SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000167083
Gene: GNGT2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:49202791-49210574 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_119500511 chr17:49181070-49225076 Sample_02_1195 Brain GBM29 511 14 1175 121 2 174 1968 GNGT2,ABI3,PHOSPHO1,B4GALNT2,FLJ40194
SE_02_045400638 chr17:49188945-49227098 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 638 16 1027 98 2 187 2128 GNGT2,ABI3,PHOSPHO1,FLJ40194
SE_02_080800297 chr17:49189523-49202606 Sample_02_0808 Ovary RMG1_ARID1A KO 297 7 369 44 0 21 94 FLJ40194,GNGT2,ABI3,PHOSPHO1
SE_02_020700487 chr17:49189881-49198416 Sample_02_0207 Stomach FU97 487 5 244 28 0 17 94 PHOSPHO1,GNGT2,FLJ40194,ABI3
SE_02_026800488 chr17:49190097-49199772 Sample_02_0268 Kidney A-498 488 5 270 30 0 18 94 PHOSPHO1,GNGT2,FLJ40194,ABI3
SE_02_067100438 chr17:49190206-49194709 Sample_02_0671 Mammary gland breast cancer_DSG 438 2 133 14 0 13 94 GNGT2,ABI3,PHOSPHO1
SE_02_001101081 chr17:49190689-49199142 Sample_02_0011 Kidney A-498_wtVHL 1081 3 233 29 0 18 94 PHOSPHO1,GNGT2,FLJ40194,ABI3
SE_02_067000182 chr17:49190753-49194066 Sample_02_0670 Mammary gland breast cancer FA 182 2 105 12 0 12 94 GNGT2,ABI3,PHOSPHO1
SE_02_001000972 chr17:49190797-49199160 Sample_02_0010 Kidney A-498_emptyvector 972 2 231 29 0 18 94 PHOSPHO1,GNGT2,FLJ40194,ABI3
SE_02_069400224 chr17:49190849-49201996 Sample_02_0694 Lung NCI-H82_no infection 224 6 316 42 0 19 94 FLJ40194,GNGT2,ABI3,PHOSPHO1,ZNF652
SE_02_142900715 chr17:49190893-49220100 Sample_02_1429 Blood GM12878_WT 715 5 799 87 2 115 1208 GNGT2,ABI3,FLJ40194,PHOSPHO1,ZNF652,B4GALNT2,HOXB4
SE_02_143000787 chr17:49190917-49193813 Sample_02_1430 Blood Kasumi-3_mock-infected 787 1 94 11 0 9 94 GNGT2,ABI3,PHOSPHO1
SE_02_081100179 chr17:49190941-49223966 Sample_02_0811 Thyroid BCPAP 179 12 910 94 2 134 1741 GNGT2,ABI3,PHOSPHO1,FLJ40194
SE_02_130400576 chr17:49190945-49219818 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 576 10 793 87 2 111 1123 GNGT2,ABI3,FLJ40194,PHOSPHO1
SE_02_095001014 chr17:49190956-49217504 Sample_02_0950 Umbilical vein HUVEC_WT 1014 12 722 85 2 96 847 GNGT2,ABI3,FLJ40194,PHOSPHO1
SE_02_139000637 chr17:49191074-49193542 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 637 2 87 8 0 9 94 GNGT2,ABI3,PHOSPHO1
SE_02_007200312 chr17:49191404-49202276 Sample_02_0072 Lung NCI-H82_DMSO 312 3 312 39 0 19 94 PHOSPHO1,GNGT2,FLJ40194,ABI3
SE_02_106500453 chr17:49191462-49218187 Sample_02_1065 Lymphoma KARPAS-422_DMSO_8d 453 5 743 82 2 101 990 GNGT2,ABI3,FLJ40194,PHOSPHO1
SE_02_143201667 chr17:49191495-49194397 Sample_02_1432 Bone A673 STAG2 WT 1667 1 98 10 0 13 94 GNGT2,ABI3,PHOSPHO1
SE_02_143301424 chr17:49191542-49194388 Sample_02_1433 Bone A673 STAG2 null 1424 1 98 10 0 13 94 GNGT2,ABI3,PHOSPHO1
SE_02_157300911 chr17:49191577-49219401 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 911 13 772 84 2 106 1009 GNGT2,ABI3,FLJ40194,PHOSPHO1
SE_02_131700104 chr17:49191584-49223526 Sample_02_1317 Brain hMGLs_SORL1-KO 104 7 892 90 2 132 1641 GNGT2,ABI3,PHOSPHO1,FLJ40194
SE_02_131800135 chr17:49191589-49225932 Sample_02_1318 Brain hMGLs_SORL1-A528T 135 8 933 91 2 182 2029 GNGT2,ABI3,PHOSPHO1,FLJ40194
SE_02_058500860 chr17:49191712-49217477 Sample_02_0585 Umbilical vein HUVEC 0hour 860 8 708 81 2 95 847 GNGT2,ABI3,FLJ40194,PHOSPHO1
SE_02_083100841 chr17:49191716-49218048 Sample_02_0831 Umblical vein HUVECs_TNF0min 841 11 734 81 2 100 974 GNGT2,ABI3,FLJ40194,PHOSPHO1
SE_02_147100937 chr17:49191798-49217714 Sample_02_1471 Blood Outgrowth Endothelia BOEC 937 4 717 81 2 99 895 GNGT2,ABI3,FLJ40194,PHOSPHO1
SE_02_083200500 chr17:49191803-49218055 Sample_02_0832 Umblical vein HUVECs_TNF30min 500 10 731 81 2 100 977 GNGT2,ABI3,FLJ40194,PHOSPHO1
SE_02_151800426 chr17:49191918-49217285 Sample_02_1518 Umbilical vein HUVEC_Scr 426 6 699 81 2 94 847 GNGT2,ABI3,FLJ40194,PHOSPHO1
SE_02_151900404 chr17:49191946-49217928 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 404 11 723 80 2 100 948 GNGT2,ABI3,FLJ40194,PHOSPHO1
SE_02_152000395 chr17:49192025-49214751 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 395 6 623 74 2 88 739 GNGT2,ABI3,FLJ40194,PHOSPHO1
SE_02_104701334 chr17:49206919-49225213 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1334 9 495 36 2 148 1757 GNGT2,ABI3,PHOSPHO1,FLJ40194
SE_01_008401080 chr17:49208376-49220783 Sample_01_0084 Spleen spleen 1080 1 345 26 2 86 956 GNGT2,ABI3,PHOSPHO1,FLJ40194
SE_02_012800363 chr17:49208584-49226980 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 363 8 489 33 1 152 1768 GNGT2,PHOSPHO1,ABI3,FLJ40194
SE_02_131300250 chr17:49208870-49220657 Sample_02_1313 Brain hMGLs_CD33_SNP 250 1 330 25 1 81 930 GNGT2,ABI3,FLJ40194,PHOSPHO1
SE_02_131500287 chr17:49209175-49225407 Sample_02_1315 Brain hMGLs_INPP5D SNP 287 4 433 31 1 136 1614 GNGT2,ABI3,PHOSPHO1,FLJ40194
SE_02_078201100 chr17:49209472-49224562 Sample_02_0782 Blood MEC1 1100 3 409 30 1 115 1403 ABI3,GNGT2,PHOSPHO1,FLJ40194
SE_02_131200193 chr17:49209614-49225106 Sample_02_1312 Brain hMGLs_WT 193 8 411 28 1 133 1487 ABI3,GNGT2,PHOSPHO1,FLJ40194
SE_02_131600298 chr17:49209699-49225896 Sample_02_1316 Brain hMGLs_TREM2-R47H 298 5 429 27 1 141 1537 ABI3,GNGT2,PHOSPHO1,FLJ40194
SE_02_121800878 chr17:49209704-49227529 Sample_02_1218 Bone marrow Daudi 878 7 468 29 1 146 1636 ABI3,GNGT2,PHOSPHO1,FLJ40194
SE_02_131400194 chr17:49209856-49226331 Sample_02_1314 Brain hMGLs_TREM2-KO 194 10 430 25 1 142 1537 ABI3,GNGT2,PHOSPHO1,FLJ40194
SE_00_000600846 chr17:49214866-49220740 Sample_00_0006 Blood CD14-positive-monocyte 846 1 166 8 0 29 577 ABI3,PHOSPHO1,GNGT2,FLJ40194
Genomic distribution of SEs associated with GNGT2
Genome Browser

The strength of the tissue affected by the gene

Expression of GNGT2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)