SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000072182
Gene: ASIC4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr2:219514170-219538772 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_110600038 chr2:219495012-219524519 Sample_02_1106 Brain NGP 38 1 796 42 0 472 1642 LOC100996693,GMPPA,ASIC4,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_110700102 chr2:219495720-219528244 Sample_02_1107 Brain SK-N-AS 102 1 882 48 0 493 1642 LOC100996693,GMPPA,ASIC4,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_106800073 chr2:219496652-219526469 Sample_02_1068 Brain NGP_ctrl 73 9 815 45 0 482 1642 LOC100996693,GMPPA,ASIC4,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_113000076 chr2:219497074-219531015 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 76 8 934 49 0 498 1642 LOC100996693,GMPPA,ASIC4,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_106100332 chr2:219497637-219521866 Sample_02_1061 Bone TC71_WT 332 6 663 33 0 431 1642 LOC100996693,GMPPA,ASIC4,SPEG,TMEM198,CHPF,OBSL1,MIR3132
SE_02_148800333 chr2:219497637-219521866 Sample_02_1488 Bone TC-71 333 6 663 33 0 431 1642 LOC100996693,GMPPA,ASIC4,SPEG,TMEM198,CHPF,OBSL1,MIR3132
SE_02_146700272 chr2:219500236-219538560 Sample_02_1467 Blood HUDEP-2_LRFKO 272 4 1092 60 0 542 2447 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_109900062 chr2:219500460-219530274 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 62 8 810 42 0 473 1375 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_110300115 chr2:219500627-219517902 Sample_02_1103 Brain NB-1643 115 1 472 15 0 363 1375 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_111600196 chr2:219500628-219530298 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 196 9 808 42 0 473 1375 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_054500435 chr2:219500828-219530323 Sample_02_0545 Bone marrow K562 WT 435 13 805 42 0 473 1375 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_110500066 chr2:219500844-219530248 Sample_02_1105 Brain NBL-S 66 1 802 42 0 473 1375 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_098800129 chr2:219500864-219530199 Sample_02_0988 Blood K562_EPZ 129 12 801 42 0 472 1375 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_110400036 chr2:219500958-219528224 Sample_02_1104 Brain NB-69 36 1 745 39 0 471 1375 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_110800036 chr2:219501048-219528984 Sample_02_1108 Brain SK-N-BE_2_-C 36 1 758 40 0 471 1375 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_098700216 chr2:219501069-219530259 Sample_02_0987 Blood K562_Control_1 216 12 795 42 0 473 1375 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_147600693 chr2:219501206-219522257 Sample_02_1476 Bone EW-1 693 5 577 31 0 419 1375 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_149900068 chr2:219501411-219538411 Sample_02_1499 Brain BE_2_-C 68 16 1063 60 0 540 2356 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_123700020 chr2:219501479-219519265 Sample_02_1237 Skin MKL2_virus_positive 20 3 500 19 0 388 1332 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_01_011100578 chr2:219501646-219527920 Sample_01_0111 Brain SK-N-SH 578 5 723 39 0 467 1299 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_054700154 chr2:219501686-219527552 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 154 8 716 39 0 466 1295 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_123500184 chr2:219501687-219527566 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 184 9 716 39 0 466 1295 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_148500513 chr2:219501725-219522550 Sample_02_1485 Bone SK-ES-1 513 7 575 31 0 424 1293 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_123800082 chr2:219501782-219530191 Sample_02_1238 Skin MS1_virus_positive 82 12 778 42 0 469 1280 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_123600292 chr2:219501824-219512492 Sample_02_1236 Skin MKL1_virus_positive 292 3 275 12 0 245 779 GMPPA,LOC100996693,SPEG,TMEM198,ASIC4,CHPF,MIR3132
SE_02_062800118 chr2:219501962-219523104 Sample_02_0628 Brain CHP-134 118 8 583 33 0 424 1244 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_057600352 chr2:219502332-219531472 Sample_02_0576 Blood HEL_sgLKB1e2 352 10 806 44 0 457 1158 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_150000381 chr2:219502418-219530209 Sample_02_1500 Brain KELLY_untreat 381 12 763 42 0 449 1149 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_058000396 chr2:219502449-219531065 Sample_02_0580 Blood HEL_sgSIK3e4 396 12 792 44 0 455 1139 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_057900352 chr2:219502679-219530217 Sample_02_0579 Blood HEL_sgNeg2 352 9 757 42 0 449 1105 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_085400331 chr2:219503418-219512412 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 331 1 234 10 0 225 614 GMPPA,LOC100996693,SPEG,TMEM198,ASIC4,CHPF,MIR3132
SE_02_118300029 chr2:219503566-219523629 Sample_02_1183 Brain GBM12 29 1 556 31 0 418 1105 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_118400057 chr2:219503574-219518957 Sample_02_1184 Brain GBM13 57 1 436 15 0 364 1105 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_095500014 chr2:219503754-219541100 Sample_02_0955 Brain IDH1_2469 14 10 1109 61 0 583 2704 GMPPA,CHPF,ASIC4,LOC100996693,SPEG,TMEM198,INHA,OBSL1,MIR3132
SE_02_085700255 chr2:219503795-219519030 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 255 1 435 16 0 362 1105 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_096300376 chr2:219503844-219518965 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 376 1 430 15 0 362 1105 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_096800155 chr2:219504166-219518341 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 155 1 407 15 0 361 1061 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_119300115 chr2:219504273-219518976 Sample_02_1193 Brain GBM27 115 1 428 15 0 357 1037 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_121200012 chr2:219504317-219523561 Sample_02_1212 Brain GBM30 12 1 543 31 0 410 1032 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_117900016 chr2:219504338-219523284 Sample_02_1179 Brain GBM08 16 1 534 31 0 405 1026 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_118100069 chr2:219504404-219523561 Sample_02_1181 Brain GBM10 69 1 540 31 0 410 1014 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_117700054 chr2:219504414-219523644 Sample_02_1177 Brain GBM05 54 1 542 31 0 410 1014 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_085500160 chr2:219504498-219522817 Sample_02_0855 Glioblastoma Glioblastoma neurosphere cell_HF-2927 160 3 518 30 0 393 1014 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_097100178 chr2:219504542-219518993 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 178 1 416 14 0 350 1014 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_147400335 chr2:219504670-219522851 Sample_02_1474 Bone CHLA-10 335 5 509 30 0 393 1014 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_118700405 chr2:219504670-219538967 Sample_02_1187 Brain GBM16 405 9 994 57 0 506 2161 GMPPA,CHPF,ASIC4,LOC100996693,SPEG,TMEM198,INHA,OBSL1,MIR3132
SE_02_121000086 chr2:219504678-219539519 Sample_02_1210 Brain GBM17 86 18 1015 57 0 510 2304 GMPPA,CHPF,ASIC4,LOC100996693,SPEG,TMEM198,INHA,OBSL1,MIR3132
SE_02_118800376 chr2:219504692-219518899 Sample_02_1188 Brain GBM18 376 1 407 14 0 350 1014 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_095700096 chr2:219504703-219518118 Sample_02_0957 Brain 429_Tumor_H3.3K27WT 96 1 379 14 0 344 1014 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_110900499 chr2:219504714-219517365 Sample_02_1109 Brain SK-N-FI 499 1 365 12 0 323 989 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_120000560 chr2:219504789-219518917 Sample_02_1200 Brain GBM36 560 1 404 14 0 349 1014 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_118600638 chr2:219504816-219518198 Sample_02_1186 Brain GBM15 638 1 376 14 0 344 1014 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_079800315 chr2:219504864-219522773 Sample_02_0798 Brain 1919 315 6 503 30 0 386 1014 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_119600142 chr2:219504866-219523482 Sample_02_1196 Brain GBM32 142 1 518 30 0 399 1014 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_117800057 chr2:219504893-219539829 Sample_02_1178 Brain GBM07 57 4 1028 58 0 508 2367 GMPPA,CHPF,ASIC4,LOC100996693,SPEG,TMEM198,INHA,OBSL1,MIR3132
SE_02_085600480 chr2:219504946-219521385 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 480 3 472 25 0 369 1014 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_097000070 chr2:219505051-219524159 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 70 1 533 29 0 399 1004 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_148000735 chr2:219505106-219523346 Sample_02_1480 Bone MHH-ES-1 735 4 506 29 0 398 990 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_121100087 chr2:219505154-219539419 Sample_02_1211 Brain GBM21 87 6 1000 56 0 502 2249 GMPPA,CHPF,ASIC4,LOC100996693,SPEG,TMEM198,INHA,OBSL1,MIR3132
SE_02_118000118 chr2:219505370-219539271 Sample_02_1180 Brain GBM09 118 9 986 56 0 498 2158 GMPPA,CHPF,ASIC4,LOC100996693,SPEG,TMEM198,INHA,OBSL1,MIR3132
SE_02_118200074 chr2:219505438-219518943 Sample_02_1182 Brain GBM11 74 1 387 13 0 341 914 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_079400066 chr2:219505468-219518603 Sample_02_0794 Brain 1552 66 1 374 13 0 341 905 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_117500552 chr2:219505503-219523317 Sample_02_1175 Brain GBM03 552 9 495 29 0 395 895 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_096900576 chr2:219505646-219515207 Sample_02_0969 Brain H3.3K27M_PL637 576 1 264 10 0 284 667 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_095600303 chr2:219505750-219518488 Sample_02_0956 Brain IDH1_2658 303 1 362 13 0 337 829 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_118900165 chr2:219505850-219517930 Sample_02_1189 Brain GBM22 165 1 341 11 0 315 803 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_095800203 chr2:219505930-219519319 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 203 1 386 14 0 337 791 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_097900626 chr2:219505982-219523471 Sample_02_0979 Brain JN14-BS1_H3.3K27M 626 9 486 28 0 390 779 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_120200579 chr2:219506096-219519135 Sample_02_1202 Brain GBM38 579 1 373 14 0 330 754 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_119000361 chr2:219506135-219523224 Sample_02_1190 Brain GBM24 361 3 470 28 0 379 741 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_04_000100139 chr2:219506217-219530979 Sample_04_0001 Blood heat shocked K562 139 1 688 39 0 421 723 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_067700423 chr2:219506228-219522150 Sample_02_0677 Embryo H1 hESC-derived neural progenitor cells_Smad_6hr 423 5 445 26 0 355 718 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,OBSL1,MIR3132
SE_02_055800274 chr2:219506295-219538613 Sample_02_0558 iPSCs FX52 iPSCs mock 274 7 936 55 0 480 1768 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_077501011 chr2:219506359-219515011 Sample_02_0775 Pancreas EndoC-BH1_SE 1011 1 234 7 0 251 442 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_04_000200227 chr2:219506394-219531031 Sample_04_0002 Blood cold shocked K562 227 1 686 38 0 414 680 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_055900689 chr2:219506658-219524060 Sample_02_0559 iPSCs FX52 iPSCs dC-T 689 5 478 27 0 374 608 GMPPA,ASIC4,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_074300378 chr2:219506746-219539309 Sample_02_0743 Embryo ES derived mesoderm_day2 378 12 942 54 0 476 1824 GMPPA,CHPF,ASIC4,LOC100996693,SPEG,TMEM198,INHA,OBSL1,MIR3132
SE_02_096100146 chr2:219508767-219538690 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 146 8 874 51 0 404 1584 ASIC4,GMPPA,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_106200033 chr2:219509036-219520416 Sample_02_1062 Glioma TS543 glioma cells 33 5 335 16 0 246 491 ASIC4,GMPPA,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_119800344 chr2:219509108-219519235 Sample_02_1198 Brain GBM34 344 1 302 10 0 235 491 ASIC4,GMPPA,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_054600399 chr2:219509161-219527320 Sample_02_0546 Bone marrow K562_MYO1D Non-hub KO 399 7 519 30 0 316 491 ASIC4,GMPPA,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_074400383 chr2:219509381-219527489 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 383 10 521 30 0 302 491 ASIC4,GMPPA,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_087400385 chr2:219510299-219523409 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 385 8 368 23 0 251 491 ASIC4,GMPPA,LOC100996693,SPEG,TMEM198,INHA,CHPF,OBSL1,MIR3132
SE_02_096201035 chr2:219510631-219518926 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 1035 1 251 7 0 195 491 ASIC4,GMPPA,LOC100996693,SPEG,TMEM198,CHPF,MIR3132
SE_02_087200319 chr2:219516025-219539647 Sample_02_0872 Colon HCT116_siCtrl-5FU 319 8 699 45 0 204 1433 CHPF,ASIC4,GMPPA,LOC100996693,TMEM198,INHA,OBSL1,MIR3132
SE_02_114200384 chr2:219516730-219537621 Sample_02_1142 Peripheral nerve MPNST642_PRC2 mutant 384 5 608 42 0 175 912 ASIC4,GMPPA,LOC100996693,TMEM198,INHA,CHPF,OBSL1,MIR3132
Genomic distribution of SEs associated with ASIC4
Genome Browser

The strength of the tissue affected by the gene

Expression of ASIC4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)