_00_0026 Muscle of trunk muscle-of-trunk 52 5 802 100 1 167 0 LOC645752,LOC91450
SE_02_155300801 chr15:77870502-77921401 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 801 17 1977 364 2 394 1220 LOC645752,LINGO1
SE_00_002500210 chr15:77870602-77894285 Sample_00_0025 Muscle of leg muscle-of-leg 210 6 797 100 1 166 0 LOC645752,LOC91450
SE_02_117900390 chr15:77870614-77900419 Sample_02_1179 Brain GBM08 390 11 1113 166 1 279 83 LINGO1,LOC645752
SE_02_053300498 chr15:77870645-77910936 Sample_02_0533 Blood vessel Circle of Willis_54y 498 14 1540 269 1 365 170 LINGO1,LOC645752
SE_02_018501047 chr15:77870657-77894301 Sample_02_0185 Skin UACC257 1047 3 794 100 1 164 0 LOC645752,LOC91450
SE_02_021100810 chr15:77870669-77892639 Sample_02_0211 Lung MRC-5_NFD_1DPT 810 5 736 87 1 158 0 LOC645752,LOC91450
SE_02_097000388 chr15:77870685-77910953 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 388 15 1538 269 1 365 170 LINGO1,LOC645752
SE_02_053400497 chr15:77870765-77900463 Sample_02_0534 Blood vessel Circle of Willis_60y 497 18 1104 165 1 277 83 LINGO1,LOC645752
SE_02_118900454 chr15:77871108-77895174 Sample_02_1189 Brain GBM22 454 19 808 100 1 165 0 LOC645752
SE_02_087400170 chr15:77871131-77909825 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 170 7 1464 249 1 351 83 LOC645752
SE_02_096600405 chr15:77871265-77910839 Sample_02_0966 Brain H3.3K27M_JN29-BS3 405 16 1516 264 1 362 170 LOC645752,LINGO1
SE_02_096700944 chr15:77871382-77900618 Sample_02_0967 Brain H3.3K27M_JN57 944 7 1089 161 1 273 83 LOC645752,LINGO1
SE_02_074000700 chr15:77872417-77891814 Sample_02_0740 Muscle RH3 700 5 619 71 0 134 0 LOC645752
SE_02_037700139 chr15:77873665-77888559 Sample_02_0377 Skeletal muscle RMS238 139 3 443 49 0 112 0 LOC645752
SE_02_046501196 chr15:77874210-77892174 Sample_02_0465 Adipose subcutaneous adipocytes 1196 17 554 71 0 138 0 LOC645752,LINGO1
SE_01_007000163 chr15:77874397-77894677 Sample_01_0070 Ascending aorta ascending-aorta 163 2 636 87 0 147 0 LOC645752,LOC91450
SE_01_007300113 chr15:77874514-77909049 Sample_01_0073 Coronary artery coronary-artery 113 5 1267 229 0 321 83 LOC645752,LOC91450
SE_02_121200169 chr15:77874759-77895240 Sample_02_1212 Brain GBM30 169 10 655 88 0 150 0 LOC645752,LINGO1
SE_01_008600176 chr15:77874839-77900871 Sample_01_0086 Thoracic aorta thoracic-aorta 176 2 942 154 0 259 83 LOC645752,LOC91450
SE_02_061400812 chr15:77874864-77910894 Sample_02_0614 Liposarcoma MLPS_T2 812 17 1358 253 0 347 170 LOC645752,LINGO1
SE_01_009300398 chr15:77874870-77894697 Sample_01_0093 Aorta ascending aorta 398 5 631 86 0 146 0 LOC645752,LOC91450
SE_01_010200134 chr15:77874872-77891869 Sample_01_0102 Artery tibial artery 134 10 522 64 0 132 0 LOC645752,LINGO1
SE_02_043900222 chr15:77874940-77893384 Sample_02_0439 Bone Hu09 222 7 576 75 0 141 0 LOC645752,LOC91450
SE_02_044700356 chr15:77874991-77894857 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 356 14 634 86 0 150 0 LOC645752
SE_01_008900774 chr15:77875053-77894664 Sample_01_0089 Transverse colon transverse-colon 774 5 626 85 0 146 0 LOC645752,LOC91450
SE_02_044100362 chr15:77875092-77893331 Sample_02_0441 Bone M112 362 8 573 74 0 141 0 LOC645752
SE_02_036600437 chr15:77875127-77892462 Sample_02_0366 Skeletal muscle NCI0082 437 3 540 69 0 138 0 LOC645752,LOC91450
SE_01_008800738 chr15:77875217-77894713 Sample_01_0088 Tibial nerve tibial-nerve 738 6 618 86 0 144 0 LOC645752,LOC91450
SE_01_008300665 chr15:77875281-77894643 Sample_01_0083 Sigmoid colon sigmoid-colon 665 4 612 84 0 144 0 LOC645752,LOC91450
SE_01_011000720 chr15:77875282-77894118 Sample_01_0110 Aorta thoracic aorta_37y 720 9 592 82 0 144 0 LOC645752,LOC91450
SE_01_007400635 chr15:77875317-77900733 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 635 5 920 152 0 257 83 LOC645752,LOC91450
SE_01_007700431 chr15:77875342-77900708 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 431 4 919 152 0 257 83 LOC645752,LOC91450
SE_01_007800532 chr15:77875406-77900760 Sample_01_0078 Heart left ventricle heart-left-ventricle 532 3 917 152 0 256 83 LOC645752,LOC91450
SE_00_003401010 chr15:77875424-77892786 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 1010 4 538 70 0 137 0 LOC645752,LOC91450
SE_02_037200482 chr15:77875450-77894209 Sample_02_0372 Skeletal muscle RMS008 482 6 591 83 0 143 0 LOC645752,LOC91450
SE_00_000400037 chr15:77875541-77893959 Sample_00_0004 Aorta aorta 37 21 582 80 0 143 0 LOC645752,LOC91450
SE_02_018000258 chr15:77875605-77894261 Sample_02_0180 melanoma CJM 258 4 587 83 0 143 0 LOC645752,LOC91450
SE_02_018100330 chr15:77875662-77894265 Sample_02_0181 melanoma COLO679 330 3 582 83 0 143 0 LOC645752,LOC91450
SE_01_011501346 chr15:77875708-77891803 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 1346 7 486 62 0 128 0 LOC645752,LINGO1
SE_00_002900593 chr15:77875915-77893376 Sample_00_0029 Ovary ovary 593 12 541 73 0 134 0 LOC645752,LOC91450
SE_02_036300330 chr15:77876000-77911161 Sample_02_0363 Haematopoietic and lymphoid tissue 697 330 5 1329 252 0 341 170 LOC645752,LOC91450
SE_02_021500033 chr15:77876004-77911071 Sample_02_0215 Skin NHEK_siGRHL3 33 8 1327 252 0 339 170 LOC645752,LOC91450
SE_02_040500133 chr15:77876014-77894251 Sample_02_0405 Mammary gland ZR-75-30_KO 133 5 573 82 0 136 0 LOC645752,LOC91450
SE_02_086700814 chr15:77876324-77896572 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 814 11 652 94 0 140 0 LOC645752
SE_02_138400707 chr15:77876382-77908814 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 707 9 1205 222 0 299 83 LOC645752,LINGO1
SE_02_141500684 chr15:77876409-77891662 Sample_02_1415 Brain DIPGIV 684 3 465 59 0 110 0 LOC645752,LOC91450
SE_02_114501007 chr15:77876411-77891636 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 1007 14 463 58 0 110 0 LOC645752,LINGO1
SE_02_062200376 chr15:77876615-77899940 Sample_02_0622 Blood EOL1_Naive 376 11 863 140 0 231 83 LOC645752
SE_02_118200359 chr15:77877010-77894944 Sample_02_1182 Brain GBM11 359 7 586 81 0 118 0 LOC645752,LINGO1
SE_01_004700179 chr15:77878345-77904337 Sample_01_0047 Embryo mid-neurogenesis-radial-glial-cells 179 4 985 166 0 238 83 LOC645752,LOC91450
SE_02_025500108 chr15:77878560-77895660 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 108 4 573 78 0 105 0 LOC645752,LOC91450
SE_02_040600156 chr15:77878651-77893652 Sample_02_0406 Mammary gland ZR-75-30_parental 156 5 493 68 0 99 0 LOC645752,LOC91450
SE_02_106200011 chr15:77878807-77894904 Sample_02_1062 Glioma TS543 glioma cells 11 12 533 72 0 104 0 LOC645752
SE_02_096000581 chr15:77878819-77892466 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 581 6 442 55 0 94 0 LOC645752,LINGO1
SE_02_106900465 chr15:77879827-77892516 Sample_02_1069 Bone marrow Bone marrow aspirate 465 3 411 50 0 84 0 LOC645752,LINGO1
SE_02_087100114 chr15:77881370-77904324 Sample_02_0871 Colon HCT116_GLIS2.2-DMSO 114 5 895 154 0 214 83 LOC645752
SE_02_041800302 chr15:77882825-77893595 Sample_02_0418 Embryo H9_Null+EZH2 302 4 358 52 0 61 0 LOC645752,LOC91450
SE_02_125100247 chr15:77883449-77895319 Sample_02_1251 Bone marrow RS4_11_AZD1775 _10h 247 9 420 56 0 70 0 LOC645752
SE_02_125200311 chr15:77884581-77895259 Sample_02_1252 Bone marrow RS4_11_DMSO_10h 311 7 377 51 0 68 0 LOC645752,LOC91450
SE_02_046100302 chr15:77884830-77910846 Sample_02_0461 Blood MV-4-11-B cells 302 6 1069 216 0 265 170 LOC645752,LOC91450
SE_02_099500841 chr15:77884858-77895289 Sample_02_0995 Blood MOLM-13_empty vector 841 5 366 51 0 68 0 LOC645752,LOC91450
SE_02_125000255 chr15:77884916-77895277 Sample_02_1250 Bone marrow RS4_11_AZD1775 _4h 255 5 362 50 0 68 0 LOC645752,LINGO1
SE_02_109800772 chr15:77885077-77895317 Sample_02_1098 Blood THP1_DMSO_noPMA 772 3 348 49 0 68 0 LOC645752,LINGO1
SE_02_099400714 chr15:77885118-77895759 Sample_02_0994 Blood MOLM13_SIK3TQ 714 5 359 52 0 68 0 LOC645752,LINGO1
SE_02_058200731 chr15:77885159-77895561 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 731 4 354 51 0 65 0 LOC645752,LOC91450
SE_02_036000218 chr15:77887309-77895693 Sample_02_0360 Haematopoietic and lymphoid tissue SEM 218 2 287 48 0 56 0 LOC645752,LOC91450
Genomic distribution of SEs associated with LOC645752
Genome Browser

The strength of the tissue affected by the gene

Expression of LOC645752

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)