SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000115041
Gene: KCNIP3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr2:95297327-95386077 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104600313 chr2:95257397-95333988 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 313 37 2107 103 4 241 3666 KCNIP3,PROM2
SE_02_039600212 chr2:95259111-95360021 Sample_02_0396 Skin NHEK-D 212 25 2655 133 4 297 3819 KCNIP3,PROM2,FAHD2A
SE_02_076500212 chr2:95273179-95310478 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 212 11 1036 57 1 190 2948 KCNIP3,PROM2
SE_02_110500941 chr2:95275854-95331944 Sample_02_1105 Brain NBL-S 941 21 1603 83 1 217 3341 KCNIP3,PROM2
SE_02_021600282 chr2:95277997-95317724 Sample_02_0216 Skin NHEK_scramble 282 7 1099 64 1 156 2801 KCNIP3,PROM2
SE_02_123700738 chr2:95287607-95309058 Sample_02_1237 Skin MKL2_virus_positive 738 9 561 36 1 78 822 KCNIP3,PROM2
SE_02_123900663 chr2:95287653-95309129 Sample_02_1239 Skin Waga_virus_positive 663 10 559 38 1 78 816 KCNIP3,PROM2
SE_02_120400451 chr2:95289506-95317475 Sample_02_1204 Brain NB2 451 8 748 46 1 81 1258 KCNIP3,PROM2
SE_02_096600200 chr2:95292332-95317671 Sample_02_0966 Brain H3.3K27M_JN29-BS3 200 20 710 44 1 70 907 KCNIP3,PROM2
SE_02_158100363 chr2:95292459-95346478 Sample_02_1581 Renal OS-LM1 363 15 1465 76 1 125 907 KCNIP3,PROM2
SE_02_100800127 chr2:95292969-95317353 Sample_02_1008 Brain Lateral temporal lobe_1T_AD 127 12 681 42 1 68 907 KCNIP3,PROM2
SE_02_121300495 chr2:95293120-95318215 Sample_02_1213 Brain GBM31 495 5 702 44 1 71 907 KCNIP3,PROM2
SE_02_096200347 chr2:95293369-95331319 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 347 10 1085 62 1 94 907 KCNIP3,PROM2
SE_02_097100528 chr2:95293438-95317438 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 528 12 667 42 1 68 907 KCNIP3,PROM2
SE_02_118400500 chr2:95293961-95317260 Sample_02_1184 Brain GBM13 500 16 649 42 1 68 907 KCNIP3,PROM2
SE_02_120300565 chr2:95294516-95317662 Sample_02_1203 Brain NB1 565 10 650 43 1 67 907 KCNIP3,PROM2
SE_02_097900874 chr2:95294521-95315089 Sample_02_0979 Brain JN14-BS1_H3.3K27M 874 12 563 40 1 61 907 KCNIP3,PROM2
SE_02_117900110 chr2:95294548-95317405 Sample_02_1179 Brain GBM08 110 4 637 41 1 67 907 KCNIP3,PROM2
SE_02_096900228 chr2:95294686-95334368 Sample_02_0969 Brain H3.3K27M_PL637 228 16 1128 64 1 104 907 KCNIP3,PROM2
SE_02_101300251 chr2:95294706-95317562 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 251 19 636 43 1 67 907 KCNIP3,PROM2
SE_02_097000319 chr2:95295209-95334990 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 319 11 1126 63 1 104 907 KCNIP3,PROM2
SE_02_120501284 chr2:95295233-95317100 Sample_02_1205 Brain NB3 1284 13 609 40 1 66 907 KCNIP3,PROM2
SE_02_100600132 chr2:95295276-95313509 Sample_02_1006 Brain Lateral temporal lobe_13T_Old 132 5 503 36 1 58 810 KCNIP3,PROM2,FAHD2A,MRPS5,ZNF514
SE_02_118100793 chr2:95295535-95317626 Sample_02_1181 Brain GBM10 793 7 614 42 1 65 907 KCNIP3,PROM2
SE_01_008700660 chr2:95295731-95311093 Sample_01_0087 Thyroid gland thyroid-gland 660 1 406 32 1 54 319 KCNIP3,PROM2
SE_02_100900305 chr2:95299924-95316865 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 305 8 473 33 1 39 789 KCNIP3,PROM2
SE_02_010800063 chr2:95299997-95349853 Sample_02_0108 Fallopian tube FT246 63 8 1346 74 1 122 942 KCNIP3,PROM2
SE_02_096100384 chr2:95300655-95314894 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 384 4 393 29 1 32 789 KCNIP3,PROM2
SE_02_044200515 chr2:95303171-95335087 Sample_02_0442 Bone MG63.3 515 21 912 48 0 64 789 KCNIP3,PROM2
SE_02_113700234 chr2:95309668-95359752 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 234 14 1333 61 0 106 942 KCNIP3,PROM2,FAHD2A
SE_02_061600205 chr2:95309923-95359885 Sample_02_0616 Liposarcoma liposarcoma cells_LP6 205 15 1324 61 0 106 942 KCNIP3,PROM2,FAHD2A
SE_02_061001278 chr2:95310144-95334740 Sample_02_0610 Liposarcoma MLS 1765-92 1278 4 723 30 0 59 789 KCNIP3,PROM2
SE_02_077001111 chr2:95312828-95344614 Sample_02_0770 Ovary OVCA429_shLuc 1111 19 855 36 0 53 254 KCNIP3,PROM2
SE_02_011600704 chr2:95314096-95324048 Sample_02_0116 Mammary gland MDA-MB-231_untreat 704 2 260 14 0 11 0 KCNIP3,PROM2
SE_02_006900059 chr2:95314270-95360172 Sample_02_0069 Brain SF268 59 5 1198 57 0 91 153 KCNIP3,PROM2,FAHD2A
SE_00_002300400 chr2:95314282-95346250 Sample_00_0023 Embryo mesenchymal-stem-cell 400 5 854 35 0 58 0 KCNIP3,PROM2
SE_02_076300170 chr2:95314294-95359981 Sample_02_0763 Podocyte podocyte_DEX 170 5 1195 56 0 91 153 KCNIP3,PROM2,FAHD2A
SE_02_111100830 chr2:95314395-95360085 Sample_02_1111 Other HGrC1_SMAD2/3KO 830 17 1196 57 0 91 153 KCNIP3,PROM2,FAHD2A
SE_02_076201475 chr2:95314491-95360044 Sample_02_0762 Podocyte podocyte_CTL 1475 11 1193 57 0 91 153 KCNIP3,PROM2,FAHD2A
SE_02_114800326 chr2:95314559-95331919 Sample_02_1148 Kidney WT 9-12_control_vehicle 326 4 518 22 0 32 0 KCNIP3,PROM2
SE_02_127100788 chr2:95314569-95346255 Sample_02_1271 Leiomyosarcoma SK-LMS-1_WT 788 9 851 35 0 58 0 KCNIP3,PROM2
SE_02_114900282 chr2:95314671-95334909 Sample_02_1149 Kidney WT 9-12_control_Nrf2_SFN 282 4 597 24 0 44 0 KCNIP3,PROM2
SE_02_132800754 chr2:95314688-95345493 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 754 8 831 33 0 54 0 KCNIP3,PROM2
SE_02_156600723 chr2:95314958-95359950 Sample_02_1566 Dermal Dermal fibroblast 723 14 1182 55 0 91 153 KCNIP3,PROM2,FAHD2A
SE_01_008700919 chr2:95327429-95352969 Sample_01_0087 Thyroid gland thyroid-gland 919 3 625 29 0 79 153 KCNIP3,FAHD2A
SE_02_018500581 chr2:95330058-95346593 Sample_02_0185 Skin UACC257 581 4 391 15 0 38 0 KCNIP3
Genomic distribution of SEs associated with KCNIP3
Genome Browser

The strength of the tissue affected by the gene

Expression of KCNIP3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)