SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000236824
Gene: BCYRN1 Gene type: scRNA
Strand: + External links:
Genomic region: chr2:47335315-47335514 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_152700047 chr2:47191444-47337486 Sample_02_1527 Embryo naive embryonic stem cell 47 43 4835 154 12 191 621 BCYRN1,LOC101927043,CALM2,MIR559,EPCAM,C2ORF61
SE_02_104603221 chr2:47239446-47274878 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3221 9 1303 42 10 56 0 LOC101927043,BCYRN1,CALM2
SE_02_101300521 chr2:47256522-47283897 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 521 9 920 36 0 43 0 LOC101927043,BCYRN1
SE_02_120400152 chr2:47263159-47323888 Sample_02_1204 Brain NB2 152 19 1946 78 1 82 333 LOC101927043,BCYRN1,EPCAM
SE_02_121300171 chr2:47263291-47324005 Sample_02_1213 Brain GBM31 171 20 1944 75 1 82 333 LOC101927043,BCYRN1,EPCAM
SE_02_117300325 chr2:47263622-47333277 Sample_02_1173 Brain GBM01 325 21 2243 84 1 82 333 LOC101927043,MIR559,EPCAM,BCYRN1
SE_02_120500333 chr2:47263804-47323962 Sample_02_1205 Brain NB3 333 16 1915 75 1 82 333 LOC101927043,BCYRN1,EPCAM
SE_02_100100098 chr2:47264117-47274862 Sample_02_1001 Brain Lateral temporal lobe_17T_Young 98 3 359 12 0 33 0 LOC101927043,BCYRN1
SE_02_139900505 chr2:47267544-47292462 Sample_02_1399 Bone U2OS_siMLL3.1 505 10 755 16 1 19 0 LOC101927043,BCYRN1
SE_02_100400214 chr2:47267565-47274980 Sample_02_1004 Brain Lateral temporal lobe_10T_Old 214 2 225 6 0 15 0 LOC101927043,BCYRN1
SE_02_046500683 chr2:47268927-47323729 Sample_02_0465 Adipose subcutaneous adipocytes 683 23 1731 67 1 56 333 LOC101927043,BCYRN1,EPCAM
SE_02_047400722 chr2:47268977-47310570 Sample_02_0474 Fibroblast umbilical cord Fibroblast 722 14 1312 54 1 36 245 LOC101927043,BCYRN1
SE_02_135501019 chr2:47269227-47304725 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 1019 7 1123 47 1 30 0 LOC101927043,BCYRN1
SE_02_135600320 chr2:47269247-47310932 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 320 9 1322 54 1 36 309 LOC101927043,BCYRN1
SE_04_000600467 chr2:47287261-47313835 Sample_04_0006 Lung A549 GFP control 467 9 857 42 0 28 333 LOC101927043,BCYRN1
SE_04_000900456 chr2:47287798-47323950 Sample_04_0009 Lung A549 456 9 1163 53 0 39 333 LOC101927043,BCYRN1,EPCAM
SE_02_118700757 chr2:47294075-47321112 Sample_02_1187 Brain GBM16 757 11 865 47 0 34 333 LOC101927043,BCYRN1,EPCAM
SE_02_149400561 chr2:47294221-47311418 Sample_02_1494 Other monocyte-derived dendritic cells_0h 561 10 560 36 0 19 333 LOC101927043,BCYRN1,MSH2
SE_02_141700141 chr2:47294477-47312041 Sample_02_1417 Brain SF7761 141 3 575 35 0 20 333 LOC101927043,BCYRN1
SE_02_118000265 chr2:47294820-47321890 Sample_02_1180 Brain GBM09 265 12 853 45 0 35 333 LOC101927043,BCYRN1,EPCAM
SE_02_117401157 chr2:47294852-47319770 Sample_02_1174 Brain GBM02 1157 11 787 44 0 29 333 LOC101927043,BCYRN1,EPCAM
SE_02_141000840 chr2:47295063-47323675 Sample_02_1410 Brain GSC6 840 9 898 45 0 38 333 LOC101927043,BCYRN1,EPCAM
SE_02_051600666 chr2:47295070-47356002 Sample_02_0516 Esophagus KYSE70 666 8 2010 94 0 56 398 BCYRN1,LOC101927043,MIR559,MSH2,EPCAM
SE_02_050500666 chr2:47295070-47356004 Sample_02_0505 Esophagus KYSE70_1 666 9 2010 94 0 56 398 BCYRN1,LOC101927043,MIR559,MSH2,EPCAM
SE_02_119200548 chr2:47295357-47323672 Sample_02_1192 Brain GBM26 548 14 885 44 0 38 333 LOC101927043,BCYRN1,EPCAM
SE_02_101700867 chr2:47295578-47357626 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 867 8 2049 98 0 56 398 BCYRN1,LOC101927043,MIR559,MSH2,EPCAM
SE_02_119400609 chr2:47295796-47323881 Sample_02_1194 Brain GBM28 609 15 876 44 0 39 333 LOC101927043,BCYRN1,EPCAM
SE_02_119600676 chr2:47296032-47324006 Sample_02_1196 Brain GBM32 676 18 875 42 0 39 333 LOC101927043,BCYRN1,EPCAM
SE_02_119800495 chr2:47296044-47323398 Sample_02_1198 Brain GBM34 495 18 850 42 0 37 333 LOC101927043,BCYRN1,EPCAM
SE_02_122100194 chr2:47299726-47323219 Sample_02_1221 Bone marrow KMS11 194 7 717 28 0 37 333 LOC101927043,BCYRN1,EPCAM
SE_02_120300285 chr2:47300157-47324328 Sample_02_1203 Brain NB1 285 6 739 28 0 38 333 LOC101927043,BCYRN1,EPCAM
SE_02_047600881 chr2:47300452-47322434 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 881 13 668 27 0 33 333 LOC101927043,BCYRN1,EPCAM
SE_02_121800761 chr2:47300458-47337728 Sample_02_1218 Bone marrow Daudi 761 12 1189 40 0 36 333 BCYRN1,LOC101927043,MIR559,EPCAM
SE_02_121100255 chr2:47300629-47323900 Sample_02_1211 Brain GBM21 255 15 716 27 0 36 333 LOC101927043,BCYRN1,EPCAM
SE_02_140200151 chr2:47300788-47321338 Sample_02_1402 Blood MM.1S_GNE-781 151 5 627 26 0 31 333 LOC101927043,BCYRN1,EPCAM
SE_02_075700504 chr2:47300999-47347189 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 504 9 1528 57 0 48 398 BCYRN1,LOC101927043,MIR559,EPCAM
SE_02_101300338 chr2:47301167-47324191 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 338 19 710 26 0 36 333 LOC101927043,BCYRN1,EPCAM
SE_02_100400063 chr2:47303681-47319216 Sample_02_1004 Brain Lateral temporal lobe_10T_Old 63 5 484 18 0 18 333 LOC101927043,BCYRN1,EPCAM
SE_01_010101518 chr2:47304995-47347246 Sample_01_0101 Pancreas pancreas_54y 1518 6 1424 49 0 39 398 BCYRN1,LOC101927043,MIR559,EPCAM
SE_02_100900237 chr2:47306143-47324060 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 237 15 554 16 0 27 333 LOC101927043,BCYRN1,EPCAM
SE_02_100000218 chr2:47306496-47321949 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 218 10 477 15 0 23 333 LOC101927043,BCYRN1,EPCAM
SE_02_100800198 chr2:47306497-47322642 Sample_02_1008 Brain Lateral temporal lobe_1T_AD 198 14 494 16 0 25 333 LOC101927043,BCYRN1,EPCAM
SE_02_121900342 chr2:47307101-47323248 Sample_02_1219 Bone marrow H929 342 5 489 14 0 25 333 LOC101927043,BCYRN1,EPCAM
SE_02_122300673 chr2:47307264-47323533 Sample_02_1223 Bone marrow KMS28BM 673 5 496 14 0 24 333 LOC101927043,BCYRN1,EPCAM
SE_02_070300597 chr2:47307934-47314314 Sample_02_0703 Pancreas PATU8988S WT 597 1 184 5 0 13 333 LOC101927043,BCYRN1
SE_02_071800341 chr2:47307934-47323974 Sample_02_0718 Pancreas PATU8988S_GFP_DOX 341 4 496 14 0 24 333 LOC101927043,BCYRN1,EPCAM
SE_02_122700902 chr2:47308382-47323626 Sample_02_1227 Bone marrow U266 902 4 468 14 0 23 333 LOC101927043,BCYRN1,EPCAM
SE_02_137100670 chr2:47308841-47324073 Sample_02_1371 Pancreas Patu899S-untreated 670 2 470 14 0 24 332 LOC101927043,BCYRN1,EPCAM
SE_02_100600191 chr2:47309046-47323544 Sample_02_1006 Brain Lateral temporal lobe_13T_Old 191 9 446 14 0 23 306 LOC101927043,BCYRN1,EPCAM
SE_02_101100186 chr2:47309086-47322265 Sample_02_1011 Brain Lateral temporal lobe_5T_AD 186 5 403 14 0 21 304 LOC101927043,BCYRN1,EPCAM
SE_02_100500267 chr2:47309680-47322382 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 267 7 394 13 0 21 213 LOC101927043,BCYRN1,EPCAM
SE_02_101500559 chr2:47309937-47347790 Sample_02_1015 Embryo H9_ Undifferentiated 559 5 1279 44 0 37 251 BCYRN1,LOC101927043,MIR559,EPCAM,MSH2
SE_02_104602997 chr2:47310267-47342538 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2997 12 1073 34 0 24 138 BCYRN1,LOC101927043,MIR559,EPCAM
SE_02_101400221 chr2:47310442-47321731 Sample_02_1014 Brain Lateral temporal lobe_7T_AD 221 3 355 12 0 17 99 LOC101927043,BCYRN1,EPCAM
SE_02_157000507 chr2:47319942-47347160 Sample_02_1570 iPSCs EiPSC 507 4 946 33 0 19 65 BCYRN1,LOC101927043,MIR559,EPCAM
SE_02_068800216 chr2:47327775-47347405 Sample_02_0688 Lung NCI-H211_no infection 216 3 680 26 0 12 65 BCYRN1,LOC101927043,MIR559,EPCAM
Genomic distribution of SEs associated with BCYRN1
Genome Browser

The strength of the tissue affected by the gene

Expression of BCYRN1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)