SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID:
Gene: HIST2H4A Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_111200133 chr1:149826363-149846157 Sample_02_1112 T lymphocyte THP-6 T-ALL 133 1 87 8 1 75 588 HIST2H2AA4,HIST2H4A,HIST2H3A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3C,HIST2H2AB,HIST2H2BE,HIST2H2BF,HIST2H2AC,HIST2H2BC
SE_02_055600683 chr1:149826412-149834226 Sample_02_0556 iPSCs BOFS hiPSC cl1 683 3 0 0 0 20 201 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_078200533 chr1:149828877-149842761 Sample_02_0782 Blood MEC1 533 1 0 0 0 67 570 HIST2H2AA4,HIST2H4A,HIST2H3A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3C,HIST2H2AB,HIST2H2BE,HIST2H2BF,HIST2H2AC,HIST2H2BC
SE_02_139500037 chr1:149828950-149835364 Sample_02_1395 Colon COLO320-DM_DMSO 37 1 0 0 0 20 259 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_055500547 chr1:149829072-149835992 Sample_02_0555 Other HAP1_WT 547 1 0 0 0 20 259 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_044800388 chr1:149829120-149834089 Sample_02_0448 Bone MNNG 388 1 0 0 0 20 188 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_108000787 chr1:149829142-149833702 Sample_02_1080 Muscle JR1 shCtrl 787 2 0 0 0 20 158 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_085600305 chr1:149829284-149835085 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 305 1 0 0 0 20 259 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_057000641 chr1:149829351-149841093 Sample_02_0570 Brain LN229_10_mM_glucose 641 3 0 0 0 36 381 HIST2H4A,HIST2H3A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3C,HIST2H2AB,HIST2H2BE,HIST2H2BF,HIST2H2AC,HIST2H2BC,HIST2H2AA4
SE_02_147800474 chr1:149829515-149836360 Sample_02_1478 Bone EW-3 474 1 0 0 0 20 259 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_148500974 chr1:149829522-149834996 Sample_02_1485 Bone SK-ES-1 974 1 0 0 0 20 259 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_068701015 chr1:149829711-149835104 Sample_02_0687 Lung NCI-H146_no infection 1015 1 0 0 0 20 259 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_148000852 chr1:149829838-149835078 Sample_02_1480 Bone MHH-ES-1 852 1 0 0 0 20 259 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_076500494 chr1:149829899-149835096 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 494 1 0 0 0 20 259 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_122000455 chr1:149829988-149833990 Sample_02_1220 Bone marrow JJN3 455 2 0 0 0 20 179 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_097600395 chr1:149830107-149834727 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 395 1 0 0 0 20 253 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_064000767 chr1:149830109-149833985 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 767 1 0 0 0 20 178 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_068300428 chr1:149830133-149835088 Sample_02_0683 Lung DMS114 428 1 0 0 0 20 259 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_062600289 chr1:149830136-149836522 Sample_02_0626 Mammary gland WS8_E2 289 1 0 0 0 20 259 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_062700301 chr1:149830166-149835907 Sample_02_0627 Mammary gland WS8_VEH 301 1 0 0 0 20 259 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_062500290 chr1:149830193-149836873 Sample_02_0625 Mammary gland WS8_4OHT 290 1 0 0 0 20 259 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BE,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_064200816 chr1:149830333-149834341 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 816 1 0 0 0 20 212 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_143201688 chr1:149830381-149834927 Sample_02_1432 Bone A673 STAG2 WT 1688 1 0 0 0 20 259 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_070100337 chr1:149830383-149834008 Sample_02_0701 Bone David_TC32 337 1 0 0 0 20 181 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_108600859 chr1:149830423-149834777 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 859 1 0 0 0 20 256 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_143301569 chr1:149830481-149834953 Sample_02_1433 Bone A673 STAG2 null 1569 1 0 0 0 20 259 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_077200255 chr1:149830494-149834224 Sample_02_0772 Prostate 22Rv1_delSite1_Clone11/12-F6 255 1 0 0 0 20 201 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_069400069 chr1:149830533-149834296 Sample_02_0694 Lung NCI-H82_no infection 69 1 0 0 0 19 205 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_097400418 chr1:149830578-149833760 Sample_02_0974 Brain H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells 418 1 0 0 0 19 162 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_068600385 chr1:149830600-149834085 Sample_02_0686 Lung NCI-H128_no infection 385 1 0 0 0 19 188 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
SE_02_118900660 chr1:149830613-149834839 Sample_02_1189 Brain GBM22 660 2 0 0 0 19 259 HIST2H4A,HIST2H4B,HIST2H3D,HIST2H2AA3,FCGR1A,HIST2H3A,HIST2H3C,HIST2H2BF,HIST2H2BC,HIST2H2AA4
Genomic distribution of SEs associated with HIST2H4A
Genome Browser

The strength of the tissue affected by the gene

Expression of HIST2H4A

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)