SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000109586
Gene: GALNT7 Gene type: protein_coding
Strand: + External links:
Genomic region: chr4:173168811-173323967 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_081900031 chr4:172929227-173025210 Sample_02_0819 Ovary Mucinous ovarian cancer 31 15 2561 19 1 167 702 GALNTL6,GALNT7
SE_02_127300791 chr4:172961270-172999199 Sample_02_1273 Cervix HeLa 791 8 1012 9 0 49 467 GALNTL6,GALNT7
SE_03_001300979 chr4:172961876-173015280 Sample_03_0013 Lung A549 979 4 1410 13 0 75 520 GALNTL6,GALNT7
SE_02_014600503 chr4:172971393-172998415 Sample_02_0146 Bone marrow LP-1_SGC-CBP30 503 6 681 7 0 37 467 GALNTL6,GALNT7
SE_02_152300311 chr4:172976213-173014457 Sample_02_1523 Lung A549 DMSO 311 15 1004 10 0 61 520 GALNTL6,GALNT7
SE_02_078400944 chr4:172976752-172999692 Sample_02_0784 Blood OSU-CLL 944 9 599 6 0 36 467 GALNTL6,GALNT7
SE_02_126000270 chr4:172977162-172999600 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 270 6 588 6 0 36 467 GALNTL6,GALNT7
SE_02_059000621 chr4:172978760-172999448 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 621 9 523 4 0 35 467 GALNTL6,GALNT7
SE_02_094801028 chr4:172981087-173002577 Sample_02_0948 Pharyng Detroit562 1028 7 533 3 0 28 467 GALNTL6,GALNT7
SE_02_125900394 chr4:172981143-173002368 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 394 8 524 3 0 28 467 GALNTL6,GALNT7
SE_02_150900395 chr4:172981362-173002098 Sample_02_1509 Lung H3122_LR 395 11 508 3 0 28 467 GALNTL6,GALNT7
SE_02_126200829 chr4:172981468-172999137 Sample_02_1262 Bone Im-GCT-3504_G34W 829 6 436 3 0 26 467 GALNTL6,GALNT7
SE_02_112100703 chr4:172981474-172999411 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 703 7 446 3 0 27 467 GALNTL6,GALNT7
SE_02_048000675 chr4:172981510-173002311 Sample_02_0480 Gingival epithelial HGEP 675 10 513 3 0 28 467 GALNTL6,GALNT7
SE_02_126800430 chr4:172981744-172999440 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 430 8 443 3 0 27 467 GALNTL6,GALNT7
SE_02_026600187 chr4:172982837-173001254 Sample_02_0266 Bronchial HBE_Primary human bronchial epithelial cells_ 187 5 448 3 0 28 467 GALNTL6,GALNT7
SE_02_105900159 chr4:172998210-173058298 Sample_02_1059 Bone A673_WT 159 16 1484 31 0 239 198 GALNTL6,GALNT7
SE_02_147300158 chr4:172998210-173058298 Sample_02_1473 Bone A-673 158 16 1484 31 0 239 198 GALNTL6,GALNT7
SE_02_143200610 chr4:172998623-173058155 Sample_02_1432 Bone A673 STAG2 WT 610 20 1468 31 0 232 198 GALNTL6,GALNT7
SE_02_148500604 chr4:173009089-173057329 Sample_02_1485 Bone SK-ES-1 604 17 1181 28 0 214 193 GALNTL6,GALNT7
SE_02_105800123 chr4:173012019-173077764 Sample_02_1058 Bone A673_SA2 Rescue 123 28 1634 48 0 252 145 GALNTL6,GALNT7
SE_02_128001115 chr4:173012766-173025691 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1115 6 347 6 0 45 60 GALNTL6,GALNT7
SE_02_148200442 chr4:173012873-173052909 Sample_02_1482 Bone POE 442 11 957 21 0 182 145 GALNTL6,GALNT7
SE_02_148600423 chr4:173012948-173025010 Sample_02_1486 Bone SK-N-MC 423 8 322 6 0 41 60 GALNTL6,GALNT7
SE_02_148000717 chr4:173012994-173058088 Sample_02_1480 Bone MHH-ES-1 717 16 1077 27 0 216 145 GALNTL6,GALNT7
SE_02_143301346 chr4:173013076-173068706 Sample_02_1433 Bone A673 STAG2 null 1346 17 1378 37 0 223 145 GALNTL6,GALNT7
SE_02_147500920 chr4:173013699-173057627 Sample_02_1475 Bone CHLA-25 920 12 1054 26 0 206 145 GALNTL6,GALNT7
SE_02_084000803 chr4:173013828-173058145 Sample_02_0840 Embryo hNPCs_R1159Q/+ 803 10 1062 27 0 211 145 GALNTL6,GALNT7
SE_02_154200177 chr4:173014007-173052918 Sample_02_1542 Gastrointestinal Stromal GIST-T1 177 10 935 21 0 177 145 GALNTL6,GALNT7
SE_02_062900259 chr4:173014028-173053209 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 259 8 944 21 0 177 145 GALNTL6,GALNT7
SE_02_063000498 chr4:173014083-173052911 Sample_02_0630 Gastrointestinal Stromal GIST-T1_Imatinib 498 5 931 21 0 176 145 GALNTL6,GALNT7
SE_02_154500074 chr4:173014648-173057901 Sample_02_1545 Gastrointestinal Stromal GIST-T1/816 74 9 1036 27 0 206 145 GALNTL6,GALNT7
SE_02_063100422 chr4:173022956-173053106 Sample_02_0631 Gastrointestinal Stromal GIST-T1_JQ1 422 4 698 17 0 152 85 GALNTL6,GALNT7
SE_02_125300846 chr4:173024376-173058278 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 846 18 776 21 0 182 85 GALNTL6,GALNT7
SE_02_076400625 chr4:173035482-173058297 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 625 3 517 17 0 145 85 GALNTL6,GALNT7
SE_02_077400313 chr4:173035593-173042092 Sample_02_0774 Prostate 22Rv1_delSite1_Clone11/12-D8 313 2 157 5 0 60 85 GALNTL6,GALNT7
SE_02_017000491 chr4:173035635-173058252 Sample_02_0170 Prostate LNCaP_R1881_DOX 491 3 514 17 0 145 85 GALNTL6,GALNT7
SE_02_067300214 chr4:173035786-173058236 Sample_02_0673 Prostate LNCAP_FA 214 6 509 17 0 145 85 GALNTL6,GALNT7
SE_01_000100199 chr4:173035964-173041547 Sample_01_0001 Prostate 22Rv1 199 1 140 3 0 58 85 GALNTL6,GALNT7
SE_01_000200187 chr4:173036006-173041621 Sample_01_0002 Prostate 22Rv1_10nM17beta-hydroxy-5alpha-androstan-3-one 187 1 140 3 0 59 85 GALNTL6,GALNT7
SE_02_077200266 chr4:173036635-173040932 Sample_02_0772 Prostate 22Rv1_delSite1_Clone11/12-F6 266 2 107 2 0 45 85 GALNTL6,GALNT7
SE_02_033001071 chr4:173037418-173058469 Sample_02_0330 Endoderm MHG 1071 5 462 17 0 141 85 GALNTL6,GALNT7
SE_02_154300338 chr4:173037975-173058293 Sample_02_1543 Gastrointestinal Stromal GIST-48 338 7 449 17 0 135 85 GALNTL6,GALNT7
SE_02_086100164 chr4:173061345-173092684 Sample_02_0861 iPSCs SAH_WT 164 9 884 37 0 55 0 GALNT7
SE_02_117200846 chr4:173062690-173092790 Sample_02_1172 Embryo H9 WT 846 4 848 37 0 55 0 GALNT7
SE_02_157000675 chr4:173063461-173076344 Sample_02_1570 iPSCs EiPSC 675 5 356 19 0 23 0 GALNT7
SE_02_157201050 chr4:173063782-173076007 Sample_02_1572 iPSCs FiPSC 1050 2 325 18 0 23 0 GALNT7
SE_02_063000599 chr4:173070425-173109400 Sample_02_0630 Gastrointestinal Stromal GIST-T1_Imatinib 599 13 1097 66 0 90 0 GALNT7
SE_02_062900154 chr4:173070436-173124725 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 154 10 1504 111 0 123 0 GALNT7
SE_02_063100400 chr4:173070933-173124078 Sample_02_0631 Gastrointestinal Stromal GIST-T1_JQ1 400 12 1475 110 0 123 0 GALNT7
SE_02_154500058 chr4:173071278-173123929 Sample_02_1545 Gastrointestinal Stromal GIST-T1/816 58 15 1461 110 0 123 0 GALNT7
SE_02_150201027 chr4:173071606-173078414 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 1027 2 167 10 0 27 0 GALNT7
SE_02_154200095 chr4:173071844-173124211 Sample_02_1542 Gastrointestinal Stromal GIST-T1 95 14 1447 110 0 123 0 GALNT7
SE_02_003601216 chr4:173072336-173093077 Sample_02_0036 Embryo H7 1216 3 573 27 0 48 0 GALNT7
SE_02_156700627 chr4:173072375-173076436 Sample_02_1567 iPSCs CiPSC 627 1 99 9 0 16 0 GALNT7
SE_02_105900213 chr4:173137396-173193732 Sample_02_1059 Bone A673_WT 213 26 1482 124 4 146 687 GALNT7
SE_02_147300215 chr4:173137396-173193732 Sample_02_1473 Bone A-673 215 26 1482 124 4 146 687 GALNT7
SE_02_105800454 chr4:173144801-173176964 Sample_02_1058 Bone A673_SA2 Rescue 454 13 863 80 4 91 687 GALNT7
SE_01_005700059 chr4:173159309-173274387 Sample_01_0057 Pancreas duct PANC-1 59 13 2925 163 13 273 794 GALNT7
SE_02_125600105 chr4:173165620-173258778 Sample_02_1256 Pancreatic duct pancreatic ductal epithelium cell 105 30 2355 129 12 225 694 GALNT7,MIR548T
SE_02_003400349 chr4:173166041-173173865 Sample_02_0034 Peripheral blood CUTLL1_GSI 349 4 198 15 3 36 577 GALNT7
SE_02_049100147 chr4:173166388-173257884 Sample_02_0491 Pharyng Detroit 562-Control 147 18 2310 126 12 225 634 GALNT7,MIR548T
SE_02_048101676 chr4:173166460-173192652 Sample_02_0481 Mammary gland MDA-MB231 1676 10 694 52 3 82 518 GALNT7
SE_02_113900572 chr4:173166476-173193429 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 572 8 712 53 3 83 516 GALNT7
SE_02_113800404 chr4:173166529-173193065 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 404 6 702 53 3 82 514 GALNT7
SE_02_049200474 chr4:173166627-173193511 Sample_02_0492 Pharyng Detroit 562_LPS 474 8 712 53 3 83 496 GALNT7
SE_02_094800023 chr4:173166793-173220708 Sample_02_0948 Pharyng Detroit562 23 13 1361 81 7 140 478 GALNT7,MIR548T
SE_02_036200517 chr4:173166872-173173285 Sample_02_0362 Haematopoietic and lymphoid tissue REH 517 1 162 12 2 36 472 GALNT7
SE_02_088400820 chr4:173166912-173193898 Sample_02_0884 Colon LoVo 820 6 713 53 3 83 471 GALNT7
SE_02_059401344 chr4:173167092-173193391 Sample_02_0594 iPSC-derived neural progenitors 1344 8 700 53 3 83 466 GALNT7
SE_02_076500334 chr4:173167102-173215458 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 334 18 1222 73 7 134 466 GALNT7
SE_02_075800486 chr4:173167164-173186706 Sample_02_0758 Peripheral blood REH 486 4 509 44 3 70 466 GALNT7
SE_02_099200293 chr4:173167282-173192425 Sample_02_0992 Mammary gland MDA-MB-231_Par 293 5 677 52 3 82 466 GALNT7
SE_01_000100056 chr4:173167287-173195819 Sample_01_0001 Prostate 22Rv1 56 12 748 53 3 95 466 GALNT7
SE_02_083500819 chr4:173167307-173175196 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 819 4 207 15 3 42 466 GALNT7
SE_02_061700673 chr4:173167313-173195152 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 673 7 734 53 3 94 466 GALNT7
SE_01_000200079 chr4:173167525-173192399 Sample_01_0002 Prostate 22Rv1_10nM17beta-hydroxy-5alpha-androstan-3-one 79 11 668 51 3 82 466 GALNT7
SE_02_130300217 chr4:173167667-173265429 Sample_02_1303 Lymphoma RL_tazemetostat 217 38 2493 132 12 226 573 GALNT7,MIR548T
SE_02_077400107 chr4:173167677-173193456 Sample_02_0774 Prostate 22Rv1_delSite1_Clone11/12-D8 107 17 687 52 3 83 466 GALNT7
SE_02_132000745 chr4:173167678-173191771 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 745 4 651 51 3 82 466 GALNT7
SE_02_143201450 chr4:173167682-173170873 Sample_02_1432 Bone A673 STAG2 WT 1450 1 81 7 1 34 466 GALNT7
SE_02_130200224 chr4:173167688-173265401 Sample_02_1302 Lymphoma RL DMSO 224 31 2493 132 12 226 573 GALNT7,MIR548T
SE_02_063000538 chr4:173167790-173210080 Sample_02_0630 Gastrointestinal Stromal GIST-T1_Imatinib 538 16 1078 67 5 122 460 GALNT7
SE_02_097100845 chr4:173167807-173191877 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 845 6 649 50 3 82 459 GALNT7
SE_02_106900334 chr4:173167847-173195143 Sample_02_1069 Bone marrow Bone marrow aspirate 334 5 717 51 3 93 454 GALNT7
SE_02_155700235 chr4:173167947-173193160 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 235 8 674 50 3 81 444 GALNT7
SE_02_121800950 chr4:173167980-173174280 Sample_02_1218 Bone marrow Daudi 950 2 167 11 3 36 438 GALNT7
SE_02_126301350 chr4:173168184-173192863 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1350 4 658 48 2 73 417 GALNT7
SE_02_076800234 chr4:173168814-173257849 Sample_02_0768 Ovary SKOV3 234 56 2261 121 11 201 424 GALNT7,MIR548T
SE_02_125700165 chr4:173169341-173220879 Sample_02_1257 Pancreas pancreatic cancer cells 165 8 1307 75 6 110 158 GALNT7,MIR548T
SE_02_077000516 chr4:173169657-173220355 Sample_02_0770 Ovary OVCA429_shLuc 516 41 1276 73 6 110 51 GALNT7,MIR548T
SE_02_108500832 chr4:173170686-173192594 Sample_02_1085 Retinal Pigmented Epithelial hTERT-RPE1 832 8 589 44 2 49 0 GALNT7
SE_02_153900582 chr4:173171306-173219799 Sample_02_1539 Nasopharyngeal C666-1 582 39 1225 71 6 105 0 GALNT7,MIR548T
SE_02_152400399 chr4:173171374-173195306 Sample_02_1524 Lung H3122 DMSO 399 13 634 45 2 59 0 GALNT7
SE_02_070800541 chr4:173174989-173193864 Sample_02_0708 Pancreas hF3 organoid 541 10 505 38 0 44 0 GALNT7
SE_02_103602422 chr4:173175693-173217024 Sample_02_1036 Mammary gland HCC70_XY018 2422 11 1041 59 4 94 0 GALNT7
SE_02_076700386 chr4:173178478-173220414 Sample_02_0767 Ovary OVCA429 386 25 1053 55 4 96 0 GALNT7,MIR548T
SE_02_150900506 chr4:173179705-173193620 Sample_02_1509 Lung H3122_LR 506 8 390 29 0 34 0 GALNT7
SE_02_099000562 chr4:173180273-173220406 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 562 11 1017 53 4 90 0 GALNT7,MIR548T
SE_02_071000776 chr4:173181506-173192898 Sample_02_0710 Pancreas hN34_organoid 776 6 333 24 0 23 0 GALNT7
SE_02_003600759 chr4:173188043-173257961 Sample_02_0036 Embryo H7 759 17 1753 81 9 153 107 GALNT7
SE_02_022100390 chr4:173217259-173266055 Sample_02_0221 Blood CCRF-CEM 390 6 1253 58 5 90 107 GALNT7
SE_02_034800494 chr4:173217775-173282956 Sample_02_0348 Peripheral blood CUTLL1_wild-type 494 11 1668 76 5 123 107 GALNT7
Genomic distribution of SEs associated with GALNT7
Genome Browser

The strength of the tissue affected by the gene

Expression of GALNT7

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)