SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000242522
Gene: KLHL6-AS1 Gene type: lncRNA
Strand: + External links:
Genomic region: chr3:183548735-183552326 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104300514 chr3:183468811-183564568 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 514 47 2912 202 3 120 1241 KLHL6,KLHL6-AS1,LINC00888,MCF2L2
SE_02_082600280 chr3:183468890-183560646 Sample_02_0826 Stomach gastric tumor 280 35 2800 196 2 120 1241 KLHL6,KLHL6-AS1,LINC00888,MCF2L2
SE_02_122400052 chr3:183468978-183560766 Sample_02_1224 Bone marrow normal plasma cell 52 36 2797 195 2 120 1241 KLHL6,KLHL6-AS1,LINC00888,MCF2L2
SE_02_104900564 chr3:183469578-183563369 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 564 59 2841 199 3 120 1241 KLHL6,KLHL6-AS1,LINC00888,MCF2L2
SE_02_130200107 chr3:183484834-183593833 Sample_02_1302 Lymphoma RL DMSO 107 33 3200 211 4 131 1241 KLHL6,KLHL6-AS1,LINC00888,KLHL24
SE_02_081700116 chr3:183485341-183564131 Sample_02_0817 Ovary Epithelial ovarian cancer 116 19 2365 158 2 118 1241 KLHL6,KLHL6-AS1,LINC00888
SE_02_122700036 chr3:183490191-183561050 Sample_02_1227 Bone marrow U266 36 27 2130 144 1 118 964 KLHL6,KLHL6-AS1,LINC00888
SE_02_077900225 chr3:183500953-183564634 Sample_02_0779 Lymphoma U2932 225 19 1906 121 1 75 262 KLHL6,KLHL6-AS1
SE_02_047600124 chr3:183501043-183559872 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 124 18 1774 113 0 75 262 KLHL6,KLHL6-AS1
SE_02_073500104 chr3:183503071-183556316 Sample_02_0735 Lymphoma PAR_Mantle cell lymphoma tissue_THZ1 104 11 1596 106 0 75 262 KLHL6,KLHL6-AS1
SE_02_099900076 chr3:183503080-183592983 Sample_02_0999 Lymphoma OCI-LY1_966 76 37 2616 170 3 88 262 KLHL6,KLHL6-AS1,KLHL24
SE_02_073400093 chr3:183503096-183556342 Sample_02_0734 Lymphoma PAR_Mantle cell lymphoma tissue_DMSO 93 16 1597 106 0 75 262 KLHL6,KLHL6-AS1
SE_02_122100331 chr3:183503113-183536371 Sample_02_1221 Bone marrow KMS11 331 11 956 71 0 36 170 KLHL6,KLHL6-AS1
SE_02_099800060 chr3:183503156-183593115 Sample_02_0998 Lymphoma OCI-LY1_DMSO 60 44 2616 170 3 88 262 KLHL6,KLHL6-AS1,KLHL24
SE_02_121900477 chr3:183503232-183560983 Sample_02_1219 Bone marrow H929 477 10 1726 115 0 75 262 KLHL6,KLHL6-AS1
SE_02_073900335 chr3:183503976-183519368 Sample_02_0739 Blood Nalm6 335 2 433 34 0 28 95 KLHL6,KLHL6-AS1,MCF2L2,YEATS2
SE_02_157300675 chr3:183506215-183556330 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 675 18 1521 103 0 72 262 KLHL6,KLHL6-AS1
SE_02_057300627 chr3:183506430-183519396 Sample_02_0573 Blood Nalm6_1 627 6 371 31 0 25 95 KLHL6,KLHL6-AS1,MCF2L2,YEATS2
SE_02_118500695 chr3:183506477-183556343 Sample_02_1185 Brain GBM14 695 18 1512 102 0 72 262 KLHL6,KLHL6-AS1
SE_02_088500657 chr3:183506850-183518660 Sample_02_0885 Blood NALM6_2 657 3 337 29 0 25 95 KLHL6,KLHL6-AS1,MCF2L2,YEATS2
SE_02_142900271 chr3:183507028-183556298 Sample_02_1429 Blood GM12878_WT 271 15 1498 101 0 71 262 KLHL6,KLHL6-AS1,MCF2L2,KLHL24,YEATS2
SE_02_046000306 chr3:183507040-183565107 Sample_02_0460 Blood ME-1_I-10-49_6h 306 15 1742 115 1 71 262 KLHL6,KLHL6-AS1
SE_02_121800197 chr3:183507065-183556372 Sample_02_1218 Bone marrow Daudi 197 17 1499 101 0 71 262 KLHL6,KLHL6-AS1,KLHL24,YEATS2
SE_02_061200320 chr3:183507156-183556341 Sample_02_0612 Liposarcoma DDLPS_T2 320 21 1496 101 0 71 262 KLHL6,KLHL6-AS1
SE_02_145800178 chr3:183507209-183555667 Sample_02_1458 Pancreas THP1+PANC1_shNC 178 13 1471 100 0 61 232 KLHL6,KLHL6-AS1
SE_02_145900199 chr3:183507219-183552692 Sample_02_1459 Pancreas THP1+PANC1_shCTCF 199 10 1360 92 0 48 170 KLHL6,KLHL6-AS1
SE_02_081600873 chr3:183507228-183561127 Sample_02_0816 Ovary Clear cell ovarian cancer 873 27 1632 111 1 71 262 KLHL6,KLHL6-AS1
SE_02_115300140 chr3:183507232-183593519 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 140 15 2529 166 3 84 262 KLHL6,KLHL6-AS1,KLHL24
SE_02_122500066 chr3:183507614-183555691 Sample_02_1225 Bone marrow RAJI 66 23 1461 100 0 61 234 KLHL6,KLHL6-AS1
SE_00_005600974 chr3:183508104-183553962 Sample_00_0056 Sigmoid colon sigmoid colon 3y 974 18 1373 96 0 49 138 KLHL6,KLHL6-AS1
SE_02_073300169 chr3:183509011-183556401 Sample_02_0733 Lymphoma L20_Mantle cell lymphoma tissue_THZ1 169 14 1433 96 0 55 167 KLHL6,KLHL6-AS1
SE_02_103400618 chr3:183509095-183558931 Sample_02_1034 Blood AML cell 618 12 1513 101 0 55 167 KLHL6,KLHL6-AS1
SE_02_130400072 chr3:183509170-183594789 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 72 25 2525 168 3 68 167 KLHL6,KLHL6-AS1,KLHL24
SE_02_073200156 chr3:183509940-183556478 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 156 12 1419 96 0 55 167 KLHL6,KLHL6-AS1
SE_01_009600101 chr3:183510095-183593385 Sample_01_0096 B-cell lymphoma DOHH2 101 30 2435 159 3 66 167 KLHL6,KLHL6-AS1,KLHL24
SE_02_124800598 chr3:183510263-183521065 Sample_02_1248 Bladder RT4 598 3 300 28 0 5 0 KLHL6,KLHL6-AS1
SE_02_115500208 chr3:183510313-183593293 Sample_02_1155 Lymphoma RL_R1446C_gRNA1_KDAC005 208 15 2424 159 3 65 167 KLHL6,KLHL6-AS1,KLHL24
SE_02_072900208 chr3:183510333-183556494 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 208 16 1409 96 0 52 167 KLHL6,KLHL6-AS1
SE_02_115200278 chr3:183510358-183593101 Sample_02_1152 Lymphoma RL_WT_gRNA1 278 16 2420 159 3 65 167 KLHL6,KLHL6-AS1,KLHL24
SE_02_072800242 chr3:183510435-183556360 Sample_02_0728 Lymphoma I10_Mantle cell lymphoma tissue_DMSO 242 14 1398 94 0 52 167 KLHL6,KLHL6-AS1
SE_02_075700740 chr3:183510475-183534071 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 740 3 677 52 0 12 75 KLHL6,KLHL6-AS1
SE_02_073000290 chr3:183510528-183556595 Sample_02_0730 Lymphoma J4_Mantle cell lymphoma tissue_DMSO 290 12 1408 95 0 52 167 KLHL6,KLHL6-AS1
SE_02_075000905 chr3:183510529-183554025 Sample_02_0750 Lymphoma Rec-1_GSI 905 20 1300 89 0 33 75 KLHL6,KLHL6-AS1
SE_02_073600086 chr3:183510558-183555150 Sample_02_0736 Blood Pt24_leukemia cell_THZ1 86 17 1347 92 0 33 75 KLHL6,KLHL6-AS1
SE_02_073100341 chr3:183510579-183556377 Sample_02_0731 Lymphoma J4_Mantle cell lymphoma tissue_THZ1 341 14 1397 94 0 52 167 KLHL6,KLHL6-AS1
SE_02_078400283 chr3:183510855-183565016 Sample_02_0784 Blood OSU-CLL 283 17 1624 106 1 52 167 KLHL6,KLHL6-AS1
SE_02_115600119 chr3:183511089-183553985 Sample_02_1156 Peripheral blood Day6 Plasmablast CD23- memory B cell 119 15 1273 87 0 33 75 KLHL6,KLHL6-AS1
SE_02_115700168 chr3:183511225-183553594 Sample_02_1157 Peripheral blood Day6 Plasmablast CD23- memory B cell_G9A-Inhibited 168 26 1264 87 0 30 75 KLHL6,KLHL6-AS1
SE_02_075300865 chr3:183511250-183534091 Sample_02_0753 Embryo ES-derived progenitors_FG type 865 3 646 50 0 12 75 KLHL6,KLHL6-AS1
SE_02_101701575 chr3:183511295-183564772 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1575 10 1608 106 1 52 167 KLHL6,KLHL6-AS1
SE_02_083400532 chr3:183511471-183592357 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 532 16 2362 156 3 65 167 KLHL6,KLHL6-AS1,KLHL24
SE_02_083500655 chr3:183511627-183565326 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 655 13 1605 106 1 52 167 KLHL6,KLHL6-AS1
SE_02_083300513 chr3:183511683-183565241 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 513 14 1597 106 1 52 167 KLHL6,KLHL6-AS1
SE_02_083600587 chr3:183511811-183588445 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 587 18 2223 146 2 60 167 KLHL6,KLHL6-AS1,KLHL24
SE_02_140200011 chr3:183512017-183554862 Sample_02_1402 Blood MM.1S_GNE-781 11 11 1276 89 0 33 75 KLHL6,KLHL6-AS1
SE_02_045900652 chr3:183513244-183588740 Sample_02_0459 Blood ME-1_DMSO_6h 652 15 2188 141 2 60 167 KLHL6,KLHL6-AS1,KLHL24
SE_02_045700736 chr3:183515508-183556508 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 736 8 1243 82 0 52 167 KLHL6,KLHL6-AS1
SE_02_139300459 chr3:183526806-183556316 Sample_02_1393 Lymph node anaplastic large cell lymphoma cells_ALK+#54 459 5 924 48 0 47 167 KLHL6,KLHL6-AS1
SE_02_057900579 chr3:183533364-183566350 Sample_02_0579 Blood HEL_sgNeg2 579 9 1020 58 1 40 92 KLHL6,KLHL6-AS1
Genomic distribution of SEs associated with KLHL6-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of KLHL6-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)