SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200383
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr1:34778575-34783711
Size: 5136
Super-enhancer rank 383
Number of SE elements: 1
ChIP density(Case|Control): 27657.8736|1226.9904
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: GJB3 ;
ROSE Overlap GJB3 ;
ROSE Proximal GJB4 ; GJB5 ; GJA4 ;
ROSE Closest GJB3 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA GJB5 ; GJA4 ; SMIM12 ; GJB3 ; GJB4 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200383 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers