SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000009307
Gene: CSDE1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:114716913-114758676 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_009700599 chr1:114720453-114758751 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 599 11 932 55 1 205 700 CSDE1,NRAS,AMPD1,SIKE1
SE_02_148200596 chr1:114737158-114758866 Sample_02_1482 Bone POE 596 6 525 40 0 112 267 CSDE1,NRAS,AMPD1,SIKE1
SE_01_009400672 chr1:114737921-114758724 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 672 1 506 39 0 86 222 CSDE1,NRAS,AMPD1,SIKE1
SE_02_050800119 chr1:114740266-114758854 Sample_02_0508 Esophagus TT_1 119 4 455 36 0 68 161 CSDE1,NRAS,AMPD1,SIKE1
SE_02_051800119 chr1:114740266-114758854 Sample_02_0518 Esophagus TT_Esophagus carcinoma 119 4 455 36 0 68 161 CSDE1,NRAS,AMPD1,SIKE1
SE_02_145200806 chr1:114744802-114758589 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 806 2 335 29 0 59 123 CSDE1,NRAS,AMPD1,SIKE1
SE_01_011500919 chr1:114744934-114758462 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 919 7 332 29 0 59 123 CSDE1,NRAS,AMPD1,SIKE1
SE_02_145500838 chr1:114745102-114758579 Sample_02_1455 Arter pulmonary arterial smooth muscle cells_PAH2_sialdh1a3 838 3 326 28 0 59 123 CSDE1,NRAS,AMPD1,SIKE1
SE_02_093700866 chr1:114747629-114759191 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 866 4 280 21 0 59 123 CSDE1,NRAS,SIKE1
SE_02_064500769 chr1:114750764-114758831 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 769 3 197 16 0 39 87 CSDE1,NRAS,SIKE1
SE_02_064901051 chr1:114750901-114758029 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 1051 3 176 14 0 34 58 CSDE1,NRAS,SIKE1
SE_02_065000644 chr1:114751198-114758480 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 644 3 180 14 0 39 87 CSDE1,NRAS,SIKE1
SE_02_122401007 chr1:114751630-114758818 Sample_02_1224 Bone marrow normal plasma cell 1007 1 179 14 0 39 87 CSDE1,NRAS,SIKE1
SE_00_000900771 chr1:114753957-114758990 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 771 1 130 9 0 39 87 CSDE1,SIKE1,NRAS
SE_02_024600246 chr1:114754381-114759249 Sample_02_0246 Mammary gland MCF-7_estradiol 246 1 126 9 0 39 87 CSDE1,SIKE1,NRAS
SE_02_006400743 chr1:114754805-114758972 Sample_02_0064 Embryo DN-Early_G1 743 1 98 7 0 39 87 CSDE1,SIKE1,NRAS
SE_00_002700854 chr1:114754945-114758965 Sample_00_0027 Blood natural-killer-cell 854 1 94 7 0 39 87 CSDE1,SIKE1,NRAS
SE_02_062500069 chr1:114755164-114758853 Sample_02_0625 Mammary gland WS8_4OHT 69 1 91 7 0 39 87 CSDE1,NRAS,SIKE1
SE_02_062600098 chr1:114755306-114758780 Sample_02_0626 Mammary gland WS8_E2 98 1 83 7 0 39 87 CSDE1,NRAS,SIKE1
SE_02_062700079 chr1:114755388-114758838 Sample_02_0627 Mammary gland WS8_VEH 79 1 83 6 0 39 87 CSDE1,NRAS,SIKE1
SE_02_064400695 chr1:114755498-114758091 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 695 1 66 6 0 35 65 CSDE1,NRAS,SIKE1
SE_02_064600642 chr1:114755640-114758574 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 642 1 74 6 0 39 87 CSDE1,NRAS,SIKE1
SE_02_123000577 chr1:114755824-114758561 Sample_02_1230 Lung PC9 577 1 70 6 0 39 87 CSDE1,NRAS,SIKE1
Genomic distribution of SEs associated with CSDE1
Genome Browser

The strength of the tissue affected by the gene

Expression of CSDE1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)