SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000260785
Gene: CASC17 Gene type: lncRNA
Strand: - External links:
Genomic region: chr17:71097774-71202203 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_131100626 chr17:70891160-70930295 Sample_02_1311 Bone marrow HDMSCs 626 10 1189 20 5 52 0 CASC17
SE_02_080200148 chr17:70977891-70993668 Sample_02_0802 Brain 3094 148 5 464 3 6 37 0 CASC17
SE_02_080000259 chr17:70985218-70992989 Sample_02_0800 Brain 3679 259 3 218 0 2 20 0 CASC17,KCNJ2
SE_02_141000895 chr17:70985647-70993935 Sample_02_1410 Brain GSC6 895 6 233 0 2 27 0 CASC17,KCNJ2
SE_02_126300787 chr17:71162698-71209368 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 787 9 1374 0 14 273 70 CASC17
SE_02_126700958 chr17:71163109-71190355 Sample_02_1267 Bone Im-GCT-4072_G34W 958 5 827 0 6 173 38 CASC17
SE_02_126401279 chr17:71171351-71190917 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1279 9 617 0 6 117 38 CASC17,LINC01152
SE_02_150500316 chr17:71176360-71190905 Sample_02_1505 Brain SHEP with tetracycline inducible MYC_DOX_2HR 316 9 468 0 4 104 38 CASC17
SE_02_150600352 chr17:71176450-71190514 Sample_02_1506 Brain SHEP with tetracycline inducible MYC_DOX_6HR 352 8 458 0 4 98 38 CASC17
SE_02_058600382 chr17:71179976-71210209 Sample_02_0586 Chordal patient-derived chordoma MGH_4 382 7 893 0 10 184 70 CASC17
SE_02_111300565 chr17:71180159-71193200 Sample_02_1113 Bone U2OS 565 3 414 0 4 124 38 CASC17
SE_02_111500898 chr17:71180328-71190784 Sample_02_1115 Liver HepG2 898 2 332 0 2 86 38 CASC17
SE_02_044600590 chr17:71225388-71343901 Sample_02_0446 Bone osteosarcoma tumor P2 590 51 3633 0 26 382 0 CASC17
SE_02_060200501 chr17:71393043-71441625 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 501 15 1462 5 2 266 0 CASC17
SE_02_154800215 chr17:71399107-71456512 Sample_02_1548 Gastrointestinal Stromal GIST-226 215 24 1687 7 2 287 0 CASC17
SE_02_125400733 chr17:71400974-71459641 Sample_02_1254 Bladder Bladder tumor Basal1 733 18 1734 7 2 298 0 CASC17,LINC01152
SE_02_102500478 chr17:71401010-71441613 Sample_02_1025 Esophagus KYSE150 478 14 1222 4 2 229 0 CASC17,LINC01152
SE_02_065200599 chr17:71401193-71441800 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 599 16 1224 4 2 229 0 CASC17,LINC01152
SE_02_135800053 chr17:71401366-71459881 Sample_02_1358 Other IC8-deltaEGF-L1596H_GSI_2h 53 21 1721 7 2 298 0 CASC17
SE_02_135700033 chr17:71401460-71458473 Sample_02_1357 Other IC8-deltaEGF-L1596H_GSI_0h 33 26 1672 6 2 292 0 CASC17
SE_02_135900053 chr17:71401541-71460509 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 53 34 1736 7 2 298 0 CASC17
SE_02_113200591 chr17:71401612-71441454 Sample_02_1132 Pancreas KLM1 wt 591 20 1200 4 2 223 0 CASC17,LINC01152
SE_02_061900388 chr17:71401646-71463226 Sample_02_0619 Head and Neck HPV+ HNSCC_SCC-047 388 17 1818 7 2 332 0 CASC17
SE_02_123000441 chr17:71401682-71425472 Sample_02_1230 Lung PC9 441 9 735 3 1 84 0 CASC17,SOX9-AS1
SE_02_123300172 chr17:71401695-71425687 Sample_02_1233 Lung PC9_miR-4497 mimic 172 11 740 3 1 85 0 CASC17
SE_02_103700634 chr17:71401719-71441909 Sample_02_1037 Pharynx FaDu Control 634 16 1213 4 2 229 0 CASC17,LINC01152
SE_02_123100133 chr17:71402081-71425416 Sample_02_1231 Lung PC9_siMED13L-1 133 11 724 3 1 84 0 CASC17,SOX9-AS1
SE_02_053000936 chr17:71402139-71439788 Sample_02_0530 Mammary gland MCF10A 936 13 1149 4 1 179 0 CASC17
SE_02_112100081 chr17:71402144-71464199 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 81 24 1837 7 2 333 0 CASC17
SE_02_123200136 chr17:71402204-71425665 Sample_02_1232 Lung PC9_siMED13L-2 136 11 728 3 1 85 0 CASC17
SE_02_151100323 chr17:71402207-71443930 Sample_02_1511 Lung H3122_untreated 323 11 1250 4 2 230 0 CASC17
SE_02_107300091 chr17:71402226-71441906 Sample_02_1073 Keratinocyte keratinocytes stem cell 91 8 1202 4 2 229 0 CASC17
SE_02_060300869 chr17:71402247-71441218 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 869 16 1182 4 2 214 0 CASC17
SE_02_071700325 chr17:71402247-71442097 Sample_02_0717 Pancreas HPAFII_GFP_DOX 325 18 1203 4 2 229 0 CASC17
SE_02_085900361 chr17:71402259-71441903 Sample_02_0859 Prostate PC3 361 6 1198 4 2 229 0 CASC17
SE_02_064700461 chr17:71402262-71441868 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 461 13 1197 4 2 229 0 CASC17,LINC01152
SE_02_070800075 chr17:71402283-71468792 Sample_02_0708 Pancreas hF3 organoid 75 28 1973 7 4 366 0 CASC17,LINC01152
SE_02_077000998 chr17:71402287-71441895 Sample_02_0770 Ovary OVCA429_shLuc 998 22 1197 4 2 228 0 CASC17
SE_02_094600223 chr17:71402287-71441996 Sample_02_0946 Tongue HN12 223 12 1199 4 2 228 0 CASC17
SE_02_048000971 chr17:71402289-71441085 Sample_02_0480 Gingival epithelial HGEP 971 14 1175 4 2 213 0 CASC17
SE_02_066100875 chr17:71402295-71439669 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 875 14 1141 4 1 176 0 CASC17
SE_02_151500484 chr17:71402295-71442195 Sample_02_1515 Non-transformed mammary epithelial IMEC WT 484 14 1201 4 2 228 0 CASC17
SE_02_064800434 chr17:71402301-71441878 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 434 19 1196 4 2 228 0 CASC17,LINC01152
SE_02_072100212 chr17:71402318-71442015 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 212 17 1198 4 2 228 0 CASC17
SE_02_064502130 chr17:71402341-71441714 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 2130 11 1189 4 2 228 0 CASC17,LINC01152
SE_02_064900657 chr17:71402394-71440917 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 657 13 1169 3 2 213 0 CASC17,LINC01152
SE_02_113100397 chr17:71402516-71441222 Sample_02_1131 Pancreas T3M4 wt 397 19 1171 2 2 213 0 CASC17
SE_02_132000920 chr17:71402607-71441967 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 920 13 1191 2 2 228 0 CASC17,SOX9-AS1
SE_02_135300394 chr17:71402692-71441970 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 394 11 1188 2 2 228 0 CASC17
SE_02_112000084 chr17:71402794-71440581 Sample_02_1120 Neonatal foreskin keratinocytes_CTR 84 21 1146 2 2 199 0 CASC17
SE_02_135100210 chr17:71402926-71441792 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 210 7 1175 2 2 222 0 CASC17,LINC01152
SE_02_044801131 chr17:71402994-71441855 Sample_02_0448 Bone MNNG 1131 14 1177 2 2 222 0 CASC17,LINC01152
SE_02_048100336 chr17:71403286-71442818 Sample_02_0481 Mammary gland MDA-MB231 336 16 1187 1 2 221 0 CASC17
SE_02_139800282 chr17:71403562-71442375 Sample_02_1398 Bone U2OS_siNC 282 14 1169 1 2 220 0 CASC17
SE_02_111500207 chr17:71404731-71441907 Sample_02_1115 Liver HepG2 207 8 1126 1 2 220 0 CASC17
SE_02_139900198 chr17:71404954-71442436 Sample_02_1399 Bone U2OS_siMLL3.1 198 13 1131 1 2 221 0 CASC17
SE_02_111300275 chr17:71405599-71441616 Sample_02_1113 Bone U2OS 275 8 1085 1 2 218 0 CASC17
SE_02_059000318 chr17:71408505-71442035 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 318 15 991 1 2 205 0 CASC17
SE_02_094100275 chr17:71408845-71441882 Sample_02_0941 Brain T98G 275 10 980 1 2 204 0 CASC17,LINC01152
SE_02_113600184 chr17:71409073-71441952 Sample_02_1136 Bone U2OS-anaphase/telophase 184 7 973 1 2 204 0 CASC17
SE_02_127100635 chr17:71409195-71441884 Sample_02_1271 Leiomyosarcoma SK-LMS-1_WT 635 7 963 1 2 204 0 CASC17
SE_02_126300781 chr17:71409210-71458639 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 781 9 1428 3 2 272 0 CASC17
SE_02_057200304 chr17:71410364-71442009 Sample_02_0572 Brain LN229_1_mM_glucose 304 13 943 1 2 174 0 CASC17
SE_02_099100640 chr17:71410936-71443021 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 640 8 939 1 2 170 0 CASC17,SOX9-AS1
SE_02_099200417 chr17:71410977-71442313 Sample_02_0992 Mammary gland MDA-MB-231_Par 417 9 926 1 2 169 0 CASC17,LOC102723517
SE_02_084600573 chr17:71411743-71442265 Sample_02_0846 Mammary gland MDA-MB-231_untreat 573 10 889 1 2 169 0 CASC17
SE_02_153400277 chr17:71411955-71441961 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 277 7 879 1 2 169 0 CASC17
SE_02_150600377 chr17:71411989-71453875 Sample_02_1506 Brain SHEP with tetracycline inducible MYC_DOX_6HR 377 10 1200 3 2 216 0 CASC17
SE_02_071600561 chr17:71411997-71441222 Sample_02_0716 Pancreas SUIT2_GFP 561 8 855 1 2 154 0 CASC17
SE_02_071900900 chr17:71412090-71442000 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 900 12 874 1 2 169 0 CASC17
SE_02_127500614 chr17:71412140-71441830 Sample_02_1275 Prostate PC3_Vorinostat 614 15 869 1 2 169 0 CASC17,LOC102723505
SE_02_126801012 chr17:71413969-71441593 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 1012 6 800 1 2 169 0 CASC17,LINC01152
SE_02_068700897 chr17:71423224-71471856 Sample_02_0687 Lung NCI-H146_no infection 897 12 1397 4 4 321 0 CASC17,LOC102723505
SE_02_129200612 chr17:71448449-71466183 Sample_02_1292 Lung JHU-LX110-SCLC PDX 612 7 522 2 1 72 0 CASC17,LOC102723505
SE_02_064801375 chr17:71455516-71473701 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1375 10 527 1 2 108 0 CASC17,LINC01152
SE_02_065201377 chr17:71516506-71549721 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1377 13 958 0 2 113 0 CASC17,LINC01152
Genomic distribution of SEs associated with CASC17
Genome Browser

The strength of the tissue affected by the gene

Expression of CASC17

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)