SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000107521
Gene: HPS1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr10:98416198-98446947 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_038100163 chr10:98399166-98467588 Sample_02_0381 Heart purified cardiomyocyte WT 163 6 2050 302 61 223 3385 HPSE2,PYROXD2,HPS1,MIR1287
SE_02_038200235 chr10:98399593-98467909 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 235 9 2048 302 60 228 3385 HPSE2,PYROXD2,HPS1,MIR1287
SE_02_086400076 chr10:98424423-98492251 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 76 11 1917 225 6 274 1971 HPS1,MIR4685,HPSE2,PYROXD2,MIR1287
SE_02_146600080 chr10:98425407-98467885 Sample_02_1466 Blood HUDEP-2_BCL11AKO 80 9 1233 156 3 144 1790 HPS1,MIR4685,HPSE2,PYROXD2,MIR1287
SE_02_109600351 chr10:98443066-98467460 Sample_02_1096 Blood CD34 Erythroid cells_Don003 351 6 677 82 0 86 775 HPS1,HPSE2,MIR4685,PYROXD2,MIR1287
SE_02_086600084 chr10:98443246-98492083 Sample_02_0866 Malignant rhaboid tumor TTC1240_SMARCB1_delCC 84 5 1333 151 3 216 882 HPS1,HPSE2,MIR4685,PYROXD2,MIR1287
SE_02_086500072 chr10:98443349-98492236 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 72 7 1336 152 3 216 866 HPS1,HPSE2,MIR4685,PYROXD2,MIR1287
SE_02_068000029 chr10:98443559-98472709 Sample_02_0680 Embryo H1 hESC-derived neural progenitor cells_Smad_48hr 29 13 787 108 1 116 720 HPS1,HPSE2,MIR4685,PYROXD2,MIR1287
SE_02_001600187 chr10:98443949-98467954 Sample_02_0016 Blood erythroblasts 187 2 654 84 0 90 720 HPSE2,HPS1,MIR1287,PYROXD2
SE_02_101800084 chr10:98444442-98468023 Sample_02_1018 Erythroblast CD34+ Hematopoietic stem/progenitor cells_12 days 84 7 636 84 0 90 720 HPS1,HPSE2,MIR4685,PYROXD2,MIR1287
SE_02_086200162 chr10:98454987-98475957 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 162 1 600 113 1 109 466 HPSE2,MIR4685,PYROXD2,HPS1
SE_02_086300157 chr10:98455043-98475969 Sample_02_0863 Malignant rhaboid tumor TTC1240_empty 157 1 597 113 1 109 466 HPSE2,MIR4685,PYROXD2,HPS1
SE_02_146800263 chr10:98455173-98468105 Sample_02_1468 Blood HUDEP-2_WT 263 1 381 67 0 81 466 HPSE2,MIR4685,PYROXD2,HPS1
SE_02_136300423 chr10:98456107-98468182 Sample_02_1363 Blood Hudep2 423 6 361 65 0 82 466 HPSE2,MIR4685,PYROXD2,HPS1
SE_02_146700221 chr10:98456251-98468363 Sample_02_1467 Blood HUDEP-2_LRFKO 221 1 357 64 0 82 466 HPSE2,MIR4685,PYROXD2,HPS1
SE_02_018400426 chr10:98460991-98490597 Sample_02_0184 Skin SKMEL30 426 8 811 84 3 155 181 HPSE2,HPS1,PYROXD2
SE_02_086300234 chr10:98476352-98492411 Sample_02_0863 Malignant rhaboid tumor TTC1240_empty 234 1 437 22 2 95 140 HPSE2,MIR4685,HPS1
SE_02_086200287 chr10:98476439-98492331 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 287 1 433 22 2 95 140 HPSE2,MIR4685,HPS1
SE_02_086200344 chr10:98510271-98535862 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 344 7 720 65 2 78 0 HPSE2,HPS1
SE_02_086300305 chr10:98510309-98534174 Sample_02_0863 Malignant rhaboid tumor TTC1240_empty 305 6 673 62 2 73 0 HPSE2,HPS1
SE_02_086500415 chr10:98515084-98533268 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 415 6 506 51 2 39 0 HPSE2,HPS1
SE_02_086400414 chr10:98515409-98532561 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 414 5 480 48 2 38 0 HPSE2,HPS1
SE_02_086600418 chr10:98515461-98532509 Sample_02_0866 Malignant rhaboid tumor TTC1240_SMARCB1_delCC 418 6 477 48 2 38 0 HPSE2,HPS1
SE_02_152400580 chr10:98522855-98541486 Sample_02_1524 Lung H3122 DMSO 580 5 534 45 3 87 0 HPSE2,HPS1
SE_02_086300032 chr10:98548014-98691200 Sample_02_0863 Malignant rhaboid tumor TTC1240_empty 32 32 3682 330 21 373 156 HPSE2,HPS1
SE_02_086400075 chr10:98548669-98591183 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 75 6 1198 160 13 125 0 HPSE2,HPS1
SE_02_086500069 chr10:98548930-98593991 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 69 7 1268 161 13 130 0 HPSE2,HPS1
SE_02_086200060 chr10:98549385-98623948 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 60 11 2079 204 15 227 99 HPSE2,HPS1
SE_02_086600024 chr10:98549456-98686316 Sample_02_0866 Malignant rhaboid tumor TTC1240_SMARCB1_delCC 24 26 3519 311 21 371 156 HPSE2,HPS1
SE_02_154400476 chr10:98554095-98589948 Sample_02_1544 Gastrointestinal Stromal GIST-882 476 12 998 145 11 119 0 HPSE2,HPS1
SE_02_152400599 chr10:98555786-98588584 Sample_02_1524 Lung H3122 DMSO 599 7 909 138 10 100 0 HPSE2,HPS1
SE_02_154200415 chr10:98610454-98629372 Sample_02_1542 Gastrointestinal Stromal GIST-T1 415 6 476 25 2 118 99 HPSE2,HPS1
SE_02_055600190 chr10:98618570-98649496 Sample_02_0556 iPSCs BOFS hiPSC cl1 190 6 756 45 4 143 115 HPSE2,HPS1
SE_02_155100065 chr10:98630335-98677571 Sample_02_1551 Gastrointestinal Stromal MaMel 65 11 1081 80 3 105 57 HPSE2,HPS1
SE_02_086400204 chr10:98644360-98686609 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 204 12 939 74 4 67 0 HPSE2,HPS1
SE_02_086200191 chr10:98644718-98686480 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 191 9 931 73 4 67 0 HPSE2,HPS1
SE_02_086500177 chr10:98645420-98693867 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 177 16 1078 97 4 78 7 HPSE2,HPS1
SE_02_033600253 chr10:98745169-98792818 Sample_02_0336 Haematopoietic and lymphoid tissue SET2 253 4 1074 35 1 32 0 HPSE2,HPS1
Genomic distribution of SEs associated with HPS1
Genome Browser

The strength of the tissue affected by the gene

Expression of HPS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)