SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000169583
Gene: CLIC3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr9:136994608-136996568 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_082601433 chr9:136986457-137008903 Sample_02_0826 Stomach gastric tumor 1433 8 734 58 7 78 1494 C9ORF142,CLIC3,ABCA2,LCNL1,FBXW5,ENTPD2,C9ORF139,FUT7,NPDC1,LCN12,C8G,PTGDS
SE_02_077502196 chr9:136986676-137009635 Sample_02_0775 Pancreas EndoC-BH1_SE 2196 10 754 58 7 88 1726 C9ORF142,CLIC3,ABCA2,LCNL1,FBXW5,ENTPD2,C9ORF139,FUT7,NPDC1,LCN12,C8G,PTGDS
SE_02_146500482 chr9:136989837-137005352 Sample_02_1465 Ovary CAOV4cis 482 3 525 39 4 52 1028 C9ORF142,CLIC3,LCNL1,ABCA2,FBXW5,ENTPD2,C9ORF139,FUT7,NPDC1,LCN12,C8G,PTGDS
SE_00_003100591 chr9:136990488-137002772 Sample_00_0031 Placenta placenta 591 1 405 29 2 52 1028 C9ORF142,CLIC3,C8G,PTGDS,LCNL1,ABCA2,C9ORF139,FUT7,NPDC1,FBXW5,LCN12,C9orf139,C9orf141,C9orf172,DPP7,ENTPD2,AN1B1,PHPT1,SAPCD2
SE_02_115900313 chr9:136990656-136998877 Sample_02_1159 Mammary gland MCF7 313 1 266 15 1 52 1028 C9ORF142,CLIC3,LCNL1,ABCA2,FBXW5,C9ORF139,FUT7,NPDC1,LCN12,C8G,PTGDS
SE_02_085200312 chr9:136990656-136998880 Sample_02_0852 Mammary gland MCF7L-P 312 1 266 15 1 52 1028 C9ORF142,CLIC3,LCNL1,ABCA2,FBXW5,C9ORF139,FUT7,NPDC1,LCN12,C8G,PTGDS
SE_02_081000134 chr9:136991064-136997963 Sample_02_0810 Mammary gland T47D noSerum 134 1 216 11 0 52 1028 C9ORF142,CLIC3,LCNL1,ABCA2,FBXW5,C9ORF139,FUT7,NPDC1,LCN12,C8G,PTGDS
SE_02_108600461 chr9:136992350-136998010 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 461 1 183 6 0 51 980 C9ORF142,CLIC3,LCNL1,ABCA2,FBXW5,C9ORF139,FUT7,NPDC1,LCN12,C8G,PTGDS
SE_02_109200552 chr9:136992380-136998011 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 552 1 183 6 0 51 974 C9ORF142,CLIC3,LCNL1,ABCA2,FBXW5,C9ORF139,FUT7,NPDC1,LCN12,C8G,PTGDS
SE_02_109000402 chr9:136992387-136997774 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 402 1 176 6 0 51 973 C9ORF142,CLIC3,LCNL1,ABCA2,FBXW5,C9ORF139,FUT7,NPDC1,LCN12,C8G,PTGDS
SE_02_109100380 chr9:136992402-136997891 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 380 1 180 6 0 51 964 C9ORF142,CLIC3,LCNL1,ABCA2,FBXW5,C9ORF139,FUT7,NPDC1,LCN12,C8G,PTGDS
SE_02_104901538 chr9:136992405-136998651 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1538 1 213 9 1 51 962 C9ORF142,CLIC3,LCNL1,ABCA2,FBXW5,C9ORF139,FUT7,NPDC1,LCN12,C8G,PTGDS
SE_02_144000148 chr9:136993743-137000880 Sample_02_1440 Cytotrophoblast Cytotrophoblast 148 2 248 13 1 31 621 C9ORF142,CLIC3,LCNL1,ABCA2,FBXW5,C9ORF139,FUT7,NPDC1,LCN12,C8G,PTGDS
SE_02_093001499 chr9:136994508-137002124 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1499 3 274 19 2 23 498 CLIC3,LCNL1,ABCA2,C9ORF142,FBXW5,C9ORF139,FUT7,NPDC1,LCN12,C8G,PTGDS
Genomic distribution of SEs associated with CLIC3
Genome Browser

The strength of the tissue affected by the gene

Expression of CLIC3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)