Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000106689 |
| Gene: | LHX2 | Gene type: | protein_coding |
| Strand: | + | External links: |
|
| Genomic region: | chr9:124001670-124033301 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_104601031 | chr9:123970236-124079886 |
Sample_02_1046 | Peripheral blood | CD4+ cells_CTCL1145 | 1031 | 25 | 3141 | 56 | 9 | 690 | 1173 | LHX2,DENND1A |
| SE_02_124200127 | chr9:123997509-124020703 |
Sample_02_1242 | Skin | UISO_virus_negative | 127 | 8 | 602 | 3 | 1 | 426 | 928 | LHX2 |
| SE_02_114200076 | chr9:123998062-124046112 |
Sample_02_1142 | Peripheral nerve | MPNST642_PRC2 mutant | 76 | 19 | 1292 | 10 | 3 | 575 | 1173 | LHX2 |
| SE_02_027500208 | chr9:123998765-124019527 |
Sample_02_0275 | Retina | FW14 | 208 | 3 | 529 | 3 | 1 | 425 | 928 | LHX2 |
| SE_02_027700118 | chr9:123998789-124020800 |
Sample_02_0277 | Retina | FW18 | 118 | 3 | 572 | 3 | 1 | 426 | 928 | LHX2 |
| SE_02_027800163 | chr9:123998896-124019526 |
Sample_02_0278 | Retina | FW24 | 163 | 3 | 522 | 3 | 1 | 425 | 928 | LHX2 |
| SE_02_063500186 | chr9:123998924-124019084 |
Sample_02_0635 | Synovial sarcoma | HSSYII_Untreated | 186 | 6 | 508 | 3 | 1 | 424 | 928 | LHX2 |
| SE_02_128600044 | chr9:123999010-124019297 |
Sample_02_1286 | Lung | NCI-H378_p8-15 | 44 | 10 | 511 | 3 | 1 | 424 | 928 | LHX2 |
| SE_02_097800172 | chr9:123999023-124019220 |
Sample_02_0978 | Brain | 2168_IDH1 | 172 | 7 | 508 | 3 | 1 | 424 | 928 | LHX2 |
| SE_02_117700103 | chr9:123999033-124023267 |
Sample_02_1177 | Brain | GBM05 | 103 | 7 | 620 | 3 | 3 | 443 | 1033 | LHX2 |
| SE_02_096900575 | chr9:123999071-124019278 |
Sample_02_0969 | Brain | H3.3K27M_PL637 | 575 | 4 | 510 | 3 | 1 | 424 | 928 | LHX2 |
| SE_02_096300328 | chr9:123999071-124023730 |
Sample_02_0963 | Brain | H3.3K27M_Tumor-derived cell-line_G477p6_cells | 328 | 5 | 628 | 3 | 3 | 444 | 1033 | LHX2 |
| SE_00_004800088 | chr9:123999073-124018854 |
Sample_00_0048 | Embryo | neuronal stem cell originated from H1 | 88 | 13 | 498 | 3 | 1 | 416 | 928 | LHX2 |
| SE_02_117800293 | chr9:123999086-124019309 |
Sample_02_1178 | Brain | GBM07 | 293 | 8 | 509 | 3 | 1 | 424 | 928 | LHX2 |
| SE_02_061100200 | chr9:123999209-124080286 |
Sample_02_0611 | Liposarcoma | DDLPS_T1 | 200 | 17 | 2360 | 25 | 9 | 609 | 1173 | LHX2 |
| SE_02_129200728 | chr9:123999299-124018786 |
Sample_02_1292 | Lung | JHU-LX110-SCLC PDX | 728 | 8 | 489 | 3 | 1 | 415 | 928 | LHX2 |
| SE_02_027600132 | chr9:123999354-124019487 |
Sample_02_0276 | Retina | FW15 | 132 | 3 | 507 | 3 | 1 | 423 | 928 | LHX2 |
| SE_02_055500415 | chr9:123999591-124021783 |
Sample_02_0555 | Other | HAP1_WT | 415 | 5 | 577 | 3 | 3 | 439 | 1033 | LHX2 |
| SE_02_138400355 | chr9:123999758-124029764 |
Sample_02_1384 | Other | induced pluripotent stem cell derived Neuronal progenitor cell | 355 | 6 | 809 | 3 | 3 | 450 | 1033 | LHX2 |
| SE_01_006000025 | chr9:124000263-124019639 |
Sample_01_0060 | Embryo | radial-glial-cell | 25 | 4 | 510 | 3 | 1 | 391 | 928 | LHX2 |
| SE_02_129100274 | chr9:124000306-124009319 |
Sample_02_1291 | Lung | NCI-H889_p8-15 | 274 | 2 | 238 | 2 | 1 | 236 | 229 | LHX2 |
| SE_01_004700193 | chr9:124007731-124019493 |
Sample_01_0047 | Embryo | mid-neurogenesis-radial-glial-cells | 193 | 3 | 307 | 1 | 0 | 228 | 881 | LHX2 |
| SE_02_027900166 | chr9:124007912-124017716 |
Sample_02_0279 | Retina | RB | 166 | 3 | 258 | 0 | 0 | 202 | 843 | LHX2 |
| SE_02_097400428 | chr9:124008369-124018879 |
Sample_02_0974 | Brain | H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells | 428 | 2 | 274 | 1 | 0 | 194 | 800 | LHX2 |
| SE_02_036900731 | chr9:124010476-124019472 |
Sample_02_0369 | Skeletal muscle | RD | 731 | 2 | 236 | 1 | 0 | 151 | 650 | LHX2 |
| SE_02_037900731 | chr9:124010476-124019472 |
Sample_02_0379 | Skeletal muscle | RD-Fusion-Negative-Rhabdomyosarcoma | 731 | 2 | 236 | 1 | 0 | 151 | 650 | LHX2 |
| SE_02_119900564 | chr9:124010783-124046011 |
Sample_02_1199 | Brain | GBM35 | 564 | 5 | 969 | 8 | 2 | 300 | 895 | LHX2 |
| SE_02_093500108 | chr9:124011551-124046068 |
Sample_02_0935 | Retinal Pigmented Epithelial | RPE188_Con | 108 | 10 | 956 | 8 | 2 | 286 | 852 | LHX2 |
| SE_02_093700714 | chr9:124011611-124046075 |
Sample_02_0937 | Retinal Pigmented Epithelial | RPE190_Con | 714 | 16 | 955 | 8 | 2 | 280 | 841 | LHX2 |
| SE_02_093800462 | chr9:124011702-124079878 |
Sample_02_0938 | Retinal Pigmented Epithelial | RPE190_TnT | 462 | 14 | 2042 | 23 | 8 | 311 | 824 | LHX2 |
| SE_02_093600927 | chr9:124011735-124042379 |
Sample_02_0936 | Retinal Pigmented Epithelial | RPE188_TnT | 927 | 6 | 864 | 7 | 2 | 249 | 816 | LHX2 |
| SE_02_080100486 | chr9:124011769-124019120 |
Sample_02_0801 | Brain | 2235 | 486 | 2 | 195 | 1 | 0 | 125 | 560 | LHX2 |
| SE_02_108000747 | chr9:124015638-124030144 |
Sample_02_1080 | Muscle | JR1 shCtrl | 747 | 3 | 420 | 2 | 2 | 81 | 123 | LHX2 |
| SE_02_045300812 | chr9:124037495-124061366 |
Sample_02_0453 | Neuroblastoma | SJNB3 | 812 | 8 | 667 | 12 | 4 | 45 | 0 | LHX2 |
| SE_02_143400877 | chr9:124073537-124081168 |
Sample_02_1434 | Trophoblast | trophoblast stem cells | 877 | 1 | 228 | 0 | 2 | 32 | 0 | LHX2 |
| SE_02_143500790 | chr9:124074278-124080299 |
Sample_02_1435 | Trophoblast | trophoblast stem cells_MSX2_KD | 790 | 1 | 191 | 0 | 2 | 32 | 0 | LHX2 |
| SE_02_104602671 | chr9:124092648-124142099 |
Sample_02_1046 | Peripheral blood | CD4+ cells_CTCL1145 | 2671 | 10 | 1618 | 37 | 6 | 103 | 0 | LHX2 |
| SE_02_046501344 | chr9:124121755-124147203 |
Sample_02_0465 | Adipose | subcutaneous adipocytes | 1344 | 12 | 843 | 34 | 1 | 18 | 0 | LHX2 |
| SE_02_078300947 | chr9:124126958-124140001 |
Sample_02_0783 | Blood | MEC2 | 947 | 5 | 429 | 15 | 0 | 14 | 0 | LHX2 |
| SE_02_078200782 | chr9:124126986-124139903 |
Sample_02_0782 | Blood | MEC1 | 782 | 7 | 426 | 15 | 0 | 14 | 0 | LHX2 |
Genomic distribution of SEs associated with LHX2