SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000223518
Gene: CSNK1A1P1 Gene type: transcribed_processed_pseudogene
Strand: - External links:
Genomic region: chr15:36798596-36818459 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_092500897 chr15:36753178-36811604 Sample_02_0925 Heart fetal heart_PCW17_12570 897 17 1435 41 3 510 328 C15ORF41,CSNK1A1P1
SE_02_150300397 chr15:36753688-36812625 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 397 26 1437 41 3 504 328 C15ORF41,CSNK1A1P1
SE_02_038200348 chr15:36755683-36833749 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 348 15 1887 42 3 481 555 C15ORF41,CSNK1A1P1
SE_02_008600154 chr15:36763049-36817503 Sample_02_0086 Pancreas CAPAN1 154 4 1264 11 1 371 376 C15ORF41,CSNK1A1P1
SE_02_154900056 chr15:36768339-36814490 Sample_02_1549 Gastrointestinal Stromal GIST-430B 56 10 1066 4 1 351 328 C15ORF41,CSNK1A1P1
SE_02_154700049 chr15:36768652-36814720 Sample_02_1547 Gastrointestinal Stromal GIST-48B 49 19 1059 4 1 351 328 C15ORF41,CSNK1A1P1
SE_02_106700285 chr15:36769841-36809073 Sample_02_1067 Bone SJSA-1 285 10 927 4 1 299 242 C15ORF41,CSNK1A1P1,LOC145845
SE_02_074600942 chr15:36772999-36809962 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 942 14 869 4 1 301 299 C15ORF41,CSNK1A1P1
SE_02_063200059 chr15:36773812-36815173 Sample_02_0632 Gastrointestinal Stromal GIST-48B_DMSO 59 13 927 4 1 347 328 C15ORF41,CSNK1A1P1
SE_02_063400039 chr15:36773913-36814549 Sample_02_0634 Gastrointestinal Stromal GIST-48B_JQ1 39 12 919 4 1 346 328 C15ORF41,CSNK1A1P1
SE_02_063300093 chr15:36774552-36814608 Sample_02_0633 Gastrointestinal Stromal GIST-48B_Imatinib 93 16 900 3 1 345 328 C15ORF41,CSNK1A1P1
SE_02_060500835 chr15:36775131-36811222 Sample_02_0605 Skin Skin Fibroblast_DMSO 835 13 837 3 1 303 328 C15ORF41,CSNK1A1P1
SE_02_060601006 chr15:36775210-36811254 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 1006 9 837 3 1 301 328 C15ORF41,CSNK1A1P1
SE_02_149800372 chr15:36775430-36810588 Sample_02_1498 Brain SHEP-21N_DOX_2h 372 11 819 3 1 287 328 C15ORF41,CSNK1A1P1,LOC145845
SE_02_150200365 chr15:36776981-36813149 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 365 11 831 3 1 306 328 C15ORF41,CSNK1A1P1
SE_02_154600125 chr15:36783582-36813009 Sample_02_1546 Gastrointestinal Stromal GIST-430/654 125 13 667 1 1 239 328 C15ORF41,CSNK1A1P1
SE_02_113200216 chr15:36789848-36846438 Sample_02_1132 Pancreas KLM1 wt 216 23 1316 3 1 365 555 C15ORF41,CSNK1A1P1,LOC145845
SE_02_075701201 chr15:36790134-36812629 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 1201 7 495 0 1 203 328 C15ORF41,CSNK1A1P1,LOC145845
SE_02_004001223 chr15:36790487-36812889 Sample_02_0040 Embryo PFG 1223 4 497 0 1 204 328 C15ORF41,CSNK1A1P1
SE_02_049300597 chr15:36790488-36812899 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 597 6 497 0 1 204 328 C15ORF41,CSNK1A1P1,LOC145845
SE_02_124600389 chr15:36792056-36812297 Sample_02_1246 Brain LAN5_ATRA 389 8 449 0 1 185 328 C15ORF41,CSNK1A1P1
SE_02_150100824 chr15:36795178-36810952 Sample_02_1501 Brain SHEP-21N_NOSPIKE 824 10 333 0 0 151 328 C15ORF41,CSNK1A1P1
SE_02_036100439 chr15:36795660-36815375 Sample_02_0361 Colon HT29_DMSO 439 5 403 0 0 187 328 C15ORF41,CSNK1A1P1
SE_02_150700474 chr15:36795761-36810584 Sample_02_1507 Brain SHEP-21N_DOX_24h 474 5 319 0 0 150 328 C15ORF41,CSNK1A1P1,LOC145845
SE_02_032500950 chr15:36802919-36815665 Sample_02_0325 Liver hepatocytes_d1 950 3 250 0 0 118 232 C15ORF41,CSNK1A1P1
SE_02_060501277 chr15:36827421-36845555 Sample_02_0605 Skin Skin Fibroblast_DMSO 1277 7 453 3 0 128 0 LOC145845,CSNK1A1P1
Genomic distribution of SEs associated with CSNK1A1P1
Genome Browser

The strength of the tissue affected by the gene

Expression of CSNK1A1P1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)