Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000230390 |
| Gene: | LINC01048 | Gene type: | lncRNA |
| Strand: | - | External links: |
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| Genomic region: | chr13:37481467-37484769 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_127901172 | chr13:37284848-37319560 |
Sample_02_1279 | Bone | Mesenchymal stem cells | 1172 | 8 | 959 | 78 | 3 | 57 | 0 | LINC01048 |
| SE_02_055400285 | chr13:37332436-37383463 |
Sample_02_0554 | Other | Aska shSSX | 285 | 22 | 1440 | 98 | 10 | 57 | 0 | LINC01048 |
| SE_02_157100910 | chr13:37360265-37387644 |
Sample_02_1571 | Fibroblast | Fibroblast cells | 910 | 6 | 794 | 32 | 10 | 37 | 0 | LINC01048 |
| SE_02_157100135 | chr13:37402809-37461547 |
Sample_02_1571 | Fibroblast | Fibroblast cells | 135 | 9 | 1790 | 41 | 12 | 40 | 0 | LINC01048 |
| SE_02_131000342 | chr13:37402952-37460944 |
Sample_02_1310 | Bone marrow | ASMSCs | 342 | 9 | 1758 | 39 | 11 | 40 | 0 | LINC01048 |
| SE_02_131100207 | chr13:37403019-37460767 |
Sample_02_1311 | Bone marrow | HDMSCs | 207 | 9 | 1747 | 39 | 11 | 40 | 0 | LINC01048 |
| SE_02_127901524 | chr13:37403050-37460987 |
Sample_02_1279 | Bone | Mesenchymal stem cells | 1524 | 10 | 1757 | 39 | 11 | 40 | 0 | LINC01048 |
| SE_02_137800660 | chr13:37403196-37458191 |
Sample_02_1378 | Pancreas | Pancreatic_tumor_associated_fibroblasts_CAF08_untreated | 660 | 17 | 1673 | 37 | 11 | 40 | 0 | LINC01048 |
| SE_02_137900966 | chr13:37475047-37495787 |
Sample_02_1379 | Pancreas | Pancreatic_tumor_associated_fibroblasts_PS1_untreated | 966 | 9 | 642 | 40 | 5 | 32 | 0 | LINC01048,LINC00547 |
| SE_02_157100114 | chr13:37475244-37503573 |
Sample_02_1571 | Fibroblast | Fibroblast cells | 114 | 4 | 828 | 43 | 6 | 38 | 0 | LINC01048,LINC00547 |
| SE_02_127901249 | chr13:37475273-37496122 |
Sample_02_1279 | Bone | Mesenchymal stem cells | 1249 | 4 | 644 | 38 | 5 | 32 | 0 | LINC01048,LINC00547 |
| SE_02_084000962 | chr13:37475311-37495886 |
Sample_02_0840 | Embryo | hNPCs_R1159Q/+ | 962 | 9 | 637 | 38 | 5 | 32 | 0 | LINC01048,LINC00547,TRPC4 |
| SE_02_083900677 | chr13:37476598-37495383 |
Sample_02_0839 | Embryo | hNPCs_K755R/+ | 677 | 7 | 578 | 30 | 4 | 29 | 0 | LINC01048,LINC00547,TRPC4 |
| SE_02_131000323 | chr13:37476713-37496149 |
Sample_02_1310 | Bone marrow | ASMSCs | 323 | 4 | 604 | 34 | 4 | 29 | 0 | LINC01048,LINC00547 |
| SE_02_141001256 | chr13:37476717-37496333 |
Sample_02_1410 | Brain | GSC6 | 1256 | 3 | 610 | 35 | 4 | 29 | 0 | LINC01048,LINC00547 |
| SE_02_131100188 | chr13:37476784-37496046 |
Sample_02_1311 | Bone marrow | HDMSCs | 188 | 2 | 602 | 34 | 4 | 29 | 0 | LINC01048,LINC00547 |
| SE_02_063800863 | chr13:37476907-37510344 |
Sample_02_0638 | Fibroblast | HGPS fibroblast_LMNA_AG11498 | 863 | 18 | 985 | 38 | 5 | 37 | 0 | LINC01048,LINC00547 |
| SE_02_055100076 | chr13:37477491-37511631 |
Sample_02_0551 | Other | Aska-BAF47KO1 shSSX | 76 | 8 | 988 | 37 | 5 | 37 | 0 | LINC01048,LINC00547 |
| SE_02_055400231 | chr13:37479132-37512009 |
Sample_02_0554 | Other | Aska shSSX | 231 | 13 | 945 | 36 | 5 | 37 | 0 | LINC01048,LINC00547 |
| SE_02_055000094 | chr13:37479279-37511636 |
Sample_02_0550 | Other | Aska-BAF47KO1 shCt | 94 | 6 | 930 | 34 | 5 | 37 | 0 | LINC01048,LINC00547 |
| SE_02_054900098 | chr13:37480939-37506067 |
Sample_02_0549 | Other | Aska shCt | 98 | 12 | 736 | 33 | 5 | 29 | 0 | LINC01048,LINC00547 |
| SE_02_126401301 | chr13:37481040-37496155 |
Sample_02_1264 | Bone | Im-GCT-4072_G34W KO | 1301 | 5 | 477 | 28 | 4 | 23 | 0 | LINC01048,LINC00547 |
Genomic distribution of SEs associated with LINC01048