Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000164385 |
| Gene: | LINC01600 | Gene type: | lncRNA |
| Strand: | - | External links: |
|
| Genomic region: | chr6:2621913-2634619 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_086200179 | chr6:2428479-2452314 |
Sample_02_0862 | Malignant rhaboid tumor | TTC1240_SMARCB1 FL | 179 | 2 | 669 | 73 | 6 | 161 | 12 | LINC01600 |
| SE_02_086400195 | chr6:2428897-2452075 |
Sample_02_0864 | Malignant rhaboid tumor | TTC1240_SMARCB1_K364del | 195 | 2 | 650 | 73 | 6 | 160 | 0 | LINC01600 |
| SE_02_086500203 | chr6:2428914-2451997 |
Sample_02_0865 | Malignant rhaboid tumor | TTC1240_SMARCB1_R377H | 203 | 4 | 648 | 73 | 6 | 160 | 0 | LINC01600 |
| SE_02_086300159 | chr6:2428985-2452415 |
Sample_02_0863 | Malignant rhaboid tumor | TTC1240_empty | 159 | 1 | 662 | 75 | 6 | 160 | 23 | LINC01600 |
| SE_02_127300750 | chr6:2474889-2519072 |
Sample_02_1273 | Cervix | HeLa | 750 | 9 | 1439 | 84 | 3 | 145 | 413 | LINC01600 |
| SE_02_125400854 | chr6:2500188-2543572 |
Sample_02_1254 | Bladder | Bladder tumor Basal1 | 854 | 10 | 1493 | 93 | 2 | 98 | 0 | LINC01600 |
| SE_02_155100563 | chr6:2501852-2553489 |
Sample_02_1551 | Gastrointestinal Stromal | MaMel | 563 | 12 | 1783 | 89 | 1 | 127 | 0 | LINC01600 |
| SE_02_148100542 | chr6:2506183-2547868 |
Sample_02_1481 | Bone | MIC | 542 | 12 | 1467 | 75 | 1 | 106 | 0 | LINC01600 |
| SE_02_075300545 | chr6:2575956-2591493 |
Sample_02_0753 | Embryo | ES-derived progenitors_FG type | 545 | 5 | 416 | 36 | 1 | 24 | 0 | LINC01600 |
| SE_02_075600767 | chr6:2576063-2591373 |
Sample_02_0756 | Embryo | ES-derived progenitors_FG FOXA2 -/- | 767 | 3 | 411 | 36 | 1 | 24 | 0 | LINC01600 |
| SE_01_009300599 | chr6:2611398-2635818 |
Sample_01_0093 | Aorta | ascending aorta | 599 | 5 | 749 | 79 | 3 | 109 | 472 | LINC01600 |
| SE_02_053300847 | chr6:2611618-2640785 |
Sample_02_0533 | Blood vessel | Circle of Willis_54y | 847 | 11 | 886 | 94 | 3 | 119 | 472 | LINC01600 |
| SE_02_053400665 | chr6:2615323-2640288 |
Sample_02_0534 | Blood vessel | Circle of Willis_60y | 665 | 11 | 772 | 82 | 3 | 114 | 472 | LINC01600 |
| SE_02_104602258 | chr6:2616437-2702237 |
Sample_02_1046 | Peripheral blood | CD4+ cells_CTCL1145 | 2258 | 19 | 2588 | 232 | 7 | 341 | 1487 | LINC01600,MYLK4 |
| SE_02_127300194 | chr6:2620516-2636048 |
Sample_02_1273 | Cervix | HeLa | 194 | 2 | 492 | 52 | 3 | 89 | 472 | LINC01600 |
| SE_02_058800062 | chr6:2620574-2637270 |
Sample_02_0588 | Cervix | HeLa Kyoto_untreated | 62 | 12 | 533 | 56 | 3 | 88 | 472 | LINC01600 |
| SE_02_059000531 | chr6:2620686-2633034 |
Sample_02_0590 | Cervix | HeLa Kyoto_Luci PWWP2A siRNA | 531 | 14 | 392 | 41 | 3 | 82 | 248 | LINC01600 |
| SE_02_058900178 | chr6:2621239-2634510 |
Sample_02_0589 | Cervix | HeLa Kyoto_Luci siRNA | 178 | 7 | 429 | 45 | 3 | 83 | 375 | LINC01600 |
| SE_02_071201177 | chr6:2621381-2635341 |
Sample_02_0712 | Pancreas | BxPC3_sgNEG | 1177 | 6 | 449 | 49 | 3 | 85 | 472 | LINC01600 |
| SE_01_011000528 | chr6:2621715-2642005 |
Sample_01_0110 | Aorta | thoracic aorta_37y | 528 | 8 | 640 | 66 | 3 | 96 | 472 | LINC01600 |
| SE_02_142701005 | chr6:2622222-2635287 |
Sample_02_1427 | Shoulder | fibroblast_343 | 1005 | 4 | 432 | 45 | 3 | 83 | 472 | LINC01600 |
| SE_02_081901048 | chr6:2622798-2635349 |
Sample_02_0819 | Ovary | Mucinous ovarian cancer | 1048 | 3 | 417 | 43 | 3 | 81 | 450 | LINC01600 |
| SE_02_142100101 | chr6:2623111-2634554 |
Sample_02_1421 | Brain | NHA | 101 | 2 | 386 | 39 | 3 | 69 | 319 | LINC01600 |
| SE_02_126301074 | chr6:2625366-2635447 |
Sample_02_1263 | Bone | Im-GCT-4072_G34W unedited | 1074 | 2 | 320 | 29 | 1 | 62 | 224 | LINC01600 |
| SE_02_126700606 | chr6:2625411-2635436 |
Sample_02_1267 | Bone | Im-GCT-4072_G34W | 606 | 2 | 318 | 29 | 1 | 62 | 224 | LINC01600 |
| SE_02_057000394 | chr6:2629498-2660450 |
Sample_02_0570 | Brain | LN229_10_mM_glucose | 394 | 12 | 869 | 71 | 0 | 62 | 224 | LINC01600 |
| SE_02_153900400 | chr6:2629721-2689212 |
Sample_02_1539 | Nasopharyngeal | C666-1 | 400 | 23 | 1801 | 172 | 4 | 222 | 1179 | LINC01600,MYLK4 |
| SE_02_125400390 | chr6:2656842-2689763 |
Sample_02_1254 | Bladder | Bladder tumor Basal1 | 390 | 11 | 1041 | 107 | 4 | 178 | 955 | MYLK4,LINC01600 |
| SE_02_048101821 | chr6:2677928-2690125 |
Sample_02_0481 | Mammary gland | MDA-MB231 | 1821 | 7 | 367 | 44 | 3 | 90 | 367 | MYLK4,LINC01600 |
| SE_02_099100903 | chr6:2678819-2694153 |
Sample_02_0991 | Breast cancer cell line lung metastatic variant | MDA-MB-231 LM2 | 903 | 5 | 474 | 46 | 3 | 102 | 360 | MYLK4,LINC01600 |
| SE_02_057201204 | chr6:2682931-2690169 |
Sample_02_0572 | Brain | LN229_1_mM_glucose | 1204 | 7 | 241 | 26 | 1 | 27 | 190 | MYLK4,LINC01600 |
Genomic distribution of SEs associated with LINC01600