SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000177733
Gene: HNRNPA0 Gene type: protein_coding
Strand: - External links:
Genomic region: chr5:137745651-137754363 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_003601173 chr5:137734929-137755626 Sample_02_0036 Embryo H7 1173 3 506 18 0 129 636 KLHL3,HNRNPA0,NPY6R
SE_01_006900839 chr5:137747539-137755714 Sample_01_0069 Adrenal gland adrenal-gland 839 2 214 8 0 92 500 HNRNPA0,NPY6R,KLHL3
SE_02_153200742 chr5:137750829-137755531 Sample_02_1532 Mammary gland MCF10A 742 1 131 5 0 92 500 HNRNPA0,NPY6R,KLHL3
SE_02_126401090 chr5:137751068-137761909 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1090 2 271 8 0 92 500 HNRNPA0,NPY6R,KLHL3
SE_00_000800542 chr5:137751069-137755751 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 542 1 124 5 0 92 500 HNRNPA0,NPY6R,KLHL3
SE_02_142800914 chr5:137751157-137761980 Sample_02_1428 Shoulder fibroblast_316 914 3 270 8 0 92 500 HNRNPA0,NPY6R,KLHL3
SE_02_126501111 chr5:137751188-137762294 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 1111 2 274 8 0 92 500 HNRNPA0,NPY6R,KLHL3
SE_02_028400576 chr5:137751196-137755802 Sample_02_0284 Pelvis patient 119 576 1 125 5 0 92 500 HNRNPA0,NPY6R,KLHL3
SE_02_127300999 chr5:137751337-137764352 Sample_02_1273 Cervix HeLa 999 5 305 9 0 92 486 HNRNPA0,NPY6R,KLHL3
SE_02_064500666 chr5:137751379-137755402 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 666 2 106 4 0 92 484 HNRNPA0,NPY6R,KLHL3
SE_01_008400792 chr5:137751464-137756015 Sample_01_0084 Spleen spleen 792 1 126 5 0 92 481 HNRNPA0,NPY6R,KLHL3
SE_01_003300559 chr5:137751471-137755687 Sample_01_0033 Embryo H9 559 1 116 5 0 92 481 HNRNPA0,NPY6R,KLHL3
SE_00_003601442 chr5:137751478-137755659 Sample_00_0036 Small intestine small-intestine_108days 1442 1 116 5 0 92 481 HNRNPA0,NPY6R,KLHL3
SE_02_122301064 chr5:137751497-137755713 Sample_02_1223 Bone marrow KMS28BM 1064 2 116 5 0 92 481 HNRNPA0,NPY6R,KLHL3
SE_02_139400498 chr5:137751513-137755521 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 498 1 115 5 0 92 480 HNRNPA0,NPY6R,KLHL3
SE_02_055500773 chr5:137751523-137755692 Sample_02_0555 Other HAP1_WT 773 1 115 5 0 92 480 HNRNPA0,NPY6R,KLHL3
SE_02_143100366 chr5:137751528-137755859 Sample_02_1431 Blood T cell 366 1 121 5 0 92 479 HNRNPA0,NPY6R,KLHL3
SE_00_000900474 chr5:137751536-137755676 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 474 1 115 5 0 92 477 HNRNPA0,NPY6R,KLHL3
SE_02_142700629 chr5:137751538-137755602 Sample_02_1427 Shoulder fibroblast_343 629 2 115 5 0 92 477 HNRNPA0,NPY6R,KLHL3
SE_01_010400874 chr5:137751568-137755683 Sample_01_0104 Lung upper lobe of left lung 874 1 115 5 0 92 474 HNRNPA0,NPY6R,KLHL3
SE_02_126601181 chr5:137751585-137762168 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 1181 3 263 8 0 91 474 HNRNPA0,NPY6R,KLHL3
SE_01_010701179 chr5:137751590-137758692 Sample_01_0107 Esophagus esophagus squamous epithelium 1179 3 176 6 0 91 474 HNRNPA0,NPY6R,KLHL3
SE_02_049301031 chr5:137751594-137758770 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 1031 3 179 6 0 90 474 HNRNPA0,NPY6R,KLHL3
SE_02_058400761 chr5:137751601-137755524 Sample_02_0584 Lung H1299 WT 761 1 112 5 0 88 474 HNRNPA0,NPY6R,KLHL3
SE_02_002200737 chr5:137751628-137755522 Sample_02_0022 Blood CD8donorA 737 2 112 5 0 87 472 HNRNPA0,NPY6R,KLHL3
SE_02_126900729 chr5:137751650-137761901 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 729 2 261 8 0 87 470 HNRNPA0,NPY6R,KLHL3
SE_02_101701716 chr5:137751653-137755823 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1716 1 117 5 0 87 470 HNRNPA0,NPY6R,KLHL3
SE_02_061501098 chr5:137751665-137755572 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 1098 2 112 5 0 87 470 HNRNPA0,NPY6R,KLHL3
SE_02_078000508 chr5:137751676-137762961 Sample_02_0780 Liver SMMC-7721 508 4 279 8 0 82 470 HNRNPA0,NPY6R,KLHL3
SE_02_158401320 chr5:137751786-137755669 Sample_02_1584 Brain U87 GBM_Mock 1320 1 109 5 0 78 463 HNRNPA0,NPY6R,KLHL3
SE_02_088400980 chr5:137751835-137755740 Sample_02_0884 Colon LoVo 980 1 110 5 0 75 459 HNRNPA0,NPY6R,KLHL3
SE_02_140500178 chr5:137751835-137755744 Sample_02_1405 Embryonic kidney HEK293_siBAHD1_W667G_mutant 178 1 110 5 0 75 459 HNRNPA0,NPY6R,KLHL3
SE_02_003200667 chr5:137751845-137756046 Sample_02_0032 Pancreas pancreatic-islets-M 667 1 119 5 0 75 459 HNRNPA0,NPY6R,KLHL3
SE_00_002501050 chr5:137751893-137755653 Sample_00_0025 Muscle of leg muscle-of-leg 1050 1 108 5 0 75 455 HNRNPA0,NPY6R,KLHL3
SE_00_002700539 chr5:137751906-137755806 Sample_00_0027 Blood natural-killer-cell 539 1 111 5 0 75 455 HNRNPA0,NPY6R,KLHL3
SE_00_004300628 chr5:137751936-137755662 Sample_00_0043 Stomach stomach_96d 628 1 107 5 0 75 452 HNRNPA0,NPY6R,KLHL3
SE_01_006000158 chr5:137751976-137755455 Sample_01_0060 Embryo radial-glial-cell 158 1 99 4 0 75 450 HNRNPA0,NPY6R,KLHL3
SE_02_111400130 chr5:137752075-137755467 Sample_02_1114 Embryonic kidney HEK293 130 1 98 4 0 73 441 HNRNPA0,NPY6R,KLHL3
SE_00_002600749 chr5:137752089-137755576 Sample_00_0026 Muscle of trunk muscle-of-trunk 749 1 102 5 0 73 439 HNRNPA0,NPY6R,KLHL3
SE_01_009900709 chr5:137752106-137755456 Sample_01_0099 Colon transverse colon 709 1 94 4 0 73 437 HNRNPA0,NPY6R,KLHL3
SE_02_144800245 chr5:137752109-137755437 Sample_02_1448 Adipose SW872_YAP5SA 245 1 94 4 0 73 437 HNRNPA0,NPY6R,KLHL3
SE_02_142600501 chr5:137752122-137755445 Sample_02_1426 Shoulder fibroblast_341 501 1 92 4 0 73 437 HNRNPA0,NPY6R,KLHL3
SE_01_007500939 chr5:137752124-137755754 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 939 1 101 5 0 73 437 HNRNPA0,NPY6R,KLHL3
SE_02_064600419 chr5:137752160-137755454 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 419 1 90 4 0 73 434 HNRNPA0,NPY6R,KLHL3
SE_02_140400190 chr5:137752168-137755481 Sample_02_1404 Embryonic kidney HEK293_siBAHD1_WT 190 1 92 5 0 72 434 HNRNPA0,NPY6R,KLHL3
SE_01_003701118 chr5:137752175-137755933 Sample_01_0037 Liver hepatocyte 1118 1 104 5 0 72 434 HNRNPA0,NPY6R,KLHL3
SE_02_081600955 chr5:137752182-137755558 Sample_02_0816 Ovary Clear cell ovarian cancer 955 1 95 5 0 72 432 HNRNPA0,NPY6R,KLHL3
SE_00_000301238 chr5:137752187-137755679 Sample_00_0003 Adrenal gland adrenal-gland_97d 1238 1 96 5 0 72 432 HNRNPA0,NPY6R,KLHL3
SE_02_126100471 chr5:137752206-137755444 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 471 1 88 4 0 72 429 HNRNPA0,NPY6R,KLHL3
SE_02_136300518 chr5:137752226-137755657 Sample_02_1363 Blood Hudep2 518 1 94 5 0 72 427 HNRNPA0,NPY6R,KLHL3
SE_02_120200571 chr5:137752248-137755499 Sample_02_1202 Brain GBM38 571 1 91 5 0 72 426 HNRNPA0,NPY6R,KLHL3
SE_02_136500794 chr5:137752278-137755421 Sample_02_1365 Pancreas AsPC1-untreated 794 1 85 4 0 71 426 HNRNPA0,NPY6R,KLHL3
SE_02_117600187 chr5:137752294-137755579 Sample_02_1176 Brain GBM04 187 1 93 5 0 70 426 HNRNPA0,NPY6R,KLHL3
SE_02_144400415 chr5:137752312-137755677 Sample_02_1444 Adipose SW872_Empty Vector 415 1 92 5 0 70 426 HNRNPA0,NPY6R,KLHL3
SE_00_000600499 chr5:137752519-137755790 Sample_00_0006 Blood CD14-positive-monocyte 499 1 90 3 0 65 408 HNRNPA0,NPY6R,KLHL3
SE_00_003900538 chr5:137752605-137755733 Sample_00_0039 Spleen spleen_3y 538 1 86 3 0 65 401 HNRNPA0,NPY6R,KLHL3
SE_00_003401127 chr5:137752651-137755541 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 1127 1 84 3 0 62 401 HNRNPA0,NPY6R,KLHL3
SE_02_003801699 chr5:137752657-137755629 Sample_02_0038 Embryo DE 1699 1 85 3 0 62 401 HNRNPA0,NPY6R,KLHL3
SE_00_002200695 chr5:137752668-137755631 Sample_00_0022 Lung lung_30y 695 1 84 3 0 62 400 HNRNPA0,NPY6R,KLHL3
SE_02_001900823 chr5:137752713-137755555 Sample_02_0019 Embryo Neural crest cells 823 1 83 3 0 62 395 HNRNPA0,NPY6R,KLHL3
SE_00_004200440 chr5:137752722-137755616 Sample_00_0042 Stomach stomach_30y 440 1 83 3 0 62 395 HNRNPA0,NPY6R,KLHL3
SE_02_001700641 chr5:137752728-137755583 Sample_02_0017 Embryo H9_ESC 641 1 82 3 0 62 394 HNRNPA0,NPY6R,KLHL3
SE_00_004000366 chr5:137752752-137755601 Sample_00_0040 Spleen spleen_30y 366 1 83 3 0 58 393 HNRNPA0,NPY6R,KLHL3
SE_02_004500714 chr5:137752788-137755444 Sample_02_0045 Embryo endodermal CyT49_ES_D7 714 1 74 2 0 55 378 HNRNPA0,NPY6R,KLHL3
SE_02_004600357 chr5:137752806-137755620 Sample_02_0046 Embryo endodermal CyT49_ES_D10 357 1 82 3 0 55 378 HNRNPA0,NPY6R,KLHL3
SE_00_003500718 chr5:137752822-137755544 Sample_00_0035 Sigmoid colon sigmoid-colon 718 1 81 3 0 55 373 HNRNPA0,NPY6R,KLHL3
SE_00_002900767 chr5:137752857-137755484 Sample_00_0029 Ovary ovary 767 1 75 3 0 53 368 HNRNPA0,NPY6R,KLHL3
SE_00_001600294 chr5:137752896-137755631 Sample_00_0016 Foreskin iPS-DF-19.11 299 1 80 3 0 50 366 HNRNPA0,NPY6R,KLHL3
SE_00_001000571 chr5:137753121-137755570 Sample_00_0010 Embryo endodermal-cell 571 1 68 2 0 48 318 HNRNPA0,NPY6R,KLHL3
SE_00_000100131 chr5:137753507-137754792 Sample_00_0001 Adipose adipose-tissue 131 4 34 0 0 38 225 HNRNPA0,NPY6R,KLHL3
Genomic distribution of SEs associated with HNRNPA0
Genome Browser

The strength of the tissue affected by the gene

Expression of HNRNPA0

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)