Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000166123 |
| Gene: | GPT2 | Gene type: | protein_coding |
| Strand: | + | External links: |
|
| Genomic region: | chr16:46884362-46931289 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_104600594 | chr16:46841182-46930439 |
Sample_02_1046 | Peripheral blood | CD4+ cells_CTCL1145 | 594 | 36 | 2013 | 69 | 1 | 129 | 1681 | GPT2,C16ORF87,DNAJA2 |
| SE_02_032200248 | chr16:46852932-46895938 |
Sample_02_0322 | Colon | Caco-2 | 248 | 4 | 896 | 34 | 1 | 52 | 360 | GPT2,C16ORF87 |
| SE_01_008500575 | chr16:46853573-46924480 |
Sample_01_0085 | Stomach | stomach | 575 | 11 | 1574 | 51 | 1 | 119 | 1204 | GPT2,C16ORF87,DNAJA2 |
| SE_00_004100461 | chr16:46854100-46898323 |
Sample_00_0041 | Stomach | stomach_3y | 461 | 9 | 931 | 34 | 1 | 62 | 467 | GPT2,C16ORF87 |
| SE_02_129700106 | chr16:46854145-46930899 |
Sample_02_1297 | Lung | lung | 106 | 35 | 1716 | 57 | 1 | 133 | 1728 | GPT2,C16ORF87,DNAJA2 |
| SE_01_010700914 | chr16:46854182-46904505 |
Sample_01_0107 | Esophagus | esophagus squamous epithelium | 914 | 17 | 1101 | 41 | 1 | 65 | 571 | GPT2,C16ORF87 |
| SE_02_012400143 | chr16:46857017-46887205 |
Sample_02_0124 | Embryo | Embryonic-stem-cells_Naive | 143 | 4 | 634 | 20 | 1 | 32 | 360 | GPT2,C16ORF87 |
| SE_02_032500168 | chr16:46857174-46898188 |
Sample_02_0325 | Liver | hepatocytes_d1 | 168 | 6 | 865 | 28 | 1 | 50 | 467 | GPT2,C16ORF87 |
| SE_00_001100580 | chr16:46857187-46904410 |
Sample_00_0011 | Esophagus | esophagus | 580 | 10 | 1040 | 35 | 1 | 53 | 571 | GPT2,C16ORF87 |
| SE_02_080800458 | chr16:46859277-46907784 |
Sample_02_0808 | Ovary | RMG1_ARID1A KO | 458 | 29 | 1082 | 36 | 1 | 54 | 665 | GPT2,C16ORF87 |
| SE_02_071900786 | chr16:46859367-46865871 |
Sample_02_0719 | Pancreas | SUIT2_TP63dN_DOX | 786 | 3 | 131 | 2 | 0 | 0 | 0 | GPT2,C16ORF87 |
| SE_02_082600799 | chr16:46859626-46891988 |
Sample_02_0826 | Stomach | gastric tumor | 799 | 16 | 671 | 24 | 1 | 32 | 360 | GPT2,C16ORF87 |
| SE_01_003800132 | chr16:46862713-46900009 |
Sample_01_0038 | Liver | HepG2 | 132 | 5 | 799 | 27 | 1 | 49 | 467 | GPT2,C16ORF87,C16orf87 |
| SE_01_008200827 | chr16:46862817-46900173 |
Sample_01_0082 | Right lobe of liver | right-lobe-of-liver | 827 | 11 | 804 | 27 | 1 | 49 | 467 | GPT2,C16ORF87 |
| SE_02_032600348 | chr16:46863074-46897904 |
Sample_02_0326 | Liver | hepatocytes_d3 | 348 | 5 | 739 | 25 | 1 | 48 | 459 | GPT2,C16ORF87 |
| SE_02_047600284 | chr16:46863110-46887457 |
Sample_02_0476 | iPSCs | hiPSC derived hepatocyte-like cells | 284 | 10 | 519 | 17 | 1 | 30 | 360 | GPT2,C16ORF87 |
| SE_02_032700388 | chr16:46863155-46897186 |
Sample_02_0327 | Liver | hepatocytes_d6 | 388 | 6 | 719 | 25 | 1 | 37 | 360 | GPT2,C16ORF87 |
| SE_00_001400208 | chr16:46863218-46898458 |
Sample_00_0014 | Heart left ventricle | heart-left-ventricle | 208 | 6 | 757 | 25 | 1 | 48 | 467 | GPT2,C16ORF87 |
| SE_02_101701574 | chr16:46870839-46932969 |
Sample_02_1017 | Embryo | H9_Mesendoderm 24h_Hydroxyurea | 1574 | 14 | 1431 | 45 | 1 | 119 | 1789 | GPT2,C16ORF87,DNAJA2 |
| SE_01_010100114 | chr16:46875370-46921695 |
Sample_01_0101 | Pancreas | pancreas_54y | 114 | 19 | 1063 | 37 | 1 | 91 | 964 | GPT2,C16ORF87 |
| SE_01_010300299 | chr16:46875804-46899805 |
Sample_01_0103 | Pancreas | pancreas_37y | 299 | 7 | 526 | 22 | 1 | 48 | 467 | GPT2,C16ORF87 |
| SE_01_007100351 | chr16:46875852-46898192 |
Sample_01_0071 | Pancreas | body-of-pancreas | 351 | 4 | 484 | 20 | 1 | 48 | 467 | GPT2,C16ORF87 |
| SE_00_005800123 | chr16:46876039-46921756 |
Sample_00_0058 | Stomach | stomach 34y | 123 | 21 | 1050 | 37 | 1 | 91 | 964 | GPT2,C16ORF87 |
| SE_02_004001046 | chr16:46876116-46929925 |
Sample_02_0040 | Embryo | PFG | 1046 | 6 | 1248 | 41 | 1 | 113 | 1572 | GPT2,C16ORF87,DNAJA2 |
| SE_02_075300741 | chr16:46876528-46909821 |
Sample_02_0753 | Embryo | ES-derived progenitors_FG type | 741 | 5 | 768 | 32 | 1 | 58 | 711 | GPT2,C16ORF87 |
| SE_00_004200526 | chr16:46879930-46888484 |
Sample_00_0042 | Stomach | stomach_30y | 526 | 1 | 178 | 8 | 1 | 31 | 360 | GPT2,C16ORF87 |
| SE_02_004800917 | chr16:46880803-46897109 |
Sample_02_0048 | Embryo endodermal | CyT49_HE | 917 | 3 | 338 | 13 | 1 | 36 | 360 | GPT2,C16ORF87 |
| SE_01_008800849 | chr16:46881328-46924670 |
Sample_01_0088 | Tibial nerve | tibial-nerve | 849 | 8 | 1000 | 30 | 1 | 104 | 1250 | GPT2,DNAJA2 |
| SE_02_001500338 | chr16:46882025-46900018 |
Sample_02_0015 | Liver | HepG2_shNS | 338 | 4 | 400 | 15 | 1 | 48 | 467 | GPT2 |
| SE_02_119600610 | chr16:46882216-46929782 |
Sample_02_1196 | Brain | GBM32 | 610 | 19 | 1112 | 34 | 1 | 112 | 1537 | GPT2,DNAJA2 |
| SE_02_120500897 | chr16:46882231-46920128 |
Sample_02_1205 | Brain | NB3 | 897 | 16 | 883 | 29 | 1 | 90 | 964 | GPT2 |
| SE_02_121300560 | chr16:46882246-46930342 |
Sample_02_1213 | Brain | GBM31 | 560 | 16 | 1130 | 36 | 1 | 112 | 1658 | GPT2,DNAJA2 |
| SE_02_078100444 | chr16:46882290-46930439 |
Sample_02_0781 | Lymphoma | Pfeiffer_DMSO | 444 | 18 | 1132 | 36 | 1 | 112 | 1681 | GPT2,DNAJA2 |
| SE_02_046500095 | chr16:46882299-46930388 |
Sample_02_0465 | Adipose | subcutaneous adipocytes | 95 | 33 | 1131 | 36 | 1 | 112 | 1672 | GPT2,DNAJA2 |
| SE_02_077900155 | chr16:46882389-46931791 |
Sample_02_0779 | Lymphoma | U2932 | 155 | 21 | 1163 | 36 | 1 | 117 | 1789 | GPT2,DNAJA2 |
| SE_02_119200448 | chr16:46883006-46920534 |
Sample_02_1192 | Brain | GBM26 | 448 | 12 | 878 | 29 | 0 | 86 | 964 | GPT2 |
| SE_02_036800337 | chr16:46883076-46929641 |
Sample_02_0368 | Skeletal muscle | NS134 | 337 | 8 | 1090 | 33 | 0 | 108 | 1507 | GPT2,DNAJA2 |
| SE_02_120400525 | chr16:46883150-46929740 |
Sample_02_1204 | Brain | NB2 | 525 | 14 | 1089 | 33 | 0 | 108 | 1530 | GPT2,DNAJA2 |
| SE_01_009700731 | chr16:46883266-46929811 |
Sample_01_0097 | Gastrocnemius medialis | gastrocnemius medialis_53y | 731 | 8 | 1088 | 33 | 0 | 108 | 1541 | GPT2,DNAJA2 |
| SE_02_117300539 | chr16:46883479-46930378 |
Sample_02_1173 | Brain | GBM01 | 539 | 21 | 1101 | 35 | 0 | 109 | 1667 | GPT2,DNAJA2 |
| SE_02_118100482 | chr16:46884410-46930122 |
Sample_02_1181 | Brain | GBM10 | 482 | 13 | 1076 | 34 | 0 | 106 | 1541 | GPT2,DNAJA2 |
| SE_02_036700582 | chr16:46884535-46928555 |
Sample_02_0367 | Skeletal muscle | NS129 | 582 | 7 | 1026 | 32 | 0 | 100 | 1258 | GPT2,DNAJA2 |
| SE_02_120300750 | chr16:46886900-46930434 |
Sample_02_1203 | Brain | NB1 | 750 | 15 | 1028 | 32 | 0 | 84 | 1320 | GPT2,DNAJA2 |
| SE_02_101300469 | chr16:46887203-46919193 |
Sample_02_1013 | Brain | Lateral temporal lobe_6T_AD | 469 | 12 | 738 | 24 | 0 | 59 | 604 | GPT2 |
| SE_02_077501293 | chr16:46893176-46931767 |
Sample_02_0775 | Pancreas | EndoC-BH1_SE | 1293 | 11 | 933 | 24 | 0 | 87 | 1429 | GPT2,DNAJA2 |
| SE_02_021600586 | chr16:46893451-46927175 |
Sample_02_0216 | Skin | NHEK_scramble | 586 | 6 | 802 | 20 | 0 | 76 | 975 | GPT2,DNAJA2 |
| SE_02_129600324 | chr16:46895400-46932395 |
Sample_02_1296 | Perigastric lymph node | Perigastric lymph node | 324 | 17 | 901 | 24 | 0 | 82 | 1429 | GPT2,DNAJA2 |
| SE_02_115700447 | chr16:46907937-46930114 |
Sample_02_1157 | Peripheral blood | Day6 Plasmablast CD23- memory B cell_G9A-Inhibited | 447 | 10 | 508 | 13 | 0 | 59 | 941 | GPT2,DNAJA2 |
| SE_01_005300442 | chr16:46909212-46932696 |
Sample_01_0053 | Haematopoietic and lymphoid tissue | OCI-LY1 | 442 | 2 | 549 | 12 | 0 | 64 | 1124 | GPT2,DNAJA2 |
| SE_02_004500844 | chr16:46917232-46920868 |
Sample_02_0045 | Embryo endodermal | CyT49_ES_D7 | 844 | 1 | 93 | 3 | 0 | 14 | 117 | GPT2 |
Genomic distribution of SEs associated with GPT2