SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000159592
Gene: GPBP1L1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:45627304-45688113 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_009400875 chr1:45652021-45689072 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 875 12 951 103 0 89 560 TMEM69,GPBP1L1,RPS15AP10,CCDC17
SE_02_088601672 chr1:45658555-45704708 Sample_02_0886 Skin foreskin_ p63KLF4 1672 9 1143 123 0 91 810 TMEM69,IPP,GPBP1L1,RPS15AP10,CCDC17
SE_02_122900625 chr1:45663910-45694085 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 625 11 761 83 0 56 419 TMEM69,GPBP1L1,RPS15AP10,CCDC17
SE_02_143201412 chr1:45664292-45691598 Sample_02_1432 Bone A673 STAG2 WT 1412 4 692 74 0 47 302 TMEM69,GPBP1L1,RPS15AP10,CCDC17
SE_02_098900967 chr1:45664845-45696609 Sample_02_0989 Kidney kidney cortex_WT 967 12 795 78 0 59 463 TMEM69,GPBP1L1,IPP,RPS15AP10,CCDC17
SE_02_134000609 chr1:45666660-45692871 Sample_02_1340 Blood acute myeloid leukemia 609 11 654 67 0 47 302 TMEM69,GPBP1L1,RPS15AP10,CCDC17
SE_02_091301289 chr1:45666687-45688855 Sample_02_0913 Heart left ventricle_DCM_LV1304 1289 12 568 56 0 46 266 TMEM69,GPBP1L1,RPS15AP10,CCDC17
SE_02_089801190 chr1:45666694-45688743 Sample_02_0898 Heart left ventricle_LV1356 1190 13 566 56 0 46 266 TMEM69,GPBP1L1,RPS15AP10,CCDC17
SE_02_090401255 chr1:45666731-45688742 Sample_02_0904 Heart left ventricle_DCM_LV1028 1255 8 566 56 0 46 266 TMEM69,GPBP1L1,RPS15AP10,CCDC17
SE_02_091001147 chr1:45666815-45688787 Sample_02_0910 Heart left ventricle_DCM_LV1275 1147 9 563 54 0 46 266 TMEM69,GPBP1L1,RPS15AP10,CCDC17
SE_02_089201339 chr1:45673458-45688778 Sample_02_0892 Heart left ventricle_LV1215 1339 7 370 28 0 46 266 TMEM69,GPBP1L1,RPS15AP10,CCDC17
SE_02_090701303 chr1:45673508-45688880 Sample_02_0907 Heart left ventricle_DCM_LV1223 1303 8 371 29 0 46 266 TMEM69,GPBP1L1,RPS15AP10,CCDC17
SE_02_126900895 chr1:45673549-45688896 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 895 3 370 29 0 46 266 TMEM69,GPBP1L1,RPS15AP10,CCDC17
SE_02_068500430 chr1:45673671-45689145 Sample_02_0685 Lung NCI-H1048_no infection 430 5 369 28 0 46 266 TMEM69,GPBP1L1,RPS15AP10,CCDC17
SE_02_103300403 chr1:45673728-45689816 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 403 3 379 28 0 46 266 TMEM69,GPBP1L1,RPS15AP10,CCDC17
SE_02_032601016 chr1:45673803-45689266 Sample_02_0326 Liver hepatocytes_d3 1016 4 364 28 0 46 266 TMEM69,GPBP1L1,RPS15AP10,CCDC17
SE_02_088901438 chr1:45673821-45688895 Sample_02_0889 Heart left ventricle_LV1183 1438 5 359 28 0 46 266 TMEM69,GPBP1L1,RPS15AP10,CCDC17
SE_01_009500797 chr1:45673831-45688675 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 797 3 355 27 0 46 266 TMEM69,GPBP1L1,RPS15AP10,CCDC17
SE_02_090601240 chr1:45673840-45688732 Sample_02_0906 Heart left ventricle_DCM_LV1072 1240 5 356 27 0 46 266 TMEM69,GPBP1L1,RPS15AP10,CCDC17
SE_02_146800667 chr1:45674362-45694780 Sample_02_1468 Blood HUDEP-2_WT 667 5 467 40 0 57 463 TMEM69,GPBP1L1,IPP,RPS15AP10
SE_02_138100690 chr1:45674576-45695477 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 690 5 484 40 0 57 463 TMEM69,GPBP1L1,IPP,RPS15AP10
SE_02_143301496 chr1:45675612-45689609 Sample_02_1433 Bone A673 STAG2 null 1496 5 326 27 0 46 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_101701974 chr1:45676218-45694690 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1974 6 436 40 0 57 462 TMEM69,GPBP1L1,IPP,RPS15AP10
SE_02_074600764 chr1:45676576-45693573 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 764 3 397 36 0 48 352 TMEM69,GPBP1L1,RPS15AP10
SE_02_068300258 chr1:45676825-45689705 Sample_02_0683 Lung DMS114 258 4 302 25 0 46 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_148000663 chr1:45677110-45689699 Sample_02_1480 Bone MHH-ES-1 663 6 296 25 0 46 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_058000327 chr1:45677946-45689805 Sample_02_0580 Blood HEL_sgSIK3e4 327 6 284 23 0 46 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_057900293 chr1:45677982-45690704 Sample_02_0579 Blood HEL_sgNeg2 293 9 300 26 0 46 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_091801230 chr1:45677992-45688754 Sample_02_0918 Heart left ventricle_DCM_LV1437 1230 3 263 22 0 46 266 TMEM69,GPBP1L1,RPS15AP10
SE_01_008501355 chr1:45678620-45689338 Sample_01_0085 Stomach stomach 1355 2 260 22 0 46 266 TMEM69,GPBP1L1,RPS15AP10
SE_00_000301539 chr1:45678765-45688866 Sample_00_0003 Adrenal gland adrenal-gland_97d 1539 2 253 21 0 46 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_057600347 chr1:45678915-45690574 Sample_02_0576 Blood HEL_sgLKB1e2 347 6 281 23 0 46 266 TMEM69,GPBP1L1,RPS15AP10
SE_01_010700977 chr1:45678928-45689293 Sample_01_0107 Esophagus esophagus squamous epithelium 977 2 254 22 0 46 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_103400569 chr1:45678991-45689512 Sample_02_1034 Blood AML cell 569 2 255 22 0 46 266 TMEM69,GPBP1L1,RPS15AP10
SE_00_004101044 chr1:45679016-45688909 Sample_00_0041 Stomach stomach_3y 1044 2 246 22 0 46 266 TMEM69,GPBP1L1,RPS15AP10
SE_01_010101071 chr1:45679033-45688758 Sample_01_0101 Pancreas pancreas_54y 1071 2 243 21 0 46 266 TMEM69,GPBP1L1,RPS15AP10
SE_00_005500711 chr1:45679261-45688723 Sample_00_0055 Spleen spleen 34y 711 2 240 20 0 46 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_085400768 chr1:45679363-45689165 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 768 2 245 21 0 45 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_006700689 chr1:45679634-45689638 Sample_02_0067 Embryo AzH-G2/M 689 2 249 20 0 45 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_132200882 chr1:45679804-45689353 Sample_02_1322 Connective Tissue HT1080_WT 882 2 240 20 0 45 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_061700473 chr1:45679892-45689511 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 473 3 242 20 0 45 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_051100671 chr1:45680339-45688792 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 671 2 219 19 0 45 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_006400518 chr1:45682208-45689123 Sample_02_0064 Embryo DN-Early_G1 518 2 174 15 0 45 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_146000826 chr1:45682288-45689738 Sample_02_1460 Blood Mutz-3 826 2 185 15 0 45 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_068800172 chr1:45682720-45689362 Sample_02_0688 Lung NCI-H211_no infection 172 2 167 14 0 45 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_088400816 chr1:45683766-45689698 Sample_02_0884 Colon LoVo 816 1 161 12 0 44 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_012500735 chr1:45684205-45689336 Sample_02_0125 Embryo Embryonic-stem-cells_Primed 735 1 138 11 0 44 266 TMEM69,GPBP1L1,RPS15AP10
SE_04_000101120 chr1:45684278-45690049 Sample_04_0001 Blood heat shocked K562 1120 1 153 11 0 44 266 TMEM69,GPBP1L1,RPS15AP10
SE_04_000200646 chr1:45684330-45690426 Sample_04_0002 Blood cold shocked K562 646 1 158 12 0 44 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_128001177 chr1:45684345-45689767 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1177 1 144 11 0 44 266 TMEM69,GPBP1L1,RPS15AP10
SE_01_004100418 chr1:45684385-45689545 Sample_01_0041 Skin keratinocyte 418 1 137 11 0 44 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_076000778 chr1:45684519-45689385 Sample_02_0760 Ovary BIN-67_SMARCA4 778 1 134 11 0 44 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_057500304 chr1:45684542-45689710 Sample_02_0575 Blood MOLM13_sgLKB1e2 304 1 141 11 0 44 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_057800281 chr1:45684563-45689620 Sample_02_0578 Blood MOLM-13_sgSIK3e4 281 1 137 11 0 44 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_054500530 chr1:45684571-45689661 Sample_02_0545 Bone marrow K562 WT 530 1 139 11 0 44 266 TMEM69,GPBP1L1,RPS15AP10
SE_00_003600753 chr1:45684574-45689115 Sample_00_0036 Small intestine small-intestine_108days 753 1 129 11 0 44 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_064500448 chr1:45684582-45689268 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 448 1 131 11 0 44 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_057700435 chr1:45684624-45689591 Sample_02_0577 Blood MOLM13_empty 435 1 132 11 0 44 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_064600319 chr1:45684637-45689261 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 319 1 128 11 0 44 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_058100425 chr1:45684653-45689713 Sample_02_0581 Blood MOLM13_empty_HG 425 1 137 11 0 44 266 TMEM69,GPBP1L1,RPS15AP10
SE_00_002000965 chr1:45684697-45689115 Sample_00_0020 Large intestine large-intestine_108d 965 1 125 11 0 44 266 TMEM69,GPBP1L1,RPS15AP10
SE_00_000800657 chr1:45684732-45689837 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 657 1 138 10 0 43 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_058200450 chr1:45684775-45689799 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 450 1 135 9 0 42 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_057400282 chr1:45684800-45689829 Sample_02_0574 Blood MOLM-13_sgNeg2 282 1 135 9 0 42 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_065000295 chr1:45684821-45689136 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 295 1 121 7 0 42 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_081900997 chr1:45684875-45689197 Sample_02_0819 Ovary Mucinous ovarian cancer 997 1 119 7 0 42 266 TMEM69,GPBP1L1,RPS15AP10
SE_00_001800354 chr1:45684909-45689104 Sample_00_0018 Dermal fibroblasts iPS-18axian 354 1 117 7 0 42 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_113000687 chr1:45684944-45689714 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 687 1 128 7 0 42 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_033700578 chr1:45685006-45689268 Sample_02_0337 Haematopoietic and lymphoid tissue MV411_untreat 578 1 117 7 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_101800358 chr1:45685016-45688783 Sample_02_1018 Erythroblast CD34+ Hematopoietic stem/progenitor cells_12 days 358 1 107 5 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_035500320 chr1:45685035-45689717 Sample_02_0355 Colon HCT15 320 1 123 6 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_01_003701261 chr1:45685037-45689039 Sample_01_0037 Liver hepatocyte 1261 1 110 6 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_113601001 chr1:45685070-45689372 Sample_02_1136 Bone U2OS-anaphase/telophase 1001 1 115 6 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_103700578 chr1:45685132-45689119 Sample_02_1037 Pharynx FaDu Control 578 1 111 6 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_032800479 chr1:45685149-45689517 Sample_02_0328 Embryo H9_naive 479 1 115 5 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_081700756 chr1:45685150-45689377 Sample_02_0817 Ovary Epithelial ovarian cancer 756 1 112 5 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_023600532 chr1:45685158-45689050 Sample_02_0236 Colon V206 532 1 107 5 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_00_004300369 chr1:45685182-45689110 Sample_00_0043 Stomach stomach_96d 369 1 108 5 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_00_002700621 chr1:45685183-45689120 Sample_00_0027 Blood natural-killer-cell 621 1 108 5 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_00_002500444 chr1:45685202-45689092 Sample_00_0025 Muscle of leg muscle-of-leg 444 1 107 5 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_143000227 chr1:45685250-45689128 Sample_02_1430 Blood Kasumi-3_mock-infected 227 1 107 5 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_109400181 chr1:45685281-45688904 Sample_02_1094 Embryo H9_0Dox 181 1 101 5 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_00_004500597 chr1:45685297-45688941 Sample_00_0045 Thymus thymus 597 1 100 5 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_050100505 chr1:45685334-45689185 Sample_02_0501 Blood HL-60_CTRL 505 1 102 5 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_00_003900968 chr1:45685356-45689054 Sample_00_0039 Spleen spleen_3y 968 1 99 5 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_00_004000853 chr1:45685360-45688845 Sample_00_0040 Spleen spleen_30y 853 1 97 4 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_00_001101128 chr1:45685363-45688964 Sample_00_0011 Esophagus esophagus 1128 1 98 5 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_082000669 chr1:45685387-45689284 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 669 1 101 5 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_00_000900761 chr1:45685390-45689230 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 761 1 101 5 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_004600446 chr1:45685399-45689001 Sample_02_0046 Embryo endodermal CyT49_ES_D10 446 1 97 5 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_00_002600448 chr1:45685421-45688917 Sample_00_0026 Muscle of trunk muscle-of-trunk 448 1 95 5 0 40 266 TMEM69,GPBP1L1,RPS15AP10
SE_02_037300411 chr1:45685441-45689101 Sample_02_0373 Skeletal muscle RMS206 411 1 98 5 0 40 264 TMEM69,GPBP1L1,RPS15AP10
SE_02_134700322 chr1:45685448-45688861 Sample_02_1347 Leukophereses leukophereses_p401 322 1 94 4 0 40 264 TMEM69,GPBP1L1,RPS15AP10
SE_02_081601753 chr1:45685449-45689100 Sample_02_0816 Ovary Clear cell ovarian cancer 1753 1 98 5 0 40 264 TMEM69,GPBP1L1,RPS15AP10
SE_00_004700384 chr1:45685458-45689296 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 384 1 100 5 0 40 264 TMEM69,GPBP1L1,RPS15AP10
SE_02_074500627 chr1:45685461-45688667 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 627 1 90 4 0 39 264 TMEM69,GPBP1L1,RPS15AP10
SE_02_014800632 chr1:45685464-45688914 Sample_02_0148 Blood CD8_T_cells 632 1 94 5 0 39 264 TMEM69,GPBP1L1,RPS15AP10
SE_02_097400416 chr1:45685469-45688822 Sample_02_0974 Brain H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells 416 1 92 4 0 39 264 TMEM69,GPBP1L1,RPS15AP10
SE_02_046100709 chr1:45685478-45689017 Sample_02_0461 Blood MV-4-11-B cells 709 1 95 5 0 38 263 TMEM69,GPBP1L1,RPS15AP10
SE_02_109500775 chr1:45685493-45689118 Sample_02_1095 Blood CD34 Erythroid cells_Don002 775 1 97 5 0 38 263 TMEM69,GPBP1L1,RPS15AP10
SE_02_001700803 chr1:45685504-45688908 Sample_02_0017 Embryo H9_ESC 803 1 94 5 0 38 263 TMEM69,GPBP1L1,RPS15AP10
SE_02_004500739 chr1:45685514-45688855 Sample_02_0045 Embryo endodermal CyT49_ES_D7 739 1 93 4 0 38 263 TMEM69,GPBP1L1,RPS15AP10
SE_02_137200324 chr1:45685519-45688989 Sample_02_1372 Pancreas PSN1-untreated 324 1 95 5 0 38 261 TMEM69,GPBP1L1,RPS15AP10
SE_02_136300433 chr1:45685537-45688739 Sample_02_1363 Blood Hudep2 433 1 91 4 0 34 257 TMEM69,GPBP1L1,RPS15AP10
SE_02_048900398 chr1:45685736-45688841 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 398 1 87 4 0 32 234 TMEM69,GPBP1L1,RPS15AP10
Genomic distribution of SEs associated with GPBP1L1
Genome Browser

The strength of the tissue affected by the gene

Expression of GPBP1L1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)