Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_125700115 chr1:151968216-152001589 33373 115 10 796 127 1 99 465 S100A10,NBPF18P,S100A11
SE_02_125700068 chr1:156096832-156134434 37602 68 7 909 90 4 248 730 LMNA,LAMTOR2,RAB25,UBQLN4,SEMA4A,MEX3A
SE_02_125700043 chr1:16120787-16187860 67073 43 16 1887 172 3 315 2059 EPHA2,FAM131C,RSG1,ARHGEF19
SE_02_125700056 chr1:223698497-223778587 80090 56 16 2182 253 6 181 2143 CAPN2,CAPN8
SE_02_125700063 chr1:234598188-234622055 23867 63 3 638 45 2 0 780 IRF2BP2,LOC101927787,LINC00184
SE_02_125700024 chr1:234953659-235001029 47370 24 6 1463 66 6 189 308 LOC101927851
SE_02_125700044 chr1:235047752-235105910 58158 44 11 944 94 2 31 0 LINC01348,SNORA14B,TOMM20
SE_02_125700166 chr1:235902017-235925737 23720 166 7 708 49 2 33 0 MIR1537,LYST
SE_02_125700073 chr1:39153512-39214636 61124 73 12 1510 96 4 178 209 MACF1
SE_02_125700004 chr1:8000976-8215978 215002 4 36 6046 489 15 459 567 ERRFI1,LOC102724539,PARK7
SE_02_125700113 chr1:85575385-85586130 10745 113 1 255 14 1 163 646 CYR61,DDAH1
SE_02_125700181 chr1:85604545-85631603 27058 181 4 741 66 3 85 0 CYR61,DDAH1
SE_02_125700171 chr10:104311373-104340455 29082 171 4 762 69 2 99 1312 ITPRIP,LOC101927472,GSTO2,CFAP58,MIR4482,CFAP58-AS1
SE_02_125700143 chr10:119650923-119687656 36733 143 4 1172 118 3 177 801 BAG3,INPP5F
SE_02_125700137 chr10:122100767-122146911 46144 137 14 1532 116 3 100 509 TACC2
SE_02_125700189 chr10:132663326-132688361 25035 189 5 834 11 1 109 0 INPP5A,NKX6-2
SE_02_125700052 chr10:32923246-32988097 64851 52 12 1669 181 10 109 580 ITGB1
SE_02_125700107 chr10:33234776-33336622 101846 107 29 2858 38 14 593 654 NRP1
SE_02_125700060 chr10:3739143-3788251 49108 60 7 1539 53 6 337 1178 LOC105376360,KLF6
SE_02_125700015 chr10:3801606-3909601 107995 15 23 3727 113 20 259 0 KLF6
SE_02_125700134 chr10:43380997-43422380 41383 134 6 1272 136 3 139 1044 HNRNPF,ZNF487,FXYD4
SE_02_125700106 chr10:4649164-4707210 58046 106 11 1713 47 5 83 437 LINC00705,LINC00704
SE_02_125700065 chr10:68068052-68157073 89021 65 24 2403 200 4 260 1035 MYPN,HERC4
SE_02_125700117 chr10:71833154-71874397 41243 117 13 1232 110 4 14 267 PSAP,CDH23,MIR7152
SE_02_125700030 chr10:77466192-77641675 175483 30 45 4755 332 20 454 977 KCNMA1
SE_02_125700011 chr10:93375612-93499844 124232 11 29 3566 361 12 273 1318 MYOF,CEP55
SE_02_125700121 chr10:99906711-100009706 102995 121 29 2721 347 0 115 1153 DNMBP-AS1,DNMBP
SE_02_125700026 chr11:118905052-118930376 25324 26 2 607 39 2 434 659 BCL9L,MIR4492,CXCR5,UPK2,FOXR1
SE_02_125700046 chr11:128447573-128524512 76939 46 19 2005 23 6 571 1042 MIR6090,ETS1,LOC101929517
SE_02_125700058 chr11:33687460-33738374 50914 58 7 1393 142 9 74 1778 CD59,C11ORF91,FBXO3-AS1,FBXO3
SE_02_125700162 chr11:34996585-35043011 46426 162 11 1291 122 4 110 0 MIR1343
SE_02_125700031 chr11:35137050-35230753 93703 31 24 2744 166 22 495 1376 LOC100507144,CD44
SE_02_125700109 chr11:62537775-62560642 22867 109 1 540 39 2 226 353 AHNAK,MIR3654,EEF1G,TUT1,MTA2,MIR6747
SE_02_125700059 chr11:64847361-64887979 40618 59 3 1211 90 0 181 1421 EHD1,GPHA2,ATG2A,MEN1,MAP4K2,PPP2R5B,MIR6749,CDC42BPG,MIR192,MIR6750,MIR194-2
SE_02_125700039 chr11:65415375-65437021 21646 39 1 590 23 2 46 1695 NEAT1,SLC25A45,FRMD8,MIR612
SE_02_125700010 chr11:65469027-65510849 41822 10 1 1187 125 4 50 963 MALAT1,SCYL1,LTBP3,NEAT1,MIR612
SE_02_125700016 chr11:65887501-65918962 31461 16 1 810 99 4 299 1774 FOSL1,CCDC85B,FIBP,C11ORF68,MUS81,SART1,TSGA10IP,CTSW,EFEMP2,DRAP1,CFL1
SE_02_125700168 chr11:67345562-67382050 36488 168 6 854 62 1 346 1509 POLD4,CLCF1,LOC100130987,RAD9A,PPP1CA,TBC1D10C,SSH3,CARNS1,RPS6KB2
SE_02_125700078 chr11:69293506-69330608 37102 78 9 1073 62 3 89 665 MYEOV
SE_02_125700119 chr11:86725661-86747296 21635 119 4 641 66 10 56 0 PRSS23
SE_02_125700142 chr11:86798240-86819692 21452 142 1 621 48 1 111 589 PRSS23,OR7E2P
SE_02_125700087 chr11:9552067-9580825 28758 87 6 715 56 1 110 812 WEE1
SE_02_125700118 chr12:104273766-104320459 46693 118 15 1246 112 2 61 792 TXNRD1,EID3
SE_02_125700088 chr12:108802333-108857559 55226 88 12 1546 59 3 91 841 SSH1,MIR619,DAO
SE_02_125700033 chr12:120218226-120265704 47478 33 1 1210 70 0 175 1284 PXN,SIRT4,RNU4-1,GCN1,PXN-AS1,RPLP0,RNU4-2
SE_02_125700080 chr12:122860479-122900913 40434 80 6 1169 66 0 138 1487 VPS37B,HIP1R
SE_02_125700183 chr12:124509103-124567334 58231 183 14 1876 85 5 163 291 NCOR2
SE_02_125700095 chr12:124904000-124942234 38234 95 8 1315 49 4 71 1108 MIR5188,UBC,SCARB1,DHX37
SE_02_125700150 chr12:46359659-46391623 31964 150 7 827 47 0 160 694 SLC38A2,LOC100288798
SE_02_125700012 chr12:53972250-54029614 57364 12 1 1416 68 1 1366 2531 MIR196A2,HOXC6,HOXC9,HOXC11,HOXC8,HOXC10,HOXC4,HOXC5,HOXC-AS1,HOXC-AS2,HOTAIR,HOXC-AS3,HOXC12,HOXC13,HOXC13-AS,FLJ12825,MIR615
SE_02_125700037 chr12:75934220-75995111 60891 37 15 1597 40 5 161 0 PHLDA1
SE_02_125700075 chr12:76016101-76038900 22799 75 4 594 10 1 99 792 PHLDA1,NAP1L1
SE_02_125700082 chr13:114097866-114132892 35026 82 6 1185 111 2 51 193 RASA3
SE_02_125700021 chr13:97221004-97344565 123561 21 26 3101 112 14 545 304 MBNL2,LINC00456
SE_02_125700125 chr14:49969094-50009634 40540 125 7 1081 89 2 55 841 LINC01588,LINC01599,MIR6076
SE_02_125700014 chr15:60349599-60407588 57989 14 11 1602 113 7 195 876 ANXA2
SE_02_125700003 chr15:67064112-67199416 135304 3 4 3753 308 50 521 1829 SMAD3
SE_02_125700084 chr15:70692920-70812651 119731 84 34 2939 228 3 172 259 UACA,LRRC49,LARP6
SE_02_125700020 chr15:90143395-90234024 90629 20 10 2965 393 3 319 2535 SEMA4B,CIB1,TTLL13P,NGRN,IDH2,GDPGP1
SE_02_125700097 chr15:92797446-92833676 36230 97 8 1120 33 0 47 0 LINC01578,ASB9P1
SE_02_125700180 chr15:92899751-92920214 20463 180 1 592 21 0 136 299 CHD2,MIR3175,LINC01578
SE_02_125700178 chr16:15944970-16026395 81425 178 25 2592 214 10 52 537 ABCC1
SE_02_125700129 chr16:1678255-1724269 46014 129 9 1365 107 5 66 1298 MAPK8IP3,HN1L,MRPS34,MIR3177,EME2,NME3
SE_02_125700173 chr16:29257550-29274632 17082 173 1 624 83 0 0 0 SNX29P2
SE_02_125700190 chr16:69395867-69477689 81822 190 17 2004 227 3 186 848 CYB5B,TERF2,TMED6
SE_02_125700155 chr16:86566477-86587770 21293 155 1 774 77 5 0 1171 FOXC2-AS1,FOXC2,FOXL1,MTHFSD,FLJ30679
SE_02_125700128 chr16:89292053-89347627 55574 128 13 2063 143 6 27 1426 LOC100287036,ANKRD11
SE_02_125700169 chr16_KI270853v1_alt:1603070-1685045 81975 169 26 0 0 0 0 0 ABCC1
SE_02_125700100 chr17:15944343-15995916 51573 100 8 1506 185 1 82 807 ADORA2B,ZSWIM7,TTC19
SE_02_125700167 chr17:17681778-17754188 72410 167 12 1918 130 1 289 177 RAI1,SMCR2,SMCR5,RAI1-AS1
SE_02_125700131 chr17:42240468-42276130 35662 131 8 830 85 1 117 23 STAT5B,GHDC,STAT5A
SE_02_125700029 chr17:43231486-43301517 70031 29 36 0 0 0 0 0 RNU2-1,TMEM106A,LINC00854
SE_02_125700174 chr17:44775316-44831635 56319 174 15 1513 141 3 107 2557 GJC1,ADAM11,HIGD1B
SE_02_125700007 chr17:48551239-48618663 67424 7 1 1643 146 7 1332 4145 HOXB6,HOXB5,HOXB-AS1,HOXB-AS3,HOXB7,MIR10A,HOXB8,HOXB3,HOXB4,HOXB1,HOXB2,HOXB9,MIR196A1
SE_02_125700072 chr17:50044709-50090399 45690 72 9 1300 106 7 295 3344 ITGA3,LOC284080,PDK2,DLX3,SAMD14
SE_02_125700006 chr17:59746239-59864472 118233 6 29 2620 254 8 283 587 TUBD1,MIR21,VMP1,PTRH2,RPS6KB1
SE_02_125700017 chr17:72387240-72541155 153915 17 28 4508 47 16 557 424 LINC00673
SE_02_125700103 chr17:77119473-77154028 34555 103 8 974 53 7 71 254 SEC14L1,MIR6516,SCARNA16
SE_02_125700018 chr17:77281447-77430829 149382 18 32 4846 304 14 364 1428 SEPT9,MIR4316
SE_02_125700094 chr17:78313404-78359993 46589 94 8 1437 15 2 279 722 SOCS3,LOC100996291,LOC101928674,PGS1
SE_02_125700188 chr17:81035769-81057349 21580 188 3 946 102 2 76 184 BAIAP2,CHMP6,BAIAP2-AS1
SE_02_125700081 chr17:81387050-81426389 39339 81 6 1377 82 2 409 274 BAHCC1,MIR4740,LOC100130370,MIR3186
SE_02_125700144 chr18:3445834-3465030 19196 144 4 514 19 1 199 979 TGIF1,GAPLINC
SE_02_125700035 chr18:3591332-3628682 37350 35 6 998 57 5 81 771 DLGAP1,DLGAP1-AS2,DLGAP1-AS1
SE_02_125700025 chr18:77043886-77132779 88893 25 13 2863 140 7 65 206 MBP
SE_02_125700179 chr18:9705698-9745902 40204 179 9 1200 127 7 54 188 RAB31
SE_02_125700112 chr19:1147848-1217019 69171 112 11 2396 114 3 82 960 STK11,SBNO2,GPX4,CBARP,MIDN,ATP5D
SE_02_125700032 chr19:13833244-13856367 23123 32 1 670 49 1 194 522 LOC284454,MIR27A,MIR24-2,MIR23A,NANOS3,C19ORF57,ZSWIM4,MIR181D,MIR181C,CC2D1A
SE_02_125700187 chr19:2523220-2553111 29891 187 6 1103 36 1 0 0 GNG7,GADD45B
SE_02_125700149 chr19:33012313-33081968 69655 149 13 1921 329 12 63 711 GPATCH1,RHPN2,FAAP24,CEP89
SE_02_125700002 chr19:38636666-38736862 100196 2 11 3067 347 8 476 3503 EIF3K,CAPN12,ACTN4,MAP4K1,LGALS7
SE_02_125700022 chr19:38829531-38854864 25333 22 2 844 75 0 254 1757 HNRNPL,ECH1,NFKBIB,LGALS7B,SIRT2,RINL,LGALS4
SE_02_125700048 chr19:39070236-39086073 15837 48 1 542 35 1 0 280 PAPL,FBXO27,PAK4
SE_02_125700114 chr19:39387304-39391189 3885 114 1 106 10 0 59 550 PAF1,MIR4530,PLEKHG2,RPS16,SAMD4B,MED29,ZFP36
SE_02_125700001 chr19:39391393-39440327 48934 1 1 1485 103 0 412 4502 RPS16,PLEKHG2,ZFP36,MIR4530,MED29,TIMM50,SUPT5H,SAMD4B,PAF1
SE_02_125700070 chr19:39441997-39448902 6905 70 1 234 23 0 16 163 SUPT5H,MIR4530,PLEKHG2,RPS16,TIMM50,ZFP36
SE_02_125700111 chr19:39477748-39484581 6833 111 1 210 15 0 42 456 TIMM50,EID2B,DLL3,SELV,SUPT5H,RPS16
SE_02_125700069 chr19:39830269-39835500 5231 69 1 139 10 4 77 471 FBL,DYRK1B,MIR6719
SE_02_125700154 chr19:39844190-39847448 3258 154 1 115 7 1 9 124 FBL,MIR6719,DYRK1B
SE_02_125700047 chr19:39968004-39976051 8047 47 2 230 31 0 39 438 PSMC4,FCGBP,ZNF546
SE_02_125700067 chr19:40281079-40288959 7880 67 1 192 16 0 43 258 AKT2,MIR641
SE_02_125700092 chr19:53862708-53879722 17014 92 5 481 29 0 89 1085 MYADM,CACNG7,NLRP12,PRKCG
SE_02_125700049 chr19:53977809-54025494 47685 49 10 1460 119 1 114 2597 CACNG6,CACNG8,MIR935,VSTM1
SE_02_125700105 chr19:55205398-55226543 21145 105 3 704 39 1 15 398 PTPRH,SYT5,TMEM86B,TNNI3,MIR6804,MIR6802,DNAAF3,MIR6803,PPP6R1
SE_02_125700102 chr2:100817976-100905888 87912 102 32 2503 110 4 196 356 NPAS2
SE_02_125700034 chr2:101031136-101151357 120221 34 32 3230 309 8 191 1015 TBC1D8,RPL31
SE_02_125700028 chr2:10272154-10433933 161779 28 46 5109 315 22 290 2046 HPCAL1,SNORA80B,ODC1,LOC101929715
SE_02_125700023 chr2:105362525-105410922 48397 23 6 1362 107 2 123 1078 FHL2,TGFBRAP1,C2ORF49
SE_02_125700104 chr2:110094050-110116531 22481 104 3 561 38 1 36 243 MALL,MIR4267,MIR4436B1
SE_02_125700108 chr2:173074528-173133795 59267 108 9 1526 97 3 192 236 ZAK
SE_02_125700152 chr2:187528817-187555566 26749 152 3 601 47 0 1 50 TFPI
SE_02_125700120 chr2:200371994-200422704 50710 120 9 1205 71 8 224 144 SPATS2L
SE_02_125700163 chr2:233412641-233430616 17975 163 1 508 32 12 23 81 DGKD
SE_02_125700096 chr2:234239884-234262046 22162 96 2 621 9 0 20 0 SPP2,ARL4C
SE_02_125700090 chr2:234952271-235004982 52711 90 9 1756 13 2 105 354 SH3BP4
SE_02_125700176 chr2:238425503-238448277 22774 176 5 664 106 6 72 793 ASB1
SE_02_125700177 chr2:36353366-36413665 60299 177 17 1990 128 8 314 505 CRIM1,LOC100288911
SE_02_125700157 chr2:36534301-36580318 46017 157 17 1568 140 12 195 606 CRIM1,FEZ2
SE_02_125700027 chr2:9207021-9313960 106939 27 26 2978 268 12 215 203 ASAP2
SE_02_125700140 chr20:17555370-17573695 18325 140 1 510 21 1 72 487 DSTN,BFSP1
SE_02_125700050 chr20:25218725-25314706 95981 50 28 3246 430 6 239 4432 PYGB,ENTPD6,ABHD12,LOC101926889
SE_02_125700164 chr20:31691904-31723994 32090 164 12 721 55 4 235 364 ABALON,BCL2L1,TPX2
SE_02_125700077 chr20:35300555-35330124 29569 77 8 700 74 23 0 820 UQCC1,EIF6,FAM83C-AS1,MMP24-AS1,FAM83C
SE_02_125700036 chr20:47293846-47364903 71057 36 19 1972 12 4 224 1463 ZMYND8,LOC100131496
SE_02_125700127 chr20:50635126-50696344 61218 127 15 1750 135 3 88 305 LOC100506175,FAM65C,MIR1302-5,PARD6B,MIR645
SE_02_125700061 chr20:50724049-50772017 47968 61 12 1341 117 3 143 595 PARD6B,BCAS4,FAM65C
SE_02_125700053 chr20:53563907-53625921 62014 53 14 1640 36 6 209 962 LOC101927770,ZNF217
SE_02_125700042 chr20:53731882-53809457 77575 42 21 2277 28 9 53 0 SUMO1P1
SE_02_125700091 chr21:38784674-38824654 39980 91 7 1150 85 7 118 1072 ETS2,LINC00114,LOC101928398
SE_02_125700126 chr21:41749063-41787951 38888 126 4 1219 127 8 96 414 RIPK4,MIR6814,LINC00479,LINC00112
SE_02_125700079 chr21:45405805-45442841 37036 79 1 1482 143 1 34 1415 COL18A1,COL18A1-AS1,COL18A1-AS2,MIR6815
SE_02_125700013 chr22:30182145-30262246 80101 13 10 2133 199 17 497 1238 LIF,OSM,GATSL3
SE_02_125700054 chr22:36301531-36388033 86502 54 20 2697 161 10 325 2427 MYH9,APOL1,MIR6819
SE_02_125700099 chr22:46052710-46071026 18316 99 1 486 32 2 176 685 PRR34,PRR34-AS1,MIR3619,LINC00899,LOC730668,MIRLET7BHG,MIRLET7A3,MIR4763,MIRLET7B
SE_02_125700076 chr22:46071416-46097041 25625 76 1 867 28 1 125 212 MIR3619,MIRLET7BHG,PRR34,LINC00899,PRR34-AS1,MIRLET7A3,MIR4763,MIRLET7B
SE_02_125700122 chr3:10164874-10224373 59499 122 18 2003 188 3 57 759 IRAK2,BRK1,VHL,TATDN2
SE_02_125700086 chr3:11545681-11619839 74158 86 16 2370 209 15 148 1343 VGLL4,ATG7
SE_02_125700064 chr3:149362360-149380058 17698 64 1 490 42 3 58 464 TM4SF1-AS1,TM4SF1,TM4SF18
SE_02_125700145 chr3:149380647-149394093 13446 145 1 372 26 1 24 0 TM4SF1-AS1,TM4SF18,TM4SF1
SE_02_125700005 chr3:149501137-149661587 160450 5 21 4340 174 19 413 1414 WWTR1-AS1,WWTR1,TM4SF4
SE_02_125700083 chr3:172123032-172219069 96037 83 17 2469 17 15 225 114 FNDC3B
SE_02_125700175 chr3:45104643-45178815 74172 175 15 2244 323 12 81 463 CDCP1,TMEM158
SE_02_125700130 chr3:45593416-45669311 75895 130 21 2130 317 43 88 601 LIMD1,SACM1L,LIMD1-AS1
SE_02_125700138 chr4:140080989-140117558 36569 138 5 953 30 5 163 0 MAML3
SE_02_125700165 chr4:173169341-173220879 51538 165 8 1307 75 6 110 158 GALNT7,MIR548T
SE_02_125700085 chr4:7835591-7940449 104858 85 41 3966 420 8 110 493 LOC389199,AFAP1
SE_02_125700158 chr5:139637032-139675591 38559 158 4 853 44 1 530 202 CXXC5
SE_02_125700133 chr5:14033151-14043093 9942 133 2 387 17 1 38 0 DNAH5
SE_02_125700008 chr5:14141308-14285425 144117 8 20 3934 149 11 310 306 TRIO
SE_02_125700186 chr5:142352512-142365894 13382 186 2 375 33 0 37 0 LOC101926941,SPRY4,SPRY4-IT1
SE_02_125700045 chr5:149471467-149564853 93386 45 25 2258 108 3 264 1229 CSNK1A1,MIR143,ARHGEF37,MIR145
SE_02_125700071 chr5:172758478-172809591 51113 71 15 1565 72 5 217 574 LOC101928093,DUSP1,ERGIC1
SE_02_125700093 chr5:172831983-172882497 50514 93 13 1501 79 10 108 1178 ERGIC1
SE_02_125700098 chr5:52984129-53042204 58075 98 12 1405 194 4 97 195 ITGA2
SE_02_125700124 chr5:76785259-76839561 54302 124 20 1544 129 4 75 454 F2RL1,S100Z
SE_02_125700135 chr6:10368872-10427002 58130 135 11 1495 52 4 628 1667 TFAP2A,TFAP2A-AS1,MIR5689,LINC00518
SE_02_125700184 chr6:149834816-149865089 30273 184 10 797 101 3 44 568 RAET1E-AS1,LRP11,RAET1E
SE_02_125700038 chr6:151034520-151071627 37107 38 4 1211 35 5 96 134 MTHFD1L,LOC102723831
SE_02_125700172 chr6:157981810-158072252 90442 172 19 2805 181 7 108 2268 SYNJ2-IT1,SYNJ2
SE_02_125700116 chr6:16672636-16731759 59123 116 22 1565 44 15 101 0 ATXN1
SE_02_125700182 chr6:34237659-34250478 12819 182 1 425 18 1 113 1493 MIR6835,HMGA1,C6ORF1
SE_02_125700147 chr6:42199912-42233004 33092 147 10 969 157 15 82 948 MRPS10,TRERF1,GUCA1B,GUCA1A
SE_02_125700089 chr6:56671455-56759067 87612 89 27 2143 119 2 140 227 DST
SE_02_125700146 chr6:85447546-85490472 42926 146 5 1059 86 1 93 554 NT5E
SE_02_125700062 chr7:101083725-101144110 60385 62 13 1828 217 9 96 2620 TRIM56,SERPINE1,MIR4653,VGF,AP1S1,NAT16
SE_02_125700066 chr7:116497593-116547417 49824 66 14 1278 160 12 229 1134 CAV1,CAV2
SE_02_125700009 chr7:130872400-130932567 60167 9 1 1728 114 12 157 526 LOC100506860,LINC-PINT,MIR29A,MIR29B1
SE_02_125700074 chr7:1502667-1544988 42321 74 8 1687 168 2 100 2786 TMEM184A,INTS1,MAFK,PSMG3,MICALL2,PSMG3-AS1
SE_02_125700141 chr7:36257611-36304083 46472 141 12 1388 94 2 89 815 EEPD1,KIAA0895
SE_02_125700160 chr7:36386734-36448796 62062 160 14 1544 148 5 112 880 ANLN,KIAA0895
SE_02_125700019 chr7:47473421-47611411 137990 19 47 4133 161 9 240 378 TNS3,LINC01447,C7ORF65
SE_02_125700110 chr7:47757679-47790469 32790 110 5 1011 103 4 54 300 PKD1L1,LINC00525,C7ORF69
SE_02_125700132 chr7:5414877-5430422 15545 132 2 485 3 0 266 846 TNRC18
SE_02_125700041 chr7:55018436-55112765 94329 41 22 2732 132 16 261 254 EGFR
SE_02_125700136 chr7:55125352-55137860 12508 136 4 367 11 0 27 0 EGFR,EGFR-AS1
SE_02_125700123 chr7:73698753-73719541 20788 123 2 539 34 0 127 1517 MIR4284,STX1A,ABHD11,VPS37D,ABHD11-AS1,DNAJC30,WBSCR22
SE_02_125700139 chr7:98344645-98401134 56489 139 15 1591 152 3 78 271 BAIAP2L1
SE_02_125700185 chr8:102786934-102810800 23866 185 3 606 49 1 86 670 AZIN1
SE_02_125700161 chr8:127793118-127817340 24222 161 1 651 23 3 37 207 MIR1204
SE_02_125700055 chr8:127839719-127883408 43689 55 1 1336 23 5 57 93 MIR1204,PVT1
SE_02_125700040 chr8:143928425-143976695 48270 40 5 1550 142 6 379 3590 PLEC,MIR661,EPPK1,PARP10,GRINA,SPATC1
SE_02_125700156 chr8:61684585-61736334 51749 156 7 1403 71 1 53 282 ASPH,MIR4470
SE_02_125700159 chr8:61754307-61784145 29838 159 8 903 41 1 10 373 ASPH,MIR4470
SE_02_125700148 chr8:66512552-66562229 49677 148 8 1384 50 2 123 433 C8ORF46,MYBL1
SE_02_125700153 chr8:8269069-8348345 79276 153 19 3062 276 8 225 613 SGK223,FAM86B3P
SE_02_125700101 chr9:127943673-127980835 37162 101 1 1059 93 0 0 1166 FAM102A,ST6GALNAC6,ST6GALNAC4,PIP5KL1,DPM2
SE_02_125700151 chr9:129457610-129503884 46274 151 11 1388 84 0 137 696 LINC00963
SE_02_125700057 chr9:21504592-21593978 89386 57 11 2562 141 11 167 218 MIR31,MIR31HG,IFNE
SE_02_125700170 chr9:21673443-21690280 16837 170 2 658 40 10 65 0 MTAP
SE_02_125700051 chr9:37995868-38069215 73347 51 10 2265 160 15 257 463 SHB

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM4490518
Input ID: Name:GSM4490528
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb