SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID:
Gene: LOC101060542 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_04_000600166 chr18:70347887-70386241 Sample_04_0006 Lung A549 GFP control 166 12 1142 59 6 34 0 LOC101927481,LOC101060542
SE_02_152100456 chr18:70354480-70384372 Sample_02_1521 Skin A375 DMSO 456 9 913 42 5 25 0 LOC101060542,LOC101927481
SE_02_082600533 chr18:70354502-70390743 Sample_02_0826 Stomach gastric tumor 533 24 1116 62 5 25 0 LOC101060542,LOC101927481
SE_02_049901134 chr18:70355656-70398027 Sample_02_0499 Fetal lung IMR90 IR Senescence 1134 14 1310 81 6 38 0 LOC101060542,LOC101927481,SOCS6
SE_02_127900478 chr18:70355677-70399187 Sample_02_1279 Bone Mesenchymal stem cells 478 17 1339 84 6 47 0 LOC101060542,LOC101927481
SE_02_048102109 chr18:70355687-70387519 Sample_02_0481 Mammary gland MDA-MB231 2109 8 964 51 5 25 0 LOC101060542,LOC101927481
SE_02_156600555 chr18:70355770-70399140 Sample_02_1566 Dermal Dermal fibroblast 555 13 1334 83 6 47 0 LOC101060542,LOC101927481
SE_02_102900281 chr18:70355801-70386548 Sample_02_1029 Colon HCT116 281 13 937 50 5 25 0 LOC101060542,LOC101927481
SE_02_076200798 chr18:70355865-70405672 Sample_02_0762 Podocyte podocyte_CTL 798 15 1532 101 8 54 0 LOC101060542,LOC101927481
SE_01_011400111 chr18:70355931-70385860 Sample_01_0114 Colon HCT116_encode 111 19 913 49 5 25 0 LOC101060542,LOC101927481
SE_02_066000343 chr18:70356087-70384377 Sample_02_0660 Mammary gland MCF10DCIS 343 11 867 39 5 25 0 LOC101060542,LOC101927481
SE_04_000800121 chr18:70356090-70386293 Sample_04_0008 Lung A549 shRNA control 121 9 925 48 5 25 0 LOC101060542,LOC101927481
SE_02_139800574 chr18:70356143-70391743 Sample_02_1398 Bone U2OS_siNC 574 15 1108 62 5 33 0 LOC101060542,LOC101927481
SE_02_061000507 chr18:70356145-70398271 Sample_02_0610 Liposarcoma MLS 1765-92 507 11 1306 79 6 43 0 LOC101060542,LOC101927481
SE_02_105700520 chr18:70356188-70391029 Sample_02_1057 Esophagus GihTRT 520 6 1076 59 5 33 0 LOC101060542,LOC101927481
SE_04_000900244 chr18:70356268-70387896 Sample_04_0009 Lung A549 244 9 966 51 5 25 0 LOC101060542,LOC101927481
SE_02_066100151 chr18:70356275-70385815 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 151 10 906 47 5 25 0 LOC101060542,LOC101927481
SE_02_045800072 chr18:70356301-70384712 Sample_02_0458 Colon HCT116 DMSO 72 12 874 43 5 25 0 LOC101060542,LOC101927481
SE_02_113600982 chr18:70356315-70374560 Sample_02_1136 Bone U2OS-anaphase/telophase 982 6 492 35 2 0 0 LOC101927481,LOC101060542
SE_04_000700187 chr18:70356361-70382647 Sample_04_0007 Lung A549 FOXA2 shRNA2 187 8 800 37 4 25 0 LOC101060542,LOC101927481
SE_02_105600645 chr18:70356402-70385877 Sample_02_1056 Esophagus ChTRT 645 4 898 47 5 25 0 LOC101060542,LOC101927481
SE_02_105500119 chr18:70356402-70385966 Sample_02_1055 Esophagus KYAE1 119 5 902 47 5 25 0 LOC101060542,LOC101927481
SE_02_060500969 chr18:70356451-70398687 Sample_02_0605 Skin Skin Fibroblast_DMSO 969 10 1303 78 6 47 0 LOC101060542,LOC101927481
SE_02_057100091 chr18:70356455-70387303 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 91 9 938 48 5 25 0 LOC101060542,LOC101927481
SE_02_088400409 chr18:70356462-70386217 Sample_02_0884 Colon LoVo 409 10 909 47 5 25 0 LOC101060542,LOC101927481
SE_04_000300232 chr18:70356478-70378867 Sample_04_0003 Lung A549 TEAD4 shRNA TGFb 232 6 656 37 4 0 0 LOC101927481,LOC101060542
SE_04_000400125 chr18:70356495-70390774 Sample_04_0004 Lung A549 TEAD2 shRNA TGFb 125 10 1061 58 5 25 0 LOC101060542,LOC101927481
SE_02_050000639 chr18:70356617-70398399 Sample_02_0500 Fetal lung IMR90_#2 639 20 1293 78 6 46 0 LOC101060542,LOC101927481,SOCS6
SE_02_138200280 chr18:70356658-70387958 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 280 14 960 51 5 25 0 LOC101060542,LOC101927481
SE_02_047500607 chr18:70356674-70378540 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 607 6 631 37 4 0 0 LOC101927481,LOC101060542
SE_02_060601185 chr18:70356682-70398819 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 1185 10 1300 80 6 47 0 LOC101060542,LOC101927481
SE_02_138100155 chr18:70356687-70388247 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 155 15 966 51 5 25 0 LOC101060542,LOC101927481
SE_02_124700119 chr18:70356695-70382178 Sample_02_1247 Colon HCT116_IFN-beta_1h 119 7 771 37 4 24 0 LOC101060542,LOC101927481
SE_02_057000097 chr18:70356745-70384291 Sample_02_0570 Brain LN229_10_mM_glucose 97 10 847 38 5 25 0 LOC101060542,LOC101927481
SE_02_157101014 chr18:70356774-70398308 Sample_02_1571 Fibroblast Fibroblast cells 1014 8 1285 78 6 44 0 LOC101060542,LOC101927481
SE_02_056100174 chr18:70356813-70378793 Sample_02_0561 Lung A549_1 174 6 642 37 4 0 0 LOC101927481,LOC101060542,SOCS6,RTTN
SE_02_056200187 chr18:70356829-70378581 Sample_02_0562 Lung A549_Dex-treated 187 8 628 37 4 0 0 LOC101927481,LOC101060542
SE_02_150600422 chr18:70356868-70398901 Sample_02_1506 Brain SHEP with tetracycline inducible MYC_DOX_6HR 422 10 1297 80 6 47 0 LOC101060542,LOC101927481
SE_02_057200123 chr18:70356876-70384228 Sample_02_0572 Brain LN229_1_mM_glucose 123 9 840 37 5 25 0 LOC101060542,LOC101927481
SE_02_152300208 chr18:70356926-70382557 Sample_02_1523 Lung A549 DMSO 208 8 774 37 4 25 0 LOC101060542,LOC101927481
SE_02_070500418 chr18:70356932-70384747 Sample_02_0705 Pancreas AsPC1 WT 418 5 858 43 5 25 0 LOC101060542,LOC101927481
SE_02_136500938 chr18:70356939-70385781 Sample_02_1365 Pancreas AsPC1-untreated 938 9 885 47 5 25 0 LOC101060542,LOC101927481
SE_02_060700059 chr18:70356957-70382625 Sample_02_0607 Colon HCT116 TP53-/-_Nutlin-3A 59 18 780 37 4 25 0 LOC101060542,LOC101927481
SE_02_072400540 chr18:70357223-70383332 Sample_02_0724 Pancreatic duct AsPC1_GFP_DOX 540 9 804 37 4 25 0 LOC101060542,LOC101927481
SE_02_086701069 chr18:70357434-70398036 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 1069 21 1270 77 6 38 0 LOC101060542,LOC101927481
SE_02_047701272 chr18:70357803-70382806 Sample_02_0477 Colon intestinal epithelial organoids_139a 1272 11 772 35 4 25 0 LOC101060542,LOC101927481
SE_02_047600571 chr18:70365766-70381995 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 571 15 514 4 3 24 0 LOC101060542,LOC101927481
SE_02_072300125 chr18:70366011-70389364 Sample_02_0723 Pancreas MIAPaca2 WT 125 1 758 24 4 25 0 LOC101060542,LOC101927481
SE_02_075700428 chr18:70366441-70382660 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 428 4 528 4 3 25 0 LOC101060542,LOC101927481
SE_04_001000533 chr18:70369663-70379094 Sample_04_0010 Lung A549 TGFb 533 1 313 3 3 0 0 LOC101927481,LOC101060542
SE_02_045300700 chr18:70370409-70386436 Sample_02_0453 Neuroblastoma SJNB3 700 1 551 13 3 25 0 LOC101060542,LOC101927481
SE_02_085600411 chr18:70370953-70386058 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 411 3 527 13 3 25 0 LOC101060542,LOC101927481
SE_02_094200115 chr18:70371179-70384236 Sample_02_0942 Brain LN229 115 4 469 3 3 25 0 LOC101060542,LOC101927481
SE_02_136800158 chr18:70371255-70387504 Sample_02_1368 Pancreas MIA PaCa-2-untreated 158 10 559 14 3 25 0 LOC101060542,LOC101927481
SE_02_077600359 chr18:70371490-70382701 Sample_02_0776 Pancreas EndoC-BH1 359 1 408 3 2 25 0 LOC101060542,LOC101927481
SE_02_088601627 chr18:70372054-70398422 Sample_02_0886 Skin foreskin_ p63KLF4 1627 6 882 43 4 46 0 LOC101060542,LOC101927481
SE_02_075400603 chr18:70372573-70382326 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 603 3 351 2 2 25 0 LOC101060542,LOC101927481
SE_02_125500520 chr18:70372725-70383285 Sample_02_1255 Bladder Bladder tumor Luminal2 520 5 383 2 2 25 0 LOC101060542,LOC101927481
SE_02_138300200 chr18:70401985-70465093 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 200 21 1877 119 2 68 0 LOC101060542
SE_02_103602280 chr18:70403947-70434729 Sample_02_1036 Mammary gland HCC70_XY018 2280 13 910 50 0 20 0 LOC101060542
SE_02_072300121 chr18:70410816-70428647 Sample_02_0723 Pancreas MIAPaca2 WT 121 1 487 26 0 16 0 LOC101060542
SE_02_138200274 chr18:70410909-70464897 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 274 25 1600 96 1 63 0 LOC101060542
SE_02_138100211 chr18:70411337-70465091 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 211 21 1591 96 1 64 0 LOC101060542
SE_04_001000373 chr18:70411623-70434725 Sample_04_0010 Lung A549 TGFb 373 2 671 35 0 16 0 LOC101060542
SE_04_000900434 chr18:70411676-70434861 Sample_04_0009 Lung A549 434 5 670 35 0 16 0 LOC101060542
SE_04_000600373 chr18:70412298-70464977 Sample_04_0006 Lung A549 GFP control 373 7 1564 96 1 64 0 LOC101060542
SE_02_136800166 chr18:70412328-70433943 Sample_02_1368 Pancreas MIA PaCa-2-untreated 166 10 624 35 0 16 0 LOC101060542
SE_04_000700231 chr18:70412423-70434717 Sample_04_0007 Lung A549 FOXA2 shRNA2 231 7 650 35 0 16 0 LOC101060542
SE_02_103502194 chr18:70412480-70433901 Sample_02_1035 Mammary gland HCC70_Vehicle 2194 10 622 35 0 16 0 LOC101060542
SE_02_082601363 chr18:70413215-70433892 Sample_02_0826 Stomach gastric tumor 1363 21 601 35 0 16 0 LOC101060542
SE_02_066000822 chr18:70415055-70434593 Sample_02_0660 Mammary gland MCF10DCIS 822 8 581 34 0 16 0 LOC101060542
SE_02_066100328 chr18:70415401-70433864 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 328 10 547 34 0 16 0 LOC101060542
SE_02_045800254 chr18:70415466-70433311 Sample_02_0458 Colon HCT116 DMSO 254 6 526 34 0 16 0 LOC101060542
SE_01_011400323 chr18:70416001-70433979 Sample_01_0114 Colon HCT116_encode 323 9 539 34 0 16 0 LOC101060542
SE_02_045300804 chr18:70417097-70465227 Sample_02_0453 Neuroblastoma SJNB3 804 11 1442 93 1 64 0 LOC101060542
SE_02_135600438 chr18:70417750-70433912 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 438 4 484 32 0 14 0 LOC101060542
SE_02_135501034 chr18:70417858-70431952 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 1034 3 425 30 0 14 0 LOC101060542
SE_02_047401050 chr18:70417930-70433898 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1050 4 480 32 0 13 0 LOC101060542
SE_02_127901652 chr18:70418135-70434827 Sample_02_1279 Bone Mesenchymal stem cells 1652 4 497 32 0 13 0 LOC101060542
SE_02_049901639 chr18:70418234-70434016 Sample_02_0499 Fetal lung IMR90 IR Senescence 1639 9 472 32 0 6 0 LOC101060542
SE_02_076201841 chr18:70418430-70435623 Sample_02_0762 Podocyte podocyte_CTL 1841 4 508 32 0 6 0 LOC101060542
SE_02_057200883 chr18:70418715-70434049 Sample_02_0572 Brain LN229_1_mM_glucose 883 6 456 31 0 6 0 LOC101060542
SE_04_000800316 chr18:70418743-70434731 Sample_04_0008 Lung A549 shRNA control 316 6 478 31 0 6 0 LOC101060542
SE_02_101702003 chr18:70418851-70454834 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 2003 9 1109 75 0 35 0 LOC101060542
SE_04_000300326 chr18:70418912-70434583 Sample_04_0003 Lung A549 TEAD4 shRNA TGFb 326 7 470 31 0 6 0 LOC101060542
SE_02_057000632 chr18:70419386-70433960 Sample_02_0570 Brain LN229_10_mM_glucose 632 5 433 29 0 6 0 LOC101060542
SE_02_050700434 chr18:70421719-70433784 Sample_02_0507 Esophagus TE7_1 434 8 365 25 0 6 0 LOC101060542
SE_02_143201234 chr18:70457216-70522712 Sample_02_1432 Bone A673 STAG2 WT 1234 23 1805 125 7 114 76 LOC101060542
SE_02_105901122 chr18:70488411-70507383 Sample_02_1059 Bone A673_WT 1122 7 505 33 4 57 0 LOC101060542
SE_02_068700552 chr18:70493485-70525417 Sample_02_0687 Lung NCI-H146_no infection 552 8 852 30 3 108 76 LOC101060542
Genomic distribution of SEs associated with LOC101060542
Genome Browser

The strength of the tissue affected by the gene

Expression of LOC101060542

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)