SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000188910
Gene: GJB3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:34781214-34786369 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103700453 chr1:34762107-34784627 Sample_02_1037 Pharynx FaDu Control 453 6 641 72 0 46 790 GJB4,GJB3,GJB5,GJA4
SE_02_077001356 chr1:34762114-34784380 Sample_02_0770 Ovary OVCA429_shLuc 1356 7 637 72 0 46 780 GJB4,GJB3,GJB5,GJA4
SE_02_005700547 chr1:34762405-34784777 Sample_02_0057 Mammary gland vHMEC 547 6 633 72 0 44 735 GJB4,GJB3,GJB5,GJA4
SE_02_104602339 chr1:34762425-34808469 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2339 12 1357 147 0 152 1719 GJB4,GJB3,GJA4,GJB5
SE_02_113200819 chr1:34778059-34783827 Sample_02_1132 Pancreas KLM1 wt 819 1 151 22 0 21 413 GJB3,GJB4,GJB5,GJA4
SE_02_125400521 chr1:34778072-34787404 Sample_02_1254 Bladder Bladder tumor Basal1 521 5 264 36 0 54 771 GJB3,GJB4,GJB5,GJA4
SE_02_006300649 chr1:34778115-34786882 Sample_02_0063 Skin Keratinocytes 649 1 245 35 0 51 771 GJB3,GJB5,GJB4,GJA4
SE_02_153200387 chr1:34778153-34784856 Sample_02_1532 Mammary gland MCF10A 387 1 168 23 0 23 449 GJB3,GJB4,GJB5,GJA4
SE_02_103500520 chr1:34778168-34785004 Sample_02_1035 Mammary gland HCC70_Vehicle 520 2 174 24 0 32 473 GJB3,GJB4,GJB5,GJA4
SE_02_071900691 chr1:34778217-34784531 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 691 3 154 22 0 21 413 GJB3,GJB4,GJB5,GJA4
SE_02_059600558 chr1:34778281-34784352 Sample_02_0596 Mammary gland MCF10A_ DMSO 558 2 149 22 0 21 413 GJB3,GJB4,GJB5,GJA4
SE_01_002700211 chr1:34778359-34787862 Sample_01_0027 Prostate epithelial-cell-of-prostate 211 1 261 37 0 57 771 GJB3,GJB5,GJB4,GJA4
SE_02_107300760 chr1:34778412-34784383 Sample_02_1073 Keratinocyte keratinocytes stem cell 760 1 146 22 0 21 407 GJB3,GJB4,GJB5,GJA4
SE_02_135700512 chr1:34778445-34784412 Sample_02_1357 Other IC8-deltaEGF-L1596H_GSI_0h 512 3 145 22 0 21 395 GJB3,GJB4,GJB5,GJA4
SE_01_004100768 chr1:34778525-34784930 Sample_01_0041 Skin keratinocyte 768 1 166 24 0 26 435 GJB3,GJB5,GJB4,GJA4
SE_02_060200383 chr1:34778575-34783711 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 383 1 134 21 0 19 380 GJB3,GJB4,GJB5,GJA4
SE_02_071201108 chr1:34778598-34784435 Sample_02_0712 Pancreas BxPC3_sgNEG 1108 1 142 22 0 21 378 GJB3,GJB4,GJB5,GJA4
SE_02_010500637 chr1:34778637-34787178 Sample_02_0105 Skin neonatal_keratinocytes 637 1 241 33 0 52 734 GJB3,GJB5,GJB4,GJA4
SE_02_066001043 chr1:34778639-34784683 Sample_02_0660 Mammary gland MCF10DCIS 1043 1 148 21 0 21 386 GJB3,GJB4,GJB5,GJA4
SE_02_048001108 chr1:34778667-34783616 Sample_02_0480 Gingival epithelial HGEP 1108 3 129 19 0 19 374 GJB3,GJB4,GJB5,GJA4
SE_02_135800632 chr1:34778698-34784542 Sample_02_1358 Other IC8-deltaEGF-L1596H_GSI_2h 632 2 141 20 0 21 371 GJB3,GJB4,GJB5,GJA4
SE_02_060300435 chr1:34778716-34783561 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 435 2 125 18 0 19 370 GJB3,GJB4,GJB5,GJA4
SE_02_070600393 chr1:34778764-34784421 Sample_02_0706 Pancreas SUIT2 WT 393 2 137 20 0 21 364 GJB3,GJB4,GJB5,GJA4
SE_02_135900577 chr1:34778791-34784662 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 577 1 142 20 0 21 372 GJB3,GJB4,GJB5,GJA4
SE_02_070700875 chr1:34778840-34784557 Sample_02_0707 Pancreas BxPC3 WT 875 3 139 20 0 21 358 GJB3,GJB4,GJB5,GJA4
SE_02_137100934 chr1:34778881-34787522 Sample_02_1371 Pancreas Patu899S-untreated 934 2 245 34 0 54 716 GJB3,GJB4,GJB5,GJA4
SE_02_094600825 chr1:34778951-34784377 Sample_02_0946 Tongue HN12 825 2 133 20 0 18 358 GJB3,GJB4,GJB5,GJA4
SE_02_154101062 chr1:34778983-34786482 Sample_02_1541 Nasopharyngeal HNE1 1062 4 212 30 0 48 697 GJB3,GJB4,GJB5,GJA4
SE_02_136600537 chr1:34779044-34784325 Sample_02_1366 Pancreas BxPC3-untreated 537 3 128 19 0 18 358 GJB3,GJB4,GJB5,GJA4
SE_02_136500702 chr1:34779045-34787442 Sample_02_1365 Pancreas AsPC1-untreated 702 4 240 33 0 51 716 GJB3,GJB4,GJB5,GJA4
SE_02_102900842 chr1:34779066-34784375 Sample_02_1029 Colon HCT116 842 1 129 19 0 18 358 GJB3,GJB4,GJB5,GJA4
SE_02_066600578 chr1:34779095-34783425 Sample_02_0666 Prostate RWPE1 Lacz rep1 578 2 114 17 0 15 358 GJB3,GJB4,GJB5,GJA4
SE_02_060000612 chr1:34779118-34784462 Sample_02_0600 Mammary gland MCF10A_p53shRNA_DMSO 612 2 130 19 0 17 358 GJB3,GJB4,GJB5,GJA4
SE_02_088400757 chr1:34779118-34787458 Sample_02_0884 Colon LoVo 757 2 239 33 0 50 716 GJB3,GJB4,GJB5,GJA4
SE_02_039600319 chr1:34779174-34784427 Sample_02_0396 Skin NHEK-D 319 1 126 19 0 17 358 GJB3,GJB5,GJB4,GJA4
SE_02_102500641 chr1:34779448-34784337 Sample_02_1025 Esophagus KYSE150 641 1 113 15 0 16 358 GJB3,GJB4,GJB5,GJA4
SE_02_047900436 chr1:34779461-34783694 Sample_02_0479 Head and neck SCC25 436 1 106 14 0 14 358 GJB3,GJB4,GJB5,GJA4
SE_02_064700813 chr1:34779712-34783587 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 813 1 92 12 0 14 358 GJB3,GJB4,GJB5,GJA4
SE_02_064801394 chr1:34779721-34783659 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1394 1 93 13 0 14 358 GJB3,GJB4,GJB5,GJA4
SE_02_065200876 chr1:34779730-34783689 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 876 1 95 13 0 14 358 GJB3,GJB4,GJB5,GJA4
SE_02_065300248 chr1:34779791-34783568 Sample_02_0653 Tracheobronchial epithelial HTBE_H5N1_03h 248 1 91 12 0 14 358 GJB3,GJB4,GJB5,GJA4
Genomic distribution of SEs associated with GJB3
Genome Browser

The strength of the tissue affected by the gene

Expression of GJB3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)