SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000099822
Gene: HCN2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:589881-617159 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_027700204 chr19:550543-611983 Sample_02_0277 Retina FW18 204 6 2692 259 4 149 2555 BSG,HCN2,POLRMT,C19ORF20,FGF22,CDC34,GZMM
SE_02_084100495 chr19:550913-611641 Sample_02_0841 Blood THP-1_untr 495 14 2661 257 4 149 2555 BSG,HCN2,POLRMT,GZMM,CDC34,FGF22,TPGS1
SE_02_144500755 chr19:555566-614754 Sample_02_1445 Adipose SW872_TAZ4SA 755 14 2660 266 4 166 2874 BSG,HCN2,POLRMT,GZMM,CDC34,FGF22,RNF126,TPGS1
SE_02_143300245 chr19:555680-630801 Sample_02_1433 Bone A673 STAG2 null 245 20 3522 346 4 289 5304 BSG,HCN2,POLRMT,GZMM,CDC34,FGF22,RNF126,TPGS1,FSTL3
SE_02_108200368 chr19:572557-630177 Sample_02_1082 Retina retina 368 18 2815 284 4 287 5079 BSG,HCN2,POLRMT,GZMM,CDC34,FGF22,RNF126,FSTL3,PALM,SHC2,ODF3L2
SE_02_108300539 chr19:572561-611742 Sample_02_1083 Macula macula 539 15 1810 188 4 147 2365 BSG,HCN2,POLRMT,GZMM,CDC34,FGF22
SE_02_104300851 chr19:574004-612020 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 851 19 1763 184 4 146 2264 BSG,HCN2,POLRMT,GZMM,CDC34,FGF22
SE_02_120500456 chr19:574257-631035 Sample_02_1205 Brain NB3 456 22 2779 285 4 286 5013 BSG,HCN2,POLRMT,GZMM,CDC34,FGF22,RNF126,FSTL3
SE_02_117300207 chr19:574308-630294 Sample_02_1173 Brain GBM01 207 33 2749 277 4 286 5005 BSG,HCN2,POLRMT,GZMM,CDC34,FGF22,RNF126,FSTL3
SE_02_015800439 chr19:574448-591581 Sample_02_0158 Brain U87_EGFRvIII_erlotinib 439 3 778 122 4 79 1612 BSG,HCN2,POLRMT,CDC34,FGF22,GZMM
SE_02_119801039 chr19:574552-592116 Sample_02_1198 Brain GBM34 1039 7 788 122 4 79 1612 BSG,HCN2,POLRMT,GZMM,CDC34,FGF22
SE_02_121300626 chr19:574552-624473 Sample_02_1213 Brain GBM31 626 14 2480 252 4 272 4567 BSG,HCN2,POLRMT,GZMM,CDC34,FGF22,RNF126
SE_02_120400496 chr19:574571-624855 Sample_02_1204 Brain NB2 496 11 2500 254 4 272 4653 BSG,HCN2,POLRMT,GZMM,CDC34,FGF22,RNF126
SE_02_010600061 chr19:575036-630552 Sample_02_0106 Skin NHEK_M 61 12 2728 274 4 286 5013 BSG,HCN2,POLRMT,RNF126,FSTL3,FGF22,CDC34,GZMM
SE_02_007300736 chr19:579282-583489 Sample_02_0073 Other 90-8TL_DMSO 736 4 204 37 1 10 847 BSG,CDC34,HCN2,GZMM
SE_02_141600597 chr19:581170-589795 Sample_02_1416 Brain SF9402 597 1 419 65 2 18 561 BSG,POLRMT,GZMM,CDC34,HCN2
SE_02_021601382 chr19:585486-598232 Sample_02_0216 Skin NHEK_scramble 1382 2 505 48 1 54 377 HCN2,POLRMT,FGF22,BSG,GZMM
SE_02_124400397 chr19:596452-611648 Sample_02_1244 Brain KCNR_ATRA 397 3 725 35 0 67 652 HCN2,POLRMT,BSG,FGF22
SE_02_101200142 chr19:602918-610678 Sample_02_1012 Brain Lateral temporal lobe_8T_AD 142 2 365 25 0 61 652 HCN2,POLRMT,BSG,FGF22
SE_02_110500933 chr19:606932-612345 Sample_02_1105 Brain NBL-S 933 1 324 26 0 38 284 HCN2,POLRMT,BSG,FGF22
SE_02_141600947 chr19:607937-614807 Sample_02_1416 Brain SF9402 947 1 404 34 0 51 564 HCN2,POLRMT,RNF126,BSG,FGF22
SE_02_126900919 chr19:608665-612743 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 919 1 261 17 0 15 134 HCN2,POLRMT,BSG,FGF22
Genomic distribution of SEs associated with HCN2
Genome Browser

The strength of the tissue affected by the gene

Expression of HCN2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)