SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000111642
Gene: CHD4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr12:6570082-6614524 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_155300516 chr12:6590691-6639228 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 516 13 1348 86 5 404 2446 ACRBP,CHD4,LPAR5,IFFO1,ING4,SCARNA11,NOP2
SE_02_104800394 chr12:6590909-6644617 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 394 17 1475 90 5 426 2807 ACRBP,CHD4,LPAR5,IFFO1,ZNF384,ING4,SCARNA11,NOP2
SE_02_021100272 chr12:6591695-6619412 Sample_02_0211 Lung MRC-5_NFD_1DPT 272 8 770 47 4 333 1516 LPAR5,CHD4,IFFO1,ACRBP,NOP2,ING4,SCARNA11
SE_02_021000771 chr12:6592107-6619394 Sample_02_0210 Lung MRC-5_N_1DPT 771 6 765 47 4 329 1466 LPAR5,CHD4,IFFO1,ACRBP,NOP2,ING4,SCARNA11
SE_01_002100418 chr12:6592258-6617990 Sample_01_0021 Skin bipolar-neuron 418 4 720 46 4 329 1357 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_046601008 chr12:6592894-6620739 Sample_02_0466 Adipose visceral adipocytes 1008 8 783 47 4 329 1620 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_067401017 chr12:6596031-6614725 Sample_02_0674 Endometrium E1_FA 1017 5 534 38 4 294 978 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_067201176 chr12:6596071-6614907 Sample_02_0672 Endometrium endometrium cancer_DSG 1176 4 534 38 4 294 972 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_098901642 chr12:6596401-6618199 Sample_02_0989 Kidney kidney cortex_WT 1642 9 613 41 4 295 944 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_077500461 chr12:6596426-6633771 Sample_02_0775 Pancreas EndoC-BH1_SE 461 13 1039 64 5 342 1527 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_046501394 chr12:6599099-6620788 Sample_02_0465 Adipose subcutaneous adipocytes 1394 9 576 35 4 288 1162 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_01_007200606 chr12:6599653-6616364 Sample_01_0072 Breast epithelium breast-epithelium 606 4 454 31 4 273 808 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_116801151 chr12:6600222-6615024 Sample_02_1168 Biliary H69_TGF Vehicle_2 1151 3 396 26 3 267 701 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_117300560 chr12:6601374-6624372 Sample_02_1173 Brain GBM01 560 13 616 35 3 285 991 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_028400738 chr12:6601376-6627277 Sample_02_0284 Pelvis patient 119 738 5 711 41 4 288 990 LPAR5,CHD4,IFFO1,ACRBP,NOP2,ING4,SCARNA11
SE_02_110700608 chr12:6601731-6617099 Sample_02_1107 Brain SK-N-AS 608 6 432 29 3 239 440 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_01_008800979 chr12:6601896-6617950 Sample_01_0088 Tibial nerve tibial-nerve 979 4 439 29 3 245 426 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_110600434 chr12:6601970-6633728 Sample_02_1106 Brain NGP 434 9 867 52 4 292 1003 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_027800377 chr12:6602012-6621303 Sample_02_0278 Retina FW24 377 6 520 30 3 274 842 LPAR5,CHD4,IFFO1,ACRBP,NOP2,ING4,SCARNA11
SE_02_044500925 chr12:6602047-6617357 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 925 4 423 28 3 237 408 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_123900549 chr12:6602050-6615129 Sample_02_1239 Skin Waga_virus_positive 549 3 358 23 3 237 408 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_044600048 chr12:6602056-6618483 Sample_02_0446 Bone osteosarcoma tumor P2 48 4 448 28 3 243 408 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_044700083 chr12:6602087-6616192 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 83 4 392 26 3 237 405 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_120501287 chr12:6602092-6617150 Sample_02_1205 Brain NB3 1287 6 420 28 3 237 405 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_121200390 chr12:6602104-6618279 Sample_02_1212 Brain GBM30 390 4 438 28 3 243 403 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_104000236 chr12:6602112-6634219 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 236 18 875 51 4 289 983 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_095500304 chr12:6602117-6616154 Sample_02_0955 Brain IDH1_2469 304 5 389 26 3 236 399 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_118100498 chr12:6602124-6618362 Sample_02_1181 Brain GBM10 498 8 441 28 3 241 398 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_003100772 chr12:6602134-6628641 Sample_02_0031 Haematopoietic and lymphoid tissue blood Jurkat 772 4 722 41 4 270 889 LPAR5,CHD4,IFFO1,ACRBP,NOP2,ING4,SCARNA11
SE_02_101701008 chr12:6602139-6620873 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1008 4 504 30 3 256 752 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_097200870 chr12:6602141-6618333 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 870 7 439 28 3 236 391 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_01_007800913 chr12:6602146-6617888 Sample_01_0078 Heart left ventricle heart-left-ventricle 913 3 427 28 3 230 391 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_074601150 chr12:6602151-6616220 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 1150 8 388 26 3 230 387 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_108301041 chr12:6602157-6620921 Sample_02_1083 Macula macula 1041 5 505 30 3 257 753 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_090401401 chr12:6602164-6624225 Sample_02_0904 Heart left ventricle_DCM_LV1028 1401 8 582 34 3 267 877 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_147900176 chr12:6602178-6628446 Sample_02_1479 Bone EW-7 176 5 711 41 4 270 872 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_006000497 chr12:6602193-6628652 Sample_02_0060 Haematopoietic and lymphoid tissue blood WT-11bp/Jurkat 497 4 720 41 4 270 870 LPAR5,CHD4,IFFO1,ACRBP,NOP2,ING4,SCARNA11
SE_02_082601777 chr12:6602203-6613675 Sample_02_0826 Stomach gastric tumor 1777 6 320 22 3 193 376 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_097900764 chr12:6602212-6624795 Sample_02_0979 Brain JN14-BS1_H3.3K27M 764 4 597 35 3 266 870 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_142000069 chr12:6602214-6615039 Sample_02_1420 Brain DIPG007 69 2 346 23 3 229 376 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_01_008501259 chr12:6602231-6616570 Sample_01_0085 Stomach stomach 1259 2 397 28 3 229 374 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_120200386 chr12:6602238-6620651 Sample_02_1202 Brain GBM38 386 5 494 29 3 243 687 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_01_007700666 chr12:6602244-6616529 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 666 3 396 28 3 229 373 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_01_008900753 chr12:6602245-6618206 Sample_01_0089 Transverse colon transverse-colon 753 4 430 28 3 235 373 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_01_009301146 chr12:6602292-6624217 Sample_01_0093 Aorta ascending aorta 1146 7 577 34 3 266 858 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_01_010400942 chr12:6602307-6615119 Sample_01_0104 Lung upper lobe of left lung 942 4 346 23 3 229 361 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_117600382 chr12:6602322-6618294 Sample_02_1176 Brain GBM04 382 5 429 28 3 235 358 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_096500686 chr12:6602325-6618557 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 686 5 437 28 3 235 358 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_096700258 chr12:6602355-6633883 Sample_02_0967 Brain H3.3K27M_JN57 258 12 849 51 4 282 934 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_117900612 chr12:6602366-6618283 Sample_02_1179 Brain GBM08 612 5 425 28 3 232 350 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_119300716 chr12:6602397-6623244 Sample_02_1193 Brain GBM27 716 8 553 34 3 262 836 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_123700556 chr12:6602414-6614727 Sample_02_1237 Skin MKL2_virus_positive 556 4 333 23 3 224 339 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_01_007300818 chr12:6602433-6624459 Sample_01_0073 Coronary artery coronary-artery 818 5 580 34 3 261 831 LPAR5,CHD4,IFFO1,ACRBP,NOP2,ING4,SCARNA11
SE_02_058600456 chr12:6602436-6625392 Sample_02_0586 Chordal patient-derived chordoma MGH_4 456 10 612 37 4 261 831 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_113600248 chr12:6602442-6626003 Sample_02_1136 Bone U2OS-anaphase/telophase 248 7 647 38 4 261 831 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_01_006900845 chr12:6602444-6624606 Sample_01_0069 Adrenal gland adrenal-gland 845 4 582 34 3 261 831 LPAR5,CHD4,IFFO1,ACRBP,NOP2,ING4,SCARNA11
SE_01_009200636 chr12:6602446-6624297 Sample_01_0092 Vagina vagina 636 4 575 34 3 261 831 LPAR5,CHD4,IFFO1,ACRBP,NOP2,ING4,SCARNA11
SE_02_005800495 chr12:6602463-6628363 Sample_02_0058 Haematopoietic and lymphoid tissue blood WT/Jurkat-11bp 495 5 698 41 4 263 829 LPAR5,CHD4,IFFO1,ACRBP,NOP2,ING4,SCARNA11
SE_02_118601162 chr12:6602469-6624298 Sample_02_1186 Brain GBM15 1162 6 574 34 3 260 829 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_01_007500943 chr12:6602476-6618185 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 943 4 420 28 3 229 334 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_027700334 chr12:6602488-6621620 Sample_02_0277 Retina FW18 334 3 510 30 3 260 819 LPAR5,CHD4,IFFO1,ACRBP,NOP2,ING4,SCARNA11
SE_02_101600828 chr12:6602492-6616204 Sample_02_1016 Embryo H9_Mesendoderm_24h 828 4 376 26 3 223 332 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_003400260 chr12:6602493-6618872 Sample_02_0034 Peripheral blood CUTLL1_GSI 260 4 448 28 3 229 377 LPAR5,CHD4,IFFO1,ACRBP,NOP2,ING4,SCARNA11
SE_02_003500310 chr12:6602495-6616463 Sample_02_0035 Peripheral blood CUTLL1_GSI_wash 310 3 383 27 3 223 332 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_044400410 chr12:6602522-6617098 Sample_02_0444 Bone osteosarcoma tumor P10 410 7 400 28 3 223 328 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_092400805 chr12:6602542-6616114 Sample_02_0924 Heart fetal heart_PCW10_12569 805 6 370 26 3 223 326 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_108200733 chr12:6602563-6618402 Sample_02_1082 Retina retina 733 5 424 28 3 229 322 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_085700433 chr12:6602579-6617800 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 433 4 410 28 3 223 322 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_096900373 chr12:6602585-6620789 Sample_02_0969 Brain H3.3K27M_PL637 373 6 483 29 3 238 663 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_121300830 chr12:6602589-6625333 Sample_02_1213 Brain GBM31 830 6 604 37 4 260 812 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_118300601 chr12:6602610-6624129 Sample_02_1183 Brain GBM12 601 7 562 34 3 260 809 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_027500509 chr12:6602618-6621641 Sample_02_0275 Retina FW14 509 4 502 30 3 260 802 LPAR5,CHD4,IFFO1,ACRBP,NOP2,ING4,SCARNA11
SE_02_058400705 chr12:6602624-6616330 Sample_02_0584 Lung H1299 WT 705 4 369 26 3 223 313 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_092300871 chr12:6602653-6617293 Sample_02_0923 Heart fetal heart_PCW10_12522 871 7 395 28 3 223 310 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_059100513 chr12:6602662-6628396 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 513 9 688 41 4 263 804 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_126900763 chr12:6602675-6615041 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 763 2 325 23 3 223 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_046300447 chr12:6602676-6614635 Sample_02_0463 Blood OCI-AML3 cells 447 10 320 23 3 223 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_061300928 chr12:6602691-6620874 Sample_02_0613 Liposarcoma MLPS_T1 928 6 481 30 3 249 671 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_147600805 chr12:6602692-6623599 Sample_02_1476 Bone EW-1 805 6 547 34 3 260 803 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_030400443 chr12:6602702-6616568 Sample_02_0304 Neuroblastoma N206 443 2 376 28 3 223 309 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_112900734 chr12:6602724-6623071 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 734 11 534 33 3 259 803 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_031900710 chr12:6602751-6616594 Sample_02_0319 Neuroblastoma NB-EBc1 710 3 375 28 3 221 309 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_096600644 chr12:6602753-6618301 Sample_02_0966 Brain H3.3K27M_JN29-BS3 644 5 414 28 3 227 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_01_009100830 chr12:6602768-6615452 Sample_01_0091 Uterus uterus 830 3 347 26 3 221 309 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_01_010900914 chr12:6602792-6615307 Sample_01_0109 Colon transverse colon_54y 914 5 340 25 3 221 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_106400776 chr12:6602823-6618375 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 776 5 414 28 3 227 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_110400428 chr12:6602841-6618342 Sample_02_1104 Brain NB-69 428 5 414 28 3 227 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_091501247 chr12:6602851-6616327 Sample_02_0915 Heart left ventricle_DCM_LV1371 1247 6 364 26 3 221 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_055300424 chr12:6602856-6623383 Sample_02_0553 Other HSSY2 shCt 424 12 539 34 3 258 803 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_118900281 chr12:6602883-6618289 Sample_02_1189 Brain GBM22 281 3 411 28 3 227 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_096200620 chr12:6602917-6618917 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 620 5 436 28 3 227 361 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_129200329 chr12:6602926-6614603 Sample_02_1292 Lung JHU-LX110-SCLC PDX 329 4 314 23 3 221 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_132100669 chr12:6602953-6614939 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 669 2 318 23 3 221 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_085400597 chr12:6602976-6615073 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 597 3 322 23 3 221 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_092100763 chr12:6602978-6616322 Sample_02_0921 Heart embryonic heart_CS22 763 7 361 26 3 221 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_092201003 chr12:6602989-6616212 Sample_02_0922 Heart fetal heart_PCW10_12434 1003 6 360 26 3 221 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_123500281 chr12:6602989-6618366 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 281 6 410 28 3 227 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_068600348 chr12:6602993-6617790 Sample_02_0686 Lung NCI-H128_no infection 348 5 398 28 3 221 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_128300320 chr12:6602998-6614828 Sample_02_1283 Lung NCI-H2107_p8-15 320 5 315 23 3 221 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_132000613 chr12:6603002-6614801 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 613 2 315 23 3 221 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_059300462 chr12:6603008-6628348 Sample_02_0593 Fetal spleenocytes fetal naive T cells 462 6 681 41 4 261 803 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_121100491 chr12:6603028-6624424 Sample_02_1211 Brain GBM21 491 4 561 34 3 258 803 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_006800726 chr12:6603029-6614700 Sample_02_0068 Skin A375_DMSO 726 2 314 23 3 221 309 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_102900909 chr12:6603029-6616310 Sample_02_1029 Colon HCT116 909 7 359 26 3 221 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_132200880 chr12:6603039-6614681 Sample_02_1322 Connective Tissue HT1080_WT 880 2 314 23 3 221 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_119200679 chr12:6603041-6624246 Sample_02_1192 Brain GBM26 679 4 553 34 3 258 803 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_096000300 chr12:6603051-6618316 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 300 5 408 28 3 227 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_143301640 chr12:6603056-6620354 Sample_02_1433 Bone A673 STAG2 null 1640 9 461 29 3 229 570 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_131900394 chr12:6603057-6614434 Sample_02_1319 Connective Tissue HT1080_DDIT3 394 3 309 23 3 218 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_097800408 chr12:6603058-6614698 Sample_02_0978 Brain 2168_IDH1 408 2 312 23 3 221 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_126200432 chr12:6603059-6613419 Sample_02_1262 Bone Im-GCT-3504_G34W 432 2 284 22 3 183 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_121000592 chr12:6603073-6614891 Sample_02_1210 Brain GBM17 592 4 313 23 3 221 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_120300778 chr12:6603077-6625075 Sample_02_1203 Brain NB1 778 6 579 35 3 258 803 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2,PIANP,GAPDH,MRPL51
SE_02_119800580 chr12:6603082-6618216 Sample_02_1198 Brain GBM34 580 5 403 28 3 227 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_01_010101413 chr12:6603095-6617880 Sample_01_0101 Pancreas pancreas_54y 1413 4 396 28 3 221 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_110900582 chr12:6603100-6616279 Sample_02_1109 Brain SK-N-FI 582 5 357 26 3 221 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_117500788 chr12:6603108-6624122 Sample_02_1175 Brain GBM03 788 7 550 34 3 258 803 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_126800494 chr12:6603115-6614624 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 494 3 310 23 3 221 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_00_005501193 chr12:6603129-6615055 Sample_00_0055 Spleen spleen 34y 1193 5 317 23 3 220 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_101501011 chr12:6603143-6620967 Sample_02_1015 Embryo H9_ Undifferentiated 1011 4 475 30 3 249 680 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_068700547 chr12:6603145-6628512 Sample_02_0687 Lung NCI-H146_no infection 547 8 685 41 4 259 803 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_093100605 chr12:6603148-6614765 Sample_02_0931 Embryo H9 UTXKO 605 3 312 23 3 219 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_148900144 chr12:6603149-6616232 Sample_02_1489 Bone TC-106 144 4 356 26 3 219 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_00_004600965 chr12:6603151-6618230 Sample_00_0046 Heart right ventricle_34y 965 5 403 28 3 225 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_148300290 chr12:6603154-6633748 Sample_02_1483 Bone RD-ES 290 8 826 51 4 272 892 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_111500940 chr12:6603157-6614816 Sample_02_1115 Liver HepG2 940 4 311 23 3 219 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_139300223 chr12:6603180-6633699 Sample_02_1393 Lymph node anaplastic large cell lymphoma cells_ALK+#54 223 6 825 51 4 271 892 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_105800986 chr12:6603222-6628299 Sample_02_1058 Bone A673_SA2 Rescue 986 7 675 41 4 257 803 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_132700393 chr12:6603232-6614372 Sample_02_1327 Hindbrain Hindbrain derived neural stem cells_NS13_H3.3K27M_WT 393 3 304 23 3 213 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_074400454 chr12:6603251-6614888 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 454 3 310 23 3 216 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_067900526 chr12:6603295-6614691 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 526 2 309 23 3 216 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_074501018 chr12:6603355-6614663 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 1018 2 308 23 3 215 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_061700723 chr12:6603366-6623793 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 723 7 538 34 3 252 803 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_141500690 chr12:6603416-6616429 Sample_02_1415 Brain DIPGIV 690 4 357 27 3 213 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_031300329 chr12:6603716-6616651 Sample_02_0313 Neuroblastoma SK-N-DZ 329 2 355 27 3 205 309 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_112100979 chr12:6603738-6614987 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 979 5 301 22 3 205 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2,GAPDH,ZNF384
SE_02_112500446 chr12:6603821-6614857 Sample_02_1125 Adipose visceral adipose_CS_VC06 446 5 298 21 3 204 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_01_011400486 chr12:6603942-6614986 Sample_01_0114 Colon HCT116_encode 486 3 295 21 3 204 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_093500587 chr12:6603989-6614987 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 587 4 294 21 3 204 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_082700530 chr12:6604170-6621978 Sample_02_0827 Stomach normal gastric 530 5 469 28 3 241 803 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_00_004200764 chr12:6604191-6615275 Sample_00_0042 Stomach stomach_30y 764 3 301 23 3 204 309 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_120400857 chr12:6604218-6624844 Sample_02_1204 Brain NB2 857 5 538 32 3 241 803 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_00_004500428 chr12:6604291-6616569 Sample_00_0045 Thymus thymus 428 3 333 25 3 204 309 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11,CD27,COPS7A,LAG3,NCAPD2,TAPBPL,VAP1,ZNF384
SE_01_004400729 chr12:6604817-6616689 Sample_01_0044 Haematopoietic and lymphoid tissue Loucy 729 3 322 24 2 198 309 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_037300376 chr12:6605278-6618634 Sample_02_0373 Skeletal muscle RMS206 376 4 355 23 2 204 309 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_001900285 chr12:6605285-6618405 Sample_02_0019 Embryo Neural crest cells 285 5 342 23 2 204 309 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_102500973 chr12:6605343-6614733 Sample_02_1025 Esophagus KYSE150 973 2 247 18 2 198 309 CHD4,LPAR5,IFFO1,ING4,ACRBP,SCARNA11,NOP2
SE_02_003900431 chr12:6605781-6616424 Sample_02_0039 Embryo AFG 431 3 282 21 1 193 309 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_033000255 chr12:6605794-6616556 Sample_02_0330 Endoderm MHG 255 3 287 22 1 193 309 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_004001360 chr12:6605902-6615195 Sample_02_0040 Embryo PFG 1360 2 241 18 1 193 309 CHD4,IFFO1,ACRBP,LPAR5,NOP2,ING4,SCARNA11
SE_02_077200264 chr12:6607607-6614856 Sample_02_0772 Prostate 22Rv1_delSite1_Clone11/12-F6 264 3 181 14 1 108 0 LPAR5,CHD4,ING4,ACRBP,SCARNA11,NOP2
SE_02_001800396 chr12:6610652-6615134 Sample_02_0018 Embryo NEC 396 1 110 10 1 81 0 LPAR5,ACRBP,SCARNA11,NOP2,ING4,CHD4
SE_00_004800228 chr12:6611035-6614746 Sample_00_0048 Embryo neuronal stem cell originated from H1 228 5 84 8 1 79 0 LPAR5,CHD4,ING4,ACRBP,SCARNA11,NOP2
SE_02_068100532 chr12:6611365-6620445 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 532 5 226 12 1 90 279 LPAR5,CHD4,ING4,ACRBP,SCARNA11,NOP2
SE_02_004400364 chr12:6611808-6615134 Sample_02_0044 Embryo endodermal CyT49_ES_D5 364 1 77 6 0 79 0 LPAR5,ACRBP,SCARNA11,NOP2,ING4,CHD4
SE_02_055900961 chr12:6612289-6614835 Sample_02_0559 iPSCs FX52 iPSCs dC-T 961 2 58 4 0 71 0 LPAR5,CHD4,ING4,ACRBP,SCARNA11,NOP2
SE_02_055800573 chr12:6612406-6614768 Sample_02_0558 iPSCs FX52 iPSCs mock 573 2 56 2 0 71 0 LPAR5,CHD4,ING4,ACRBP,SCARNA11,NOP2
Genomic distribution of SEs associated with CHD4
Genome Browser

The strength of the tissue affected by the gene

Expression of CHD4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)