SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID:
Gene: LOC101929406 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_132000188 chr1:29669401-29719892 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 188 21 1569 37 9 76 0 LOC101929406,LOC101928460
SE_02_077500666 chr1:29676812-29728035 Sample_02_0775 Pancreas EndoC-BH1_SE 666 16 1566 22 7 71 0 LOC101929406
SE_02_127600351 chr1:29681181-29713519 Sample_02_1276 Prostate PC3_GSK126 351 12 1009 12 3 63 0 LOC101929406,PTPRU
SE_02_086900341 chr1:29682357-29713300 Sample_02_0869 Fibroblast VH10_NO_UV 341 12 974 9 3 63 0 LOC101929406,PTPRU
SE_02_132100438 chr1:29682369-29712652 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 438 8 953 9 2 63 0 LOC101929406,LOC101928460
SE_02_113701341 chr1:29686391-29713126 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 1341 7 851 6 2 45 0 LOC101929406,PTPRU
SE_02_111500895 chr1:29687796-29720161 Sample_02_1115 Liver HepG2 895 5 1012 9 5 47 0 LOC101929406
SE_02_044801107 chr1:29687904-29712866 Sample_02_0448 Bone MNNG 1107 7 795 6 2 45 0 LOC101929406,PTPRU
SE_02_126700600 chr1:29688497-29720492 Sample_02_1267 Bone Im-GCT-4072_G34W 600 6 1001 8 5 45 0 LOC101929406,LOC101928460
SE_02_139400344 chr1:29689173-29717590 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 344 6 886 5 4 44 0 LOC101929406,PTPRU
SE_02_087600393 chr1:29706349-29712769 Sample_02_0876 Muscle SMS-CTR_CASZ1b_Ctrl 393 3 191 4 1 16 0 LOC101929406,LOC101928460
SE_02_138800833 chr1:29706568-29714604 Sample_02_1388 Peripheral blood JB6_ALK+ 833 3 234 4 3 16 0 LOC101929406,PTPRU
SE_02_076300749 chr1:29706612-29717505 Sample_02_0763 Podocyte podocyte_DEX 749 4 319 4 4 17 0 LOC101929406,PTPRU
SE_02_158400870 chr1:29706664-29713195 Sample_02_1584 Brain U87 GBM_Mock 870 2 199 4 2 16 0 LOC101929406,LOC101928460
SE_02_126301674 chr1:29706816-29720324 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1674 5 404 6 5 18 0 LOC101929406,LOC101928460
SE_02_126800356 chr1:29706843-29713137 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 356 2 192 3 2 16 0 LOC101929406,LOC101928460
SE_02_064401141 chr1:29706853-29712803 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 1141 6 180 3 1 16 0 LOC101929406
SE_02_063600712 chr1:29706862-29712949 Sample_02_0636 Skin BJ5ta 712 3 184 3 2 16 0 LOC101929406,PTPRU
SE_02_064801464 chr1:29706870-29713335 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1464 3 197 3 2 16 0 LOC101929406,PTPRU
SE_02_065201173 chr1:29706925-29713041 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1173 3 187 3 2 16 0 LOC101929406,PTPRU
SE_02_043700379 chr1:29706955-29713313 Sample_02_0437 Bone 143B 379 7 194 3 2 16 0 LOC101929406
SE_02_065700523 chr1:29706956-29712923 Sample_02_0657 Tracheobronchial epithelial HTBE_H1N1_06h 523 9 180 3 2 16 0 LOC101929406,LOC101928460
SE_02_083100533 chr1:29707158-29713099 Sample_02_0831 Umblical vein HUVECs_TNF0min 533 3 187 3 2 16 0 LOC101929406
SE_02_072700833 chr1:29707571-29712964 Sample_02_0727 Fetal lung IMR90_Etoposide 833 2 173 3 2 16 0 LOC101929406,LOC101928460
SE_02_139000256 chr1:29707612-29720344 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 256 2 391 6 5 18 0 LOC101929406,LOC101928460
SE_02_058500975 chr1:29707666-29713258 Sample_02_0585 Umbilical vein HUVEC 0hour 975 3 182 3 2 16 0 LOC101929406,PTPRU
SE_02_060300412 chr1:29707708-29712448 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 412 2 156 3 1 16 0 LOC101929406,PTPRU
SE_02_057201290 chr1:29707709-29712994 Sample_02_0572 Brain LN229_1_mM_glucose 1290 3 173 3 2 16 0 LOC101929406,LOC101928460
SE_02_072600591 chr1:29707721-29710986 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 591 3 109 1 0 16 0 LOC101929406,LOC101928460
SE_02_104602847 chr1:29728786-29767238 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2847 10 1103 7 3 22 0 LOC101929406
SE_02_124200019 chr1:29790884-29858752 Sample_02_1242 Skin UISO_virus_negative 19 18 2097 8 9 46 0 LOC101929406
SE_02_077502186 chr1:29791665-29807597 Sample_02_0775 Pancreas EndoC-BH1_SE 2186 10 469 1 2 1 0 LOC101929406
SE_02_057300708 chr1:29793169-29808591 Sample_02_0573 Blood Nalm6_1 708 8 465 1 1 3 0 LOC101929406,LOC101928460
SE_02_128300254 chr1:29821493-29837810 Sample_02_1283 Lung NCI-H2107_p8-15 254 8 546 1 1 20 0 LOC101929406
SE_02_088500815 chr1:29824719-29856313 Sample_02_0885 Blood NALM6_2 815 9 1060 6 5 36 0 LOC101929406
SE_02_057300336 chr1:29826627-29856216 Sample_02_0573 Blood Nalm6_1 336 7 940 6 5 35 0 LOC101929406,LOC101928460
SE_02_128300293 chr1:29874200-29880576 Sample_02_1283 Lung NCI-H2107_p8-15 293 3 182 0 1 0 0 LOC101929406
SE_02_104602454 chr1:29883943-29945160 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2454 13 1914 13 9 29 0 LOC101929406
SE_02_124200013 chr1:29896506-29991716 Sample_02_1242 Skin UISO_virus_negative 13 34 2791 17 21 72 0 LOC101929406
SE_02_101700849 chr1:29901390-29985146 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 849 13 2447 15 19 65 0 LOC101929406,PTPRU
SE_02_067800576 chr1:29922641-29930903 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 576 6 282 0 1 1 0 LOC101929406
SE_02_080800666 chr1:29960681-30014409 Sample_02_0808 Ovary RMG1_ARID1A KO 666 28 1525 37 11 26 96 LOC101929406
SE_02_111300831 chr1:29962385-29975519 Sample_02_1113 Bone U2OS 831 7 351 4 3 8 0 LOC101929406
SE_02_093801345 chr1:29962473-29982397 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 1345 5 527 4 3 7 0 LOC101929406,PTPRU
SE_02_093601013 chr1:29969358-29982143 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 1013 3 339 0 1 2 0 LOC101929406
SE_02_104600545 chr1:30029104-30164405 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 545 38 4207 47 26 15 249 LOC101929406
SE_02_124200160 chr1:30081495-30126112 Sample_02_1242 Skin UISO_virus_negative 160 14 1451 6 12 6 0 LOC101929406
SE_02_105801180 chr1:30082998-30128008 Sample_02_1058 Bone A673_SA2 Rescue 1180 18 1460 5 11 6 0 LOC101929406
SE_02_055500708 chr1:30203715-30219847 Sample_02_0555 Other HAP1_WT 708 5 546 5 5 0 0 LOC101929406,MATN1-AS1
SE_02_124200100 chr1:30215343-30252456 Sample_02_1242 Skin UISO_virus_negative 100 14 1189 18 6 27 0 LOC101929406
SE_02_143200206 chr1:30228140-30290529 Sample_02_1432 Bone A673 STAG2 WT 206 31 2094 6 7 53 0 LOC101929406,MATN1-AS1
SE_02_075500742 chr1:30234900-30247887 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 742 3 435 0 1 22 0 LOC101929406,MATN1-AS1
SE_02_105900151 chr1:30239341-30287634 Sample_02_1059 Bone A673_WT 151 16 1645 5 5 50 0 LOC101929406,MATN1-AS1
SE_02_147300153 chr1:30239341-30287634 Sample_02_1473 Bone A-673 153 16 1645 5 5 50 0 LOC101929406,MATN1-AS1
SE_02_105800073 chr1:30239457-30288162 Sample_02_1058 Bone A673_SA2 Rescue 73 22 1660 5 5 50 0 LOC101929406
SE_02_147800236 chr1:30240971-30287559 Sample_02_1478 Bone EW-3 236 8 1595 5 5 50 0 LOC101929406
SE_02_075201332 chr1:30241077-30247142 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 1332 1 208 0 0 22 0 LOC101929406,MATN1-AS1
SE_02_148100061 chr1:30241130-30299352 Sample_02_1481 Bone MIC 61 13 1976 5 6 50 0 LOC101929406
SE_02_147500057 chr1:30241177-30287732 Sample_02_1475 Bone CHLA-25 57 9 1593 5 5 50 0 LOC101929406,MATN1-AS1
SE_02_070100059 chr1:30241661-30266166 Sample_02_0701 Bone David_TC32 59 9 844 1 1 43 0 LOC101929406,MATN1-AS1
SE_02_143300157 chr1:30241732-30287417 Sample_02_1433 Bone A673 STAG2 null 157 25 1572 5 5 50 0 LOC101929406,MATN1-AS1
SE_02_104602284 chr1:30241752-30283986 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2284 14 1455 4 4 43 0 LOC101929406
SE_02_148000172 chr1:30248754-30271712 Sample_02_1480 Bone MHH-ES-1 172 7 793 1 1 21 0 LOC101929406,MATN1-AS1
SE_02_148500725 chr1:30248878-30266209 Sample_02_1485 Bone SK-ES-1 725 9 605 1 1 21 0 LOC101929406,MATN1-AS1
SE_02_106000237 chr1:30248972-30287237 Sample_02_1060 Bone TC71_SA2 KO 237 11 1328 5 5 28 0 LOC101929406,MATN1-AS1
SE_02_128001131 chr1:30249034-30265997 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1131 6 599 1 1 21 0 LOC101929406,MATN1-AS1
SE_02_106100578 chr1:30249375-30286764 Sample_02_1061 Bone TC71_WT 578 13 1303 4 4 27 0 LOC101929406,MATN1-AS1
SE_02_148800579 chr1:30249375-30286764 Sample_02_1488 Bone TC-71 579 14 1303 4 4 27 0 LOC101929406,MATN1-AS1
SE_02_148200400 chr1:30249674-30267372 Sample_02_1482 Bone POE 400 5 619 1 1 21 0 LOC101929406
SE_02_148700117 chr1:30250270-30260570 Sample_02_1487 Bone TC-32 117 5 346 1 1 21 0 LOC101929406,MATN1-AS1
SE_02_148900222 chr1:30250352-30287259 Sample_02_1489 Bone TC-106 222 10 1281 5 5 28 0 LOC101929406,MATN1-AS1
SE_02_148400260 chr1:30251110-30260986 Sample_02_1484 Bone Rh1 260 3 337 1 1 21 0 LOC101929406,MATN1-AS1
SE_02_104602837 chr1:30313243-30342844 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2837 13 1016 16 4 19 0 LOC101929406
Genomic distribution of SEs associated with LOC101929406
Genome Browser

The strength of the tissue affected by the gene

Expression of LOC101929406

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)