SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000143753
Gene: DEGS1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:224175756-224193441 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104700331 chr1:224106122-224205872 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 331 36 2782 311 1 152 1131 FBXO28,DEGS1,LOC101927164,LOC101927143
SE_02_104900776 chr1:224143449-224206502 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 776 30 1711 189 1 98 854 FBXO28,DEGS1,LOC101927164,LOC101927143
SE_02_012400016 chr1:224147707-224267454 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 16 15 3175 340 1 114 1161 FBXO28,NVL,MIR320B2,DEGS1
SE_02_003601493 chr1:224162954-224184349 Sample_02_0036 Embryo H7 1493 5 533 61 1 11 165 DEGS1,FBXO28
SE_02_086100728 chr1:224163319-224166195 Sample_02_0861 iPSCs SAH_WT 728 2 70 7 1 0 0 FBXO28,DEGS1,LOC101927143
SE_02_143400197 chr1:224164842-224216502 Sample_02_1434 Trophoblast trophoblast stem cells 197 10 1352 188 0 36 417 LOC101927143,DEGS1,LOC101927164,MIR320B2
SE_02_139400092 chr1:224165766-224185690 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 92 5 484 57 0 11 165 DEGS1,LOC101927164,LOC101927143
SE_02_104301066 chr1:224165895-224188252 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1066 17 551 68 0 11 165 DEGS1,LOC101927164,LOC101927143
SE_02_084100256 chr1:224165985-224218825 Sample_02_0841 Blood THP-1_untr 256 14 1377 190 0 37 417 LOC101927143,DEGS1,LOC101927164,MIR320B2
SE_02_129800377 chr1:224168341-224206660 Sample_02_1298 Hilar lymph node Hilar lymph node 377 14 1001 125 0 25 417 DEGS1,LOC101927164,LOC101927143
SE_02_054800413 chr1:224168398-224211137 Sample_02_0548 Blood THP-1_24h with EtOH 413 9 1127 147 0 25 417 LOC101927143,DEGS1,LOC101927164,MIR320B2
SE_02_044400950 chr1:224168510-224206982 Sample_02_0444 Bone osteosarcoma tumor P10 950 8 1001 125 0 25 417 DEGS1,LOC101927164,LOC101927143
SE_02_129700415 chr1:224168901-224208452 Sample_02_1297 Lung lung 415 19 1025 134 0 25 417 DEGS1,LOC101927164,MIR320B2,LOC101927143
SE_02_010500095 chr1:224169935-224220525 Sample_02_0105 Skin neonatal_keratinocytes 95 9 1320 182 0 41 417 DEGS1,MIR320B2
SE_02_006300302 chr1:224170047-224220389 Sample_02_0063 Skin Keratinocytes 302 9 1307 179 0 41 417 DEGS1,MIR320B2
SE_02_076400423 chr1:224170589-224187888 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 423 8 422 52 0 11 165 DEGS1,LOC101927164,LOC101927143
SE_02_066400292 chr1:224172596-224187946 Sample_02_0664 Prostate LNCaP_DMSO 292 5 376 46 0 11 165 DEGS1,LOC101927164,LOC101927143
SE_02_067300375 chr1:224172844-224187751 Sample_02_0673 Prostate LNCAP_FA 375 6 365 45 0 11 165 DEGS1,LOC101927164,LOC101927143
SE_02_040400106 chr1:224172987-224206895 Sample_02_0404 Mammary gland ZR-75-1_2 106 5 870 113 0 25 417 DEGS1
SE_02_129600526 chr1:224173816-224206631 Sample_02_1296 Perigastric lymph node Perigastric lymph node 526 16 846 105 0 25 417 DEGS1,LOC101927164,LOC101927143
SE_01_002200184 chr1:224173831-224186771 Sample_01_0022 Prostate C4-2B 184 3 311 33 0 11 165 DEGS1
SE_01_004100972 chr1:224175233-224214711 Sample_01_0041 Skin keratinocyte 972 6 1045 140 0 36 417 DEGS1,MIR320B2
SE_00_002000887 chr1:224175309-224220677 Sample_00_0020 Large intestine large-intestine_108d 887 7 1197 165 0 41 417 DEGS1,MIR320B2
SE_00_003601116 chr1:224175353-224220509 Sample_00_0036 Small intestine small-intestine_108days 1116 10 1193 165 0 41 417 DEGS1,MIR320B2
SE_02_039601159 chr1:224175456-224214993 Sample_02_0396 Skin NHEK-D 1159 10 1051 141 0 36 417 DEGS1,MIR320B2
SE_02_146500418 chr1:224181011-224208282 Sample_02_1465 Ovary CAOV4cis 418 8 715 91 0 25 417 DEGS1,LOC101927164,MIR320B2,LOC101927143
SE_02_140400171 chr1:224182116-224185706 Sample_02_1404 Embryonic kidney HEK293_siBAHD1_WT 171 1 92 4 0 11 165 DEGS1,LOC101927164,LOC101927143
SE_02_148501056 chr1:224182450-224204835 Sample_02_1485 Bone SK-ES-1 1056 5 608 72 0 25 417 DEGS1,LOC101927164,LOC101927143
SE_02_009700849 chr1:224199220-224223842 Sample_02_0097 Foreskin Epidermal-Stem-Cells_shCTRL 849 5 657 96 0 16 0 DEGS1,MIR320B2
SE_02_001001091 chr1:224200723-224225276 Sample_02_0010 Kidney A-498_emptyvector 1091 4 639 93 0 16 0 DEGS1,MIR320B2
Genomic distribution of SEs associated with DEGS1
Genome Browser

The strength of the tissue affected by the gene

Expression of DEGS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)