SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000151292
Gene: CSNK1G3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:123512099-123617045 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_142800419 chr5:123485474-123513588 Sample_02_1428 Shoulder fibroblast_316 419 10 707 39 0 36 208 CSNK1G3
SE_02_142500529 chr5:123495597-123510464 Sample_02_1425 Shoulder fibroblast_384 529 9 374 28 0 22 0 CSNK1G3
SE_02_142600149 chr5:123495742-123513676 Sample_02_1426 Shoulder fibroblast_341 149 9 457 32 0 23 208 CSNK1G3
SE_01_002000665 chr5:123511169-123551580 Sample_01_0020 Blood B-cell 665 5 968 45 1 75 260 CSNK1G3
SE_02_115500467 chr5:123511509-123551124 Sample_02_1155 Lymphoma RL_R1446C_gRNA1_KDAC005 467 8 945 44 1 75 260 CSNK1G3
SE_02_130300702 chr5:123512184-123551445 Sample_02_1303 Lymphoma RL_tazemetostat 702 16 927 43 1 75 211 CSNK1G3
SE_02_023200310 chr5:123513933-123573703 Sample_02_0232 Tonsil ILC3 310 13 1432 78 1 90 127 CSNK1G3
SE_02_023100315 chr5:123542783-123573204 Sample_02_0231 Tonsil ILC1 315 8 741 49 0 41 92 CSNK1G3
SE_02_059400471 chr5:123670598-123721903 Sample_02_0594 iPSC-derived neural progenitors 471 13 1552 101 6 119 0 CSNK1G3
SE_02_141000461 chr5:123670623-123710460 Sample_02_1410 Brain GSC6 461 6 1187 73 4 93 0 CSNK1G3
SE_02_043000565 chr5:123690898-123710237 Sample_02_0430 Kidney 12364284 565 4 503 28 1 41 0 CSNK1G3
SE_02_049800450 chr5:123693627-123718845 Sample_02_0498 Fetal lung IMR90 Senescent_1 450 14 708 51 3 40 0 CSNK1G3
SE_02_020901002 chr5:123694071-123722197 Sample_02_0209 Lung MRC-5_MRC5_1DPT 1002 8 807 54 3 72 0 CSNK1G3
SE_02_044300192 chr5:123694828-123722140 Sample_02_0443 Bone MG63 192 14 787 54 3 68 0 CSNK1G3
SE_02_097600508 chr5:123695986-123709969 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 508 4 365 22 0 33 0 CSNK1G3
SE_02_097200747 chr5:123696087-123710088 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 747 3 361 22 0 33 0 CSNK1G3
SE_02_156600834 chr5:123696138-123719952 Sample_02_1566 Dermal Dermal fibroblast 834 8 679 49 2 37 0 CSNK1G3
SE_01_011501202 chr5:123696188-123709769 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 1202 5 345 20 0 33 0 CSNK1G3
SE_02_080100656 chr5:123696376-123709798 Sample_02_0801 Brain 2235 656 5 338 20 0 33 0 CSNK1G3
SE_02_047400783 chr5:123696436-123719318 Sample_02_0474 Fibroblast umbilical cord Fibroblast 783 8 640 49 2 36 0 CSNK1G3
SE_02_126401468 chr5:123696493-123721739 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1468 6 713 50 2 59 0 CSNK1G3
SE_02_126301230 chr5:123696882-123721161 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1230 5 681 49 2 46 0 CSNK1G3
SE_02_111500280 chr5:123697078-123721807 Sample_02_1115 Liver HepG2 280 10 699 50 2 60 0 CSNK1G3
SE_02_139800864 chr5:123699204-123721986 Sample_02_1398 Bone U2OS_siNC 864 12 646 48 2 60 0 CSNK1G3
SE_02_111300172 chr5:123699311-123722011 Sample_02_1113 Bone U2OS 172 8 641 47 2 60 0 CSNK1G3
SE_02_028100455 chr5:123699360-123722362 Sample_02_0281 Bone U2OS 455 3 654 48 2 70 0 CSNK1G3
SE_02_137801318 chr5:123699540-123720825 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 1318 14 599 46 2 42 0 CSNK1G3
SE_02_126701291 chr5:123699567-123710294 Sample_02_1267 Bone Im-GCT-4072_G34W 1291 4 267 19 0 32 0 CSNK1G3
SE_02_113400458 chr5:123699623-123721954 Sample_02_1134 Bone U2OS-interphase 458 10 631 47 2 59 0 CSNK1G3
SE_02_141000375 chr5:123745055-123758329 Sample_02_1410 Brain GSC6 375 3 375 18 1 81 0 CSNK1G3
SE_02_059400972 chr5:123746007-123758381 Sample_02_0594 iPSC-derived neural progenitors 972 2 346 18 1 73 0 CSNK1G3
SE_02_151700310 chr5:123746084-123758260 Sample_02_1517 Mammary gland non-transformed human mammary epithelial cell 310 4 342 18 1 72 0 CSNK1G3
SE_02_118700754 chr5:123746136-123758199 Sample_02_1187 Brain GBM16 754 4 341 18 1 72 0 CSNK1G3
SE_02_085700875 chr5:123746258-123758642 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 875 2 348 19 1 72 0 CSNK1G3
SE_02_085400689 chr5:123746587-123758190 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 689 2 332 18 1 71 0 CSNK1G3
SE_02_080000300 chr5:123746598-123757665 Sample_02_0800 Brain 3679 300 4 316 16 1 71 0 CSNK1G3
SE_02_097600326 chr5:123746682-123758135 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 326 3 325 17 1 71 0 CSNK1G3
SE_02_093100560 chr5:123746721-123757754 Sample_02_0931 Embryo H9 UTXKO 560 2 315 16 1 71 0 CSNK1G3
SE_02_057201203 chr5:123751004-123756703 Sample_02_0572 Brain LN229_1_mM_glucose 1203 5 172 8 1 62 0 CSNK1G3
SE_02_090500041 chr5:123752090-123761588 Sample_02_0905 Heart left ventricle_DCM_LV1033 41 4 283 18 1 63 0 CSNK1G3
SE_02_093400569 chr5:123752436-123757062 Sample_02_0934 Embryo H7-WT 569 2 137 10 1 61 0 CSNK1G3
SE_02_059400469 chr5:123774910-123817153 Sample_02_0594 iPSC-derived neural progenitors 469 5 1265 47 16 315 0 CSNK1G3
SE_02_141000202 chr5:123775194-123818160 Sample_02_1410 Brain GSC6 202 8 1285 47 16 315 0 CSNK1G3
SE_02_041100050 chr5:123782175-123845755 Sample_02_0411 Liver TTC549_untreated 50 4 1981 77 24 331 0 CSNK1G3
SE_02_041200067 chr5:123782556-123819723 Sample_02_0412 Liver TTC549_Doxycycline 67 2 1095 34 16 293 0 CSNK1G3
SE_01_005700328 chr5:123783089-123836865 Sample_01_0057 Pancreas duct PANC-1 328 5 1648 57 20 322 0 CSNK1G3
SE_02_038200847 chr5:123800441-123820097 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 847 3 585 26 10 225 0 CSNK1G3
SE_00_001000392 chr5:123801684-123816106 Sample_00_0010 Embryo endodermal-cell 392 3 440 20 7 192 0 CSNK1G3
SE_02_075300625 chr5:123801838-123815455 Sample_02_0753 Embryo ES-derived progenitors_FG type 625 7 409 16 6 184 0 CSNK1G3
SE_02_055700452 chr5:123802286-123821497 Sample_02_0557 iPSCs WT hiPSC#1 452 4 588 21 8 218 0 CSNK1G3
SE_02_044000585 chr5:123802642-123816489 Sample_02_0440 Bone LM7 585 9 425 19 6 191 0 CSNK1G3
SE_02_127300125 chr5:123802819-123845201 Sample_02_1273 Cervix HeLa 125 6 1356 59 15 237 0 CSNK1G3
SE_02_085701174 chr5:123803247-123818390 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 1174 2 462 19 8 192 0 CSNK1G3
SE_02_118700834 chr5:123803541-123816543 Sample_02_1187 Brain GBM16 834 3 398 17 5 190 0 CSNK1G3
SE_02_077600777 chr5:123804119-123819840 Sample_02_0776 Pancreas EndoC-BH1 777 4 471 16 7 199 0 CSNK1G3
SE_02_098400275 chr5:123805754-123816519 Sample_02_0984 Brain H3.3K27M-KO_DIPGXIII-C5P5 275 1 331 12 5 183 0 CSNK1G3
SE_02_097600242 chr5:123805882-123816519 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 242 1 329 12 5 183 0 CSNK1G3
SE_02_093100599 chr5:123806102-123816288 Sample_02_0931 Embryo H9 UTXKO 599 4 316 10 5 182 0 CSNK1G3
SE_02_116200410 chr5:123806166-123823469 Sample_02_1162 Stomach YCC11 410 7 540 14 8 208 0 CSNK1G3
SE_02_150301360 chr5:123806228-123821761 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 1360 5 485 12 8 208 0 CSNK1G3
SE_02_055600691 chr5:123806889-123821089 Sample_02_0556 iPSCs BOFS hiPSC cl1 691 4 443 10 7 199 0 CSNK1G3
SE_02_058900194 chr5:123807213-123822491 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 194 9 476 11 8 199 0 CSNK1G3
SE_02_058800298 chr5:123810347-123821978 Sample_02_0588 Cervix HeLa Kyoto_untreated 298 7 358 11 7 127 0 CSNK1G3
SE_02_059000373 chr5:123812628-123821427 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 373 12 281 9 4 94 0 CSNK1G3
SE_02_141000125 chr5:123833195-123885360 Sample_02_1410 Brain GSC6 125 15 1488 44 8 210 0 CSNK1G3
SE_02_085700471 chr5:123833314-123885522 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 471 10 1484 43 7 210 0 CSNK1G3
SE_02_059400483 chr5:123833774-123885439 Sample_02_0594 iPSC-derived neural progenitors 483 11 1468 41 7 209 0 CSNK1G3
SE_02_118700413 chr5:123835422-123883425 Sample_02_1187 Brain GBM16 413 11 1367 39 7 203 0 CSNK1G3
SE_02_042800923 chr5:123845416-123883541 Sample_02_0428 Kidney 12364284_VHL- 923 7 1026 16 3 187 0 CSNK1G3
SE_02_043000267 chr5:123855056-123883523 Sample_02_0430 Kidney 12364284 267 7 751 3 1 179 0 CSNK1G3
SE_02_077600417 chr5:123857905-123884656 Sample_02_0776 Pancreas EndoC-BH1 417 3 697 2 0 174 0 CSNK1G3
SE_02_158100610 chr5:123863965-123883551 Sample_02_1581 Renal OS-LM1 610 7 503 2 0 160 0 CSNK1G3
SE_02_158200509 chr5:123864197-123883603 Sample_02_1582 Renal OS-RC-2 509 6 501 2 0 160 0 CSNK1G3
SE_02_096500455 chr5:123865179-123883302 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 455 6 467 2 0 156 0 CSNK1G3
SE_02_077501978 chr5:123867222-123884756 Sample_02_0775 Pancreas EndoC-BH1_SE 1978 6 442 2 0 154 0 CSNK1G3
SE_02_049400410 chr5:123868128-123884661 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 410 5 404 2 0 150 0 CSNK1G3
SE_02_080000184 chr5:123868412-123883366 Sample_02_0800 Brain 3679 184 5 378 2 0 147 0 CSNK1G3
SE_02_049500629 chr5:123868632-123884173 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 629 3 385 2 0 150 0 CSNK1G3
SE_02_041100214 chr5:123870481-123885718 Sample_02_0411 Liver TTC549_untreated 214 1 367 2 0 107 0 CSNK1G3
SE_02_097300330 chr5:123871174-123883515 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 330 4 297 2 0 100 0 CSNK1G3
SE_02_098200314 chr5:123871181-123883511 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 314 4 297 2 0 100 0 CSNK1G3
SE_02_101701872 chr5:123871236-123883770 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1872 3 297 2 0 100 0 CSNK1G3
SE_02_119300948 chr5:123871317-123883578 Sample_02_1193 Brain GBM27 948 5 290 2 0 100 0 CSNK1G3
SE_02_096900879 chr5:123871400-123883296 Sample_02_0969 Brain H3.3K27M_PL637 879 8 284 2 0 100 0 CSNK1G3
SE_02_041200304 chr5:123871562-123885685 Sample_02_0412 Liver TTC549_Doxycycline 304 3 332 2 0 103 0 CSNK1G3
SE_02_085600333 chr5:123871673-123883313 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 333 2 278 2 0 100 0 CSNK1G3
SE_02_118601089 chr5:123871788-123883364 Sample_02_1186 Brain GBM15 1089 4 279 2 0 100 0 CSNK1G3
SE_02_097200859 chr5:123871860-123883824 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 859 4 286 2 0 100 0 CSNK1G3
SE_02_121100785 chr5:123872165-123883339 Sample_02_1211 Brain GBM21 785 8 269 2 0 100 0 CSNK1G3
SE_02_117200775 chr5:123872542-123880322 Sample_02_1172 Embryo H9 WT 775 1 201 2 0 27 0 CSNK1G3
SE_02_004200405 chr5:123872558-123878161 Sample_02_0042 Embryo endodermal CyT49_ES_D0 405 1 152 2 0 27 0 CSNK1G3
SE_02_085400497 chr5:123872737-123883527 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 497 3 255 2 0 100 0 CSNK1G3
SE_02_068500490 chr5:123872917-123883178 Sample_02_0685 Lung NCI-H1048_no infection 490 4 243 2 0 96 0 CSNK1G3
SE_02_067700386 chr5:123872996-123878648 Sample_02_0677 Embryo H1 hESC-derived neural progenitor cells_Smad_6hr 386 3 152 2 0 27 0 CSNK1G3
SE_02_157200567 chr5:123873093-123879395 Sample_02_1572 iPSCs FiPSC 567 2 167 1 0 27 0 CSNK1G3
SE_02_055700432 chr5:123873105-123886032 Sample_02_0557 iPSCs WT hiPSC#1 432 4 306 1 0 105 0 CSNK1G3
SE_02_157000427 chr5:123873109-123879762 Sample_02_1570 iPSCs EiPSC 427 4 171 1 0 27 0 CSNK1G3
SE_02_156700580 chr5:123873133-123879801 Sample_02_1567 iPSCs CiPSC 580 2 170 1 0 27 0 CSNK1G3
SE_00_001000687 chr5:123873154-123883490 Sample_00_0010 Embryo endodermal-cell 687 2 242 1 0 100 0 CSNK1G3
SE_02_097600405 chr5:123873162-123883240 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 405 4 238 1 0 100 0 CSNK1G3
SE_02_086000463 chr5:123873167-123877887 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 463 1 127 1 0 27 0 CSNK1G3
SE_02_067800524 chr5:123873252-123877978 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 524 7 126 1 0 27 0 CSNK1G3
SE_02_003601157 chr5:123873252-123880149 Sample_02_0036 Embryo H7 1157 2 178 1 0 27 0 CSNK1G3
SE_02_055600168 chr5:123873367-123902789 Sample_02_0556 iPSCs BOFS hiPSC cl1 168 8 747 1 0 146 0 CSNK1G3
SE_02_080100233 chr5:123873389-123883270 Sample_02_0801 Brain 2235 233 4 234 1 0 100 0 CSNK1G3
SE_02_086100327 chr5:123873411-123879231 Sample_02_0861 iPSCs SAH_WT 327 5 150 1 0 27 0 CSNK1G3
SE_00_001200370 chr5:123873633-123877459 Sample_00_0012 Embryo H1-hESC 370 1 102 1 0 25 0 CSNK1G3
SE_02_056000434 chr5:123873728-123879857 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 434 3 156 1 0 27 0 CSNK1G3
SE_02_098000394 chr5:123874312-123882081 Sample_02_0980 Brain BT245 394 3 187 1 0 64 0 CSNK1G3
SE_00_001300368 chr5:123874343-123879782 Sample_00_0013 Embryo H9 368 2 140 1 0 26 0 CSNK1G3
SE_02_019700369 chr5:123914354-123928673 Sample_02_0197 Stomach SNU1750 369 6 403 1 1 33 0 CSNK1G3
Genomic distribution of SEs associated with CSNK1G3
Genome Browser

The strength of the tissue affected by the gene

Expression of CSNK1G3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)