SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000233937
Gene: CTC-338M12.4 Gene type: lncRNA
Strand: + External links:
Genomic region: chr5:181246507-181272167 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_153200097 chr5:181240132-181250889 Sample_02_1532 Mammary gland MCF10A 97 1 363 51 0 31 388 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_078100646 chr5:181240173-181251072 Sample_02_0781 Lymphoma Pfeiffer_DMSO 646 1 364 51 0 31 385 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_125800436 chr5:181240382-181251032 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 436 1 351 50 0 31 356 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_072300445 chr5:181240519-181250403 Sample_02_0723 Pancreas MIAPaca2 WT 445 1 332 48 0 31 334 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_085200183 chr5:181240760-181249796 Sample_02_0852 Mammary gland MCF7L-P 183 1 305 44 0 31 334 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_115900182 chr5:181240760-181249796 Sample_02_1159 Mammary gland MCF7 182 1 305 44 0 31 334 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_050500692 chr5:181240870-181249597 Sample_02_0505 Esophagus KYSE70_1 692 1 294 41 0 31 334 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_098901271 chr5:181240986-181250551 Sample_02_0989 Kidney kidney cortex_WT 1271 1 314 43 0 31 334 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_058400146 chr5:181240989-181249544 Sample_02_0584 Lung H1299 WT 146 1 287 40 0 31 334 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52,OR2V2
SE_02_057600847 chr5:181241231-181249305 Sample_02_0576 Blood HEL_sgLKB1e2 847 1 270 39 0 31 334 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_089801370 chr5:181241259-181249293 Sample_02_0898 Heart left ventricle_LV1356 1370 1 269 38 0 31 334 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_127301014 chr5:181241357-181249720 Sample_02_1273 Cervix HeLa 1014 1 277 40 0 31 320 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_057900636 chr5:181241447-181249206 Sample_02_0579 Blood HEL_sgNeg2 636 1 259 38 0 31 311 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_070300523 chr5:181241501-181249254 Sample_02_0703 Pancreas PATU8988S WT 523 1 260 38 0 31 304 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_088901468 chr5:181241535-181249027 Sample_02_0889 Heart left ventricle_LV1183 1468 1 253 36 0 31 300 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_109300446 chr5:181241613-181249277 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 446 1 260 38 0 29 288 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_140400025 chr5:181241637-181249253 Sample_02_1404 Embryonic kidney HEK293_siBAHD1_WT 25 1 260 38 0 29 282 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_128000656 chr5:181241668-181249153 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 656 1 254 37 0 29 280 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_064000080 chr5:181241705-181249336 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 80 1 254 39 0 29 277 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_109800682 chr5:181241715-181249113 Sample_02_1098 Blood THP1_DMSO_noPMA 682 1 247 37 0 29 276 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_113000558 chr5:181241718-181249203 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 558 1 249 38 0 29 276 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_137100506 chr5:181241733-181248980 Sample_02_1371 Pancreas Patu899S-untreated 506 1 243 36 0 29 275 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_062300395 chr5:181241746-181249132 Sample_02_0623 Mammary gland TAMR_E2 395 1 246 37 0 29 272 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_102800129 chr5:181241748-181249042 Sample_02_1028 Blood HL-60_WT 129 1 242 36 0 29 272 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_109200415 chr5:181241749-181249404 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 415 1 253 39 0 29 272 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_142700892 chr5:181241778-181248872 Sample_02_1427 Shoulder fibroblast_343 892 1 234 35 0 29 272 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_116800768 chr5:181241796-181248987 Sample_02_1168 Biliary H69_TGF Vehicle_2 768 1 241 36 0 29 272 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_116900825 chr5:181241798-181249106 Sample_02_1169 Biliary H69_TGF beta_16h_2 825 1 243 36 0 29 272 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_140500023 chr5:181241808-181249529 Sample_02_1405 Embryonic kidney HEK293_siBAHD1_W667G_mutant 23 1 254 39 0 29 271 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_098700593 chr5:181241820-181249089 Sample_02_0987 Blood K562_Control_1 593 1 241 36 0 29 268 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_090401428 chr5:181241837-181249128 Sample_02_0904 Heart left ventricle_DCM_LV1028 1428 1 244 37 0 27 265 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_125300675 chr5:181241837-181249482 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 675 1 251 39 0 27 265 GNB2L1,SNORD96A,CTC-338M12.4,SNORD95,TRIM7,LOC102577426,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_133100826 chr5:181241916-181249196 Sample_02_1331 Blood Molm13_CTRL 826 1 245 38 0 26 251 GNB2L1,CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_062400368 chr5:181241962-181249295 Sample_02_0624 Mammary gland TAMR_VEH 368 1 247 38 0 26 248 GNB2L1,CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_01_010400950 chr5:181241965-181248977 Sample_01_0104 Lung upper lobe of left lung 950 1 237 35 0 26 248 GNB2L1,CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,TRIM52,OR2V2,OR2V1
SE_02_108600387 chr5:181241980-181248925 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 387 1 235 34 0 26 247 GNB2L1,CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_062900702 chr5:181242031-181248921 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 702 1 233 34 0 26 241 GNB2L1,CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_148300738 chr5:181242048-181248982 Sample_02_1483 Bone RD-ES 738 1 235 35 0 26 240 GNB2L1,CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_109900590 chr5:181242091-181249246 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 590 1 241 37 0 26 230 GNB2L1,CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_01_010900753 chr5:181242146-181249064 Sample_01_0109 Colon transverse colon_54y 753 1 234 34 0 25 220 GNB2L1,CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_081700534 chr5:181242163-181248900 Sample_02_0817 Ovary Epithelial ovarian cancer 534 1 228 33 0 25 218 GNB2L1,CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_090601296 chr5:181242178-181248622 Sample_02_0906 Heart left ventricle_DCM_LV1072 1296 1 220 32 0 25 215 GNB2L1,CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_135200474 chr5:181242198-181249007 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 474 1 233 34 0 22 212 GNB2L1,CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_01_010101314 chr5:181242239-181248555 Sample_01_0101 Pancreas pancreas_54y 1314 1 218 32 0 20 203 GNB2L1,CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,TRIM52,OR2V1,OR4F3
SE_02_109100332 chr5:181242367-181248254 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 332 1 208 31 0 14 186 GNB2L1,CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_081900956 chr5:181242410-181249073 Sample_02_0819 Ovary Mucinous ovarian cancer 956 1 228 33 0 17 180 GNB2L1,CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_157301214 chr5:181242478-181249237 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 1214 1 233 35 0 17 173 GNB2L1,CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,TRIM52
SE_02_102500589 chr5:181245299-181248882 Sample_02_1025 Esophagus KYSE150 589 1 114 16 0 4 0 CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,GNB2L1,TRIM52
SE_02_132200838 chr5:181245338-181248869 Sample_02_1322 Connective Tissue HT1080_WT 838 1 114 16 0 4 0 CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,GNB2L1,TRIM52
SE_02_064200222 chr5:181245363-181249208 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 222 1 125 19 0 4 0 CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,GNB2L1,TRIM52
SE_02_064300203 chr5:181245448-181249125 Sample_02_0643 Mammary gland MDA-MB-436 203 1 123 18 0 4 0 CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,GNB2L1,TRIM52
SE_02_111400253 chr5:181245452-181249181 Sample_02_1114 Embryonic kidney HEK293 253 1 124 19 0 4 0 CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,GNB2L1,TRIM52
SE_02_061001403 chr5:181245495-181249107 Sample_02_0610 Liposarcoma MLS 1765-92 1403 1 121 17 0 4 0 CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,GNB2L1,TRIM52
SE_02_064501708 chr5:181245560-181248594 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1708 1 103 15 0 4 0 CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,GNB2L1,TRIM52
SE_02_147000931 chr5:181245561-181249073 Sample_02_1470 Umbilical Vein H441 931 1 116 17 0 4 0 CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,GNB2L1,TRIM52
SE_02_133500300 chr5:181245623-181249265 Sample_02_1335 Lung NCI-H1299_wtSMARCA4_Dox 300 1 122 19 0 4 0 CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,GNB2L1,TRIM52
SE_02_066100900 chr5:181246534-181249206 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 900 1 80 10 0 3 0 CTC-338M12.4,SNORD95,SNORD96A,TRIM7,TRIM41,MIR4638,TRIM52-AS1,GNB2L1,TRIM52
Genomic distribution of SEs associated with CTC-338M12.4
Genome Browser

The strength of the tissue affected by the gene

Expression of CTC-338M12.4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)