SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000229891
Gene: LINC01315 Gene type: lncRNA
Strand: - External links:
Genomic region: chr22:42364390-42369284 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104700069 chr22:42261724-42398369 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 69 56 3764 452 12 887 2096 NFAM1,OGFRP1,LINC01315,TCF20
SE_02_108200077 chr22:42266053-42413599 Sample_02_1082 Retina retina 77 39 4162 546 14 901 2351 NFAM1,OGFRP1,LINC01315
SE_02_047100054 chr22:42273489-42446303 Sample_02_0471 Brain Kelly DMSO 54 60 4874 604 15 896 2284 NFAM1,OGFRP1,LINC01315
SE_02_110100069 chr22:42273807-42446397 Sample_02_1101 Brain KELLY 69 85 4869 603 15 896 2273 NFAM1,OGFRP1,LINC01315
SE_02_054400052 chr22:42273826-42473490 Sample_02_0544 Brain Kelly_ResVeh 52 61 5596 687 15 936 2271 NFAM1,OGFRP1,LINC01315,SERHL,RRP7A
SE_02_101700773 chr22:42273892-42366019 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 773 21 2510 302 10 665 323 OGFRP1,LINC01315
SE_02_097000294 chr22:42273895-42366942 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 294 20 2522 303 10 669 323 OGFRP1,LINC01315
SE_02_123500012 chr22:42273968-42445082 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 12 55 4834 602 15 888 2247 NFAM1,OGFRP1,LINC01315
SE_02_104600022 chr22:42274002-42472998 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 22 94 5581 686 15 928 2242 NFAM1,OGFRP1,LINC01315,SERHL,RRP7A
SE_02_054200075 chr22:42274003-42446446 Sample_02_0542 Brain Kelly_ResJQ1 75 72 4865 603 15 888 2242 NFAM1,OGFRP1,LINC01315
SE_02_110500068 chr22:42274210-42445852 Sample_02_1105 Brain NBL-S 68 79 4839 602 14 886 2209 NFAM1,OGFRP1,LINC01315
SE_02_055300011 chr22:42274219-42446028 Sample_02_0553 Other HSSY2 shCt 11 77 4842 602 14 886 2209 NFAM1,OGFRP1,LINC01315
SE_02_104800091 chr22:42282253-42359825 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 91 37 2128 260 6 585 0 OGFRP1,LINC01315
SE_02_110200120 chr22:42282412-42445065 Sample_02_1102 Brain LA-N-5 120 60 4636 574 12 856 2056 NFAM1,LINC01315,OGFRP1
SE_02_096200096 chr22:42282428-42367015 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 96 32 2323 275 7 632 123 LINC01315,OGFRP1
SE_02_110000105 chr22:42283072-42463238 Sample_02_1100 Brain COG-N-415 105 73 5121 614 12 872 2056 NFAM1,LINC01315,OGFRP1,SERHL
SE_02_110600124 chr22:42283139-42445079 Sample_02_1106 Brain NGP 124 62 4618 569 12 831 2056 NFAM1,LINC01315,OGFRP1
SE_02_147500014 chr22:42288811-42445863 Sample_02_1475 Bone CHLA-25 14 42 4494 548 10 741 2056 NFAM1,LINC01315,OGFRP1
SE_02_110800240 chr22:42289592-42400198 Sample_02_1108 Brain SK-N-BE_2_-C 240 48 3087 366 6 659 1689 NFAM1,LINC01315,OGFRP1
SE_02_144300075 chr22:42292624-42400152 Sample_02_1443 Lung H69M 75 20 3011 360 6 629 1689 NFAM1,LINC01315,OGFRP1
SE_02_144200019 chr22:42293425-42400868 Sample_02_1442 Lung H69 19 29 3011 360 5 628 1689 NFAM1,LINC01315,OGFRP1
SE_02_077500063 chr22:42293508-42446962 Sample_02_0775 Pancreas EndoC-BH1_SE 63 58 4398 535 9 709 2056 NFAM1,LINC01315,OGFRP1
SE_02_069300136 chr22:42293688-42400349 Sample_02_0693 Lung NCI-H69_no infection 136 35 2989 355 5 628 1689 NFAM1,LINC01315,OGFRP1
SE_02_097400147 chr22:42296838-42365630 Sample_02_0974 Brain H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells 147 14 1892 219 4 440 123 LINC01315,OGFRP1
SE_02_102900453 chr22:42299187-42444838 Sample_02_1029 Colon HCT116 453 42 4176 515 9 669 2056 NFAM1,LINC01315,OGFRP1
SE_02_074300040 chr22:42309355-42381885 Sample_02_0743 Embryo ES derived mesoderm_day2 40 19 1958 224 4 491 681 NFAM1,LINC01315,OGFRP1
SE_02_121300872 chr22:42310206-42347984 Sample_02_1213 Brain GBM31 872 12 979 104 2 319 0 OGFRP1,LINC01315
SE_02_068701042 chr22:42312039-42344399 Sample_02_0687 Lung NCI-H146_no infection 1042 13 837 89 1 250 0 OGFRP1,LINC01315
SE_02_128600063 chr22:42313623-42400636 Sample_02_1286 Lung NCI-H378_p8-15 63 28 2411 289 4 522 1689 NFAM1,LINC01315,OGFRP1
SE_02_120300952 chr22:42314312-42347964 Sample_02_1203 Brain NB1 952 12 867 91 2 304 0 OGFRP1,LINC01315
SE_02_087100229 chr22:42316428-42330210 Sample_02_0871 Colon HCT116_GLIS2.2-DMSO 229 3 356 37 0 72 0 OGFRP1,LINC01315
SE_02_100900340 chr22:42325042-42344632 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 340 8 526 47 1 176 0 LINC01315
SE_02_150000220 chr22:42328554-42413640 Sample_02_1500 Brain KELLY_untreat 220 18 2453 328 6 447 1944 NFAM1,LINC01315
SE_02_119600550 chr22:42330808-42398234 Sample_02_1196 Brain GBM32 550 23 1872 221 4 415 1689 NFAM1,LINC01315
SE_02_046200010 chr22:42335635-42445094 Sample_02_0462 Lung NCI-H2171 cells 10 52 3165 393 7 477 2056 NFAM1,LINC01315
SE_02_110400639 chr22:42335794-42413503 Sample_02_1104 Brain NB-69 639 21 2234 304 5 406 1944 NFAM1,LINC01315
SE_02_096900556 chr22:42336067-42367053 Sample_02_0969 Brain H3.3K27M_PL637 556 13 843 94 2 250 123 LINC01315
SE_02_106300173 chr22:42340110-42399704 Sample_02_1063 Brain CLB-GA-control 173 18 1666 206 3 346 1689 NFAM1,LINC01315
SE_02_155300820 chr22:42340192-42376411 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 820 11 970 109 2 270 346 LINC01315
SE_02_106400235 chr22:42340495-42399698 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 235 12 1659 205 3 344 1689 NFAM1,LINC01315
SE_02_117600331 chr22:42340784-42389952 Sample_02_1176 Brain GBM04 331 11 1368 163 3 334 1606 NFAM1,LINC01315
SE_02_110900384 chr22:42340963-42400127 Sample_02_1109 Brain SK-N-FI 384 31 1668 209 3 350 1689 NFAM1,LINC01315
SE_02_147800288 chr22:42341015-42380483 Sample_02_1478 Bone EW-3 288 14 1070 124 3 297 379 NFAM1,LINC01315
SE_02_148600312 chr22:42341056-42376814 Sample_02_1486 Bone SK-N-MC 312 10 963 107 2 258 346 LINC01315
SE_02_148300942 chr22:42341060-42376783 Sample_02_1483 Bone RD-ES 942 9 963 107 2 258 346 LINC01315
SE_02_148200753 chr22:42341085-42376894 Sample_02_1482 Bone POE 753 9 963 107 2 261 346 LINC01315
SE_02_143301796 chr22:42341109-42377016 Sample_02_1433 Bone A673 STAG2 null 1796 12 968 107 2 261 346 LINC01315
SE_02_148500901 chr22:42341169-42366560 Sample_02_1485 Bone SK-ES-1 901 8 705 86 2 197 123 LINC01315
SE_02_147400304 chr22:42342116-42375668 Sample_02_1474 Bone CHLA-10 304 5 900 102 2 228 346 LINC01315
SE_02_064200653 chr22:42342523-42379710 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 653 12 1004 117 2 245 346 LINC01315
SE_02_106100354 chr22:42342540-42376973 Sample_02_1061 Bone TC71_WT 354 12 928 106 2 235 346 LINC01315
SE_02_148800354 chr22:42342540-42376973 Sample_02_1488 Bone TC-71 354 12 928 106 2 235 346 LINC01315
SE_02_148900127 chr22:42342801-42376460 Sample_02_1489 Bone TC-106 127 10 901 105 2 228 346 LINC01315
SE_02_096000465 chr22:42342808-42365850 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 465 5 641 83 2 165 123 LINC01315
SE_02_064300713 chr22:42342838-42386694 Sample_02_0643 Mammary gland MDA-MB-436 713 11 1218 146 3 275 1493 NFAM1,LINC01315
SE_02_103600715 chr22:42343127-42344885 Sample_02_1036 Mammary gland HCC70_XY018 715 1 26 5 0 49 0 LINC01315
SE_02_103500798 chr22:42343172-42345326 Sample_02_1035 Mammary gland HCC70_Vehicle 798 1 33 5 0 60 0 LINC01315
SE_02_147700672 chr22:42344336-42375613 Sample_02_1477 Bone EW-22 672 8 854 97 2 185 346 LINC01315
SE_02_101300644 chr22:42365411-42397332 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 644 7 878 105 1 143 1483 NFAM1,LINC01315
SE_02_129200441 chr22:42379664-42400288 Sample_02_1292 Lung JHU-LX110-SCLC PDX 441 5 625 90 1 70 1343 NFAM1,LINC01315
Genomic distribution of SEs associated with LINC01315
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC01315

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)