SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000170423
Gene: KRT78 Gene type: protein_coding
Strand: - External links:
Genomic region: chr12:52837804-52849092 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_076200528 chr12:52815843-52879846 Sample_02_0762 Podocyte podocyte_CTL 528 18 2120 215 0 175 1923 KRT79,KRT78,KRT76,KRT4,KRT3,KRT8
SE_02_010100564 chr12:52826506-52875088 Sample_02_0101 Peripheral blood Macrophages_GM-CSF_72h_IFN-y 564 6 1584 134 0 140 1382 KRT79,KRT78,KRT3,KRT8,KRT76,KRT4
SE_02_149000091 chr12:52836247-52846448 Sample_02_1490 Lung H2087 91 3 316 18 0 28 508 KRT78,KRT3,KRT4,KRT79
SE_02_010500013 chr12:52836723-52880781 Sample_02_0105 Skin neonatal_keratinocytes 13 4 1409 159 1 116 897 KRT78,KRT3,KRT8,KRT79,KRT4
SE_00_001100027 chr12:52836997-52880161 Sample_00_0011 Esophagus esophagus 27 8 1388 155 1 116 897 KRT78,KRT3,KRT8,KRT79,KRT4
SE_01_010700079 chr12:52837690-52880178 Sample_01_0107 Esophagus esophagus squamous epithelium 79 6 1371 154 1 116 897 KRT78,KRT4,KRT79,KRT3,KRT8,KRT18,ZNF740,CSAD,IGFBP6,KRT1,TENC1,KRT77
SE_03_000300006 chr12:52845983-52879945 Sample_03_0003 Foreskin foreskin-keratinocyte-calcium5.5day 6 5 1098 134 0 90 465 KRT78,KRT3,KRT8,KRT79,KRT4
SE_02_009900143 chr12:52846321-52880339 Sample_02_0099 Foreskin Epidermal-Stem-Cells_shDNMT3B 143 6 1098 140 1 88 413 KRT78,KRT8,KRT79,KRT4
SE_00_004100371 chr12:52846719-52879894 Sample_00_0041 Stomach stomach_3y 371 7 1068 131 0 86 343 KRT78,KRT8,KRT79,KRT4
SE_01_007500676 chr12:52846844-52880299 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 676 6 1077 138 1 86 320 KRT78,KRT8,KRT79,KRT4
SE_02_102500742 chr12:52856803-52880151 Sample_02_1025 Esophagus KYSE150 742 10 722 121 1 51 0 KRT78,KRT4,KRT79,KRT8
SE_02_000900433 chr12:52856856-52876101 Sample_02_0009 Kidney 786-O_wtVHL 433 7 596 90 0 46 0 KRT8,KRT79,KRT78,KRT4
SE_02_006300058 chr12:52856916-52880679 Sample_02_0063 Skin Keratinocytes 58 3 730 123 1 51 0 KRT8,KRT79,KRT78,KRT4
SE_02_039600348 chr12:52857110-52880526 Sample_02_0396 Skin NHEK-D 348 7 722 122 1 51 0 KRT8,KRT79,KRT78,KRT4
SE_02_136000330 chr12:52857132-52880626 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 330 10 719 123 1 51 0 KRT78,KRT4,KRT79,KRT8
SE_02_022700040 chr12:52857208-52879653 Sample_02_0227 Oesophagus TE7 40 12 694 114 0 47 0 KRT8,KRT79,KRT78,KRT4
SE_02_048000560 chr12:52857218-52880022 Sample_02_0480 Gingival epithelial HGEP 560 16 704 117 0 51 0 KRT78,KRT4,KRT79,KRT8,KRT18
SE_02_047900744 chr12:52857241-52880067 Sample_02_0479 Head and neck SCC25 744 12 705 117 0 51 0 KRT78,KRT4,KRT79,KRT8
SE_02_050700046 chr12:52857271-52880457 Sample_02_0507 Esophagus TE7_1 46 18 715 122 1 51 0 KRT78,KRT4,KRT79,KRT8
SE_02_135900807 chr12:52857309-52880070 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 807 14 704 117 0 51 0 KRT78,KRT4,KRT79,KRT8
SE_02_050800052 chr12:52857401-52880094 Sample_02_0508 Esophagus TT_1 52 6 703 118 0 51 0 KRT78,KRT4,KRT79,KRT8
SE_02_051800052 chr12:52857401-52880094 Sample_02_0518 Esophagus TT_Esophagus carcinoma 52 6 703 118 0 51 0 KRT78,KRT4,KRT79,KRT8
SE_02_136600668 chr12:52857871-52879966 Sample_02_1366 Pancreas BxPC3-untreated 668 16 689 114 0 51 0 KRT78,KRT4,KRT79,KRT8
SE_02_104602014 chr12:52858638-52879655 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2014 13 662 111 0 47 0 KRT78,KRT4,KRT79,KRT8
SE_02_123000541 chr12:52859028-52879984 Sample_02_1230 Lung PC9 541 7 659 112 0 51 0 KRT78,KRT4,KRT79,KRT8
SE_03_000200018 chr12:52859120-52880040 Sample_03_0002 Foreskin foreskin-keratinocyte-calcium2.5day 18 5 658 114 0 51 0 KRT8,KRT79,KRT78,KRT4
SE_01_006100361 chr12:52859236-52880549 Sample_01_0061 Prostate RWPE1 361 7 665 119 1 51 0 KRT8,KRT79,KRT78,KRT4
SE_01_004100346 chr12:52859350-52879813 Sample_01_0041 Skin keratinocyte 346 4 644 110 0 47 0 KRT8,KRT79,KRT78,KRT4
SE_02_009700272 chr12:52859438-52880152 Sample_02_0097 Foreskin Epidermal-Stem-Cells_shCTRL 272 8 654 117 1 51 0 KRT8,KRT79,KRT78,KRT4
SE_02_060000512 chr12:52859443-52879998 Sample_02_0600 Mammary gland MCF10A_p53shRNA_DMSO 512 8 649 113 0 51 0 KRT78,KRT4,KRT79,KRT8
SE_02_112100111 chr12:52859477-52879998 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 111 14 648 113 0 51 0 KRT78,KRT4,KRT79,KRT8,EIF4B,KRT18,KRT3
SE_01_002700823 chr12:52859497-52879913 Sample_01_0027 Prostate epithelial-cell-of-prostate 823 6 642 110 0 51 0 KRT8,KRT79,KRT78,KRT4
SE_02_041500316 chr12:52859506-52875169 Sample_02_0415 Stomach YCC22 316 3 492 73 0 46 0 KRT8,KRT79,KRT78,KRT4
SE_02_019600019 chr12:52859509-52876140 Sample_02_0196 Stomach NCC59 19 5 528 86 0 46 0 KRT8,KRT79,KRT78,KRT4
SE_02_066600291 chr12:52859595-52876990 Sample_02_0666 Prostate RWPE1 Lacz rep1 291 9 549 90 0 46 0 KRT78,KRT4,KRT79,KRT8,KRT18,IGFBP6,ATF7,TENC1
SE_02_022800210 chr12:52859599-52880866 Sample_02_0228 Oesophagus KYSE510 210 4 666 120 1 51 0 KRT8,KRT79,KRT78,KRT4
SE_02_066500314 chr12:52859608-52875413 Sample_02_0665 Prostate RWPE1 Schlap1 rep1 314 4 501 76 0 46 0 KRT4,KRT8,KRT79,KRT78,KRT18,IGFBP6,ATF7,TENC1
SE_02_125400374 chr12:52859634-52880009 Sample_02_1254 Bladder Bladder tumor Basal1 374 9 643 113 0 51 0 KRT78,KRT4,KRT79,KRT8
SE_02_123300461 chr12:52859671-52875234 Sample_02_1233 Lung PC9_miR-4497 mimic 461 6 489 73 0 46 0 KRT4,KRT8,KRT79,KRT78
SE_02_094500021 chr12:52859690-52880069 Sample_02_0945 Brain SF767 21 3 641 113 0 51 0 KRT78,KRT4,KRT79,KRT8
SE_02_026600023 chr12:52859722-52879462 Sample_02_0266 Bronchial HBE_Primary human bronchial epithelial cells_ 23 15 626 110 0 47 0 KRT8,KRT79,KRT78,KRT4
SE_02_088201333 chr12:52859724-52885580 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 1333 4 816 152 1 51 0 KRT78,KRT4,KRT79,KRT8
SE_02_123200408 chr12:52859742-52874930 Sample_02_1232 Lung PC9_siMED13L-2 408 6 480 69 0 46 0 KRT4,KRT8,KRT79,KRT78
SE_02_069800284 chr12:52859766-52879685 Sample_02_0698 Lung NCI-H1048-cas9_sgPOU2F3 284 7 631 110 0 47 0 KRT78,KRT4,KRT79,KRT8
SE_02_020400027 chr12:52859827-52885433 Sample_02_0204 Stomach IM95 27 9 806 151 1 51 0 KRT8,KRT79,KRT78,KRT4
SE_02_113100583 chr12:52859974-52879472 Sample_02_1131 Pancreas T3M4 wt 583 14 621 110 0 47 0 KRT78,KRT4,KRT79,KRT8
SE_02_104301589 chr12:52860004-52882507 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1589 21 715 139 1 51 0 KRT78,KRT4,KRT79,KRT8
SE_02_021600542 chr12:52861959-52879669 Sample_02_0216 Skin NHEK_scramble 542 8 561 105 0 40 0 KRT8,KRT79,KRT78,KRT4
SE_02_032400118 chr12:52865002-52881856 Sample_02_0324 Colon SW48 118 2 540 121 1 43 0 KRT8,KRT79,KRT78
SE_02_102600078 chr12:52865322-52881189 Sample_02_1026 Esophagus KYSE200 78 2 512 114 1 43 0 KRT8,KRT79,KRT78
SE_02_051500087 chr12:52865472-52880078 Sample_02_0515 Esophagus KYSE140 87 5 474 103 0 42 0 KRT8,KRT79,KRT78
SE_02_050300088 chr12:52865485-52880078 Sample_02_0503 Esophagus KYSE140_1 88 5 474 103 0 42 0 KRT8,KRT79,KRT78
SE_02_102700434 chr12:52865575-52880473 Sample_02_1027 Esophagus KYSE180_1 434 9 483 108 1 41 0 KRT8,KRT79,KRT78
SE_02_153900251 chr12:52865576-52880086 Sample_02_1539 Nasopharyngeal C666-1 251 4 473 104 0 41 0 KRT8,KRT79,KRT78
SE_03_000100226 chr12:52866733-52879893 Sample_03_0001 Foreskin foreskin-keratinocyte 226 6 431 98 0 40 0 KRT8,KRT79,KRT78
SE_02_002100055 chr12:52866899-52880614 Sample_02_0021 Colon V429 55 1 440 105 1 41 0 KRT8,KRT79,KRT78
SE_03_001300808 chr12:52866930-52881001 Sample_03_0013 Lung A549 808 1 455 108 1 41 0 KRT8,KRT79,KRT78
SE_02_088400066 chr12:52867052-52881597 Sample_02_0884 Colon LoVo 66 1 474 112 1 41 0 KRT8,KRT79,KRT78
SE_02_133800200 chr12:52867114-52879919 Sample_02_1338 Esophagus KYSE180 200 9 413 93 0 41 0 KRT8,KRT79,KRT78
SE_02_122401001 chr12:52867560-52879581 Sample_02_1224 Bone marrow normal plasma cell 1001 6 391 91 0 35 0 KRT8,KRT79,KRT78
SE_04_000500169 chr12:52867561-52880508 Sample_04_0005 Lung A549 FOXA2 overexpressed 169 4 417 99 1 39 0 KRT8,KRT79,KRT78,EIF4B,KRT4,TENC1
SE_02_112000483 chr12:52867905-52879973 Sample_02_1120 Neonatal foreskin keratinocytes_CTR 483 8 394 91 0 39 0 KRT8,KRT79,KRT78
SE_02_069700649 chr12:52867946-52879622 Sample_02_0697 Lung NCI-H1048-cas9_sgHROSA 649 8 384 90 0 35 0 KRT8,KRT79,KRT78
SE_02_023700450 chr12:52868634-52880836 Sample_02_0237 Colon V389 450 1 405 96 1 38 0 KRT8,KRT79,KRT78
SE_03_001500701 chr12:52868809-52880931 Sample_03_0015 Lung A549_dexamethasone_8h 701 1 402 96 1 38 0 KRT8,KRT79,KRT78
SE_02_082700748 chr12:52869057-52880665 Sample_02_0827 Stomach normal gastric 748 8 386 93 1 37 0 KRT8,KRT79,KRT78
SE_02_068500749 chr12:52869062-52879605 Sample_02_0685 Lung NCI-H1048_no infection 749 4 358 84 0 33 0 KRT8,KRT79,KRT78
SE_02_126401050 chr12:52869248-52875571 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1050 2 227 50 0 32 0 KRT8,KRT79,KRT78
SE_03_001100381 chr12:52869278-52880807 Sample_03_0011 Lung A549_dexamethasone_5h 381 1 384 94 1 37 0 KRT8,KRT79,KRT78
SE_02_006900563 chr12:52869669-52880537 Sample_02_0069 Brain SF268 563 2 365 92 1 37 0 KRT8,KRT79,KRT78
SE_02_044000310 chr12:52869768-52880037 Sample_02_0440 Bone LM7 310 8 348 86 0 37 0 KRT8,KRT79,KRT78
SE_01_003600293 chr12:52869787-52875979 Sample_01_0036 Cervix HeLa-S3 293 1 222 55 0 32 0 KRT8,KRT79,KRT78
SE_02_047700552 chr12:52870045-52880166 Sample_02_0477 Colon intestinal epithelial organoids_139a 552 1 350 90 1 37 0 KRT8,KRT79,KRT78
SE_02_013300198 chr12:52870331-52879645 Sample_02_0133 Thymus TC-797_JQ1_4h 198 5 323 81 0 32 0 KRT8,KRT79,KRT78
SE_02_026800864 chr12:52870376-52879753 Sample_02_0268 Kidney A-498 864 3 327 79 0 32 0 KRT8,KRT79,KRT78
SE_02_019200073 chr12:52870525-52875348 Sample_02_0192 Stomach MKN45 73 1 187 44 0 29 0 KRT8,KRT79,KRT78
SE_00_005000023 chr12:52870917-52879322 Sample_00_0050 Esophagus esophagus_30y 23 6 298 77 0 29 0 KRT8,KRT79,KRT78,KRT18,IGFBP6,KRT4,KRT1,TENC1,KRT3,KRT77
SE_02_019700240 chr12:52872417-52880966 Sample_02_0197 Stomach SNU1750 240 3 301 83 1 22 0 KRT8,KRT79,KRT78
Genomic distribution of SEs associated with KRT78
Genome Browser

The strength of the tissue affected by the gene

Expression of KRT78

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)