SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000089820
Gene: ARHGAP4 Gene type: protein_coding
Strand: - External links:
Genomic region: chrX:153907367-153934999 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_110800218 chrX:153900521-153931573 Sample_02_1108 Brain SK-N-BE_2_-C 218 6 732 48 2 145 3216 AVPR2,ARHGAP4,NAA10,MIR3202-1,HCFC1,L1CAM,HCFC1-AS1,MIR3202-2,TMEM187,RENBP,LCA10
SE_02_110500463 chrX:153900804-153932949 Sample_02_1105 Brain NBL-S 463 13 751 49 2 152 3488 AVPR2,ARHGAP4,NAA10,MIR3202-1,HCFC1,L1CAM,HCFC1-AS1,MIR3202-2,TMEM187,RENBP,LCA10
SE_02_103602629 chrX:153910484-153933086 Sample_02_1036 Mammary gland HCC70_XY018 2629 5 487 32 1 88 2054 ARHGAP4,NAA10,MIR3202-1,AVPR2,HCFC1,L1CAM,HCFC1-AS1,MIR3202-2,TMEM187,RENBP,LCA10
SE_02_111201037 chrX:153911900-153930553 Sample_02_1112 T lymphocyte THP-6 T-ALL 1037 2 400 22 1 61 1399 ARHGAP4,NAA10,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,LCA10
SE_02_154100551 chrX:153916299-153931348 Sample_02_1541 Nasopharyngeal HNE1 551 6 330 20 1 63 1161 ARHGAP4,NAA10,MIR3202-1,AVPR2,HCFC1,L1CAM,HCFC1-AS1,MIR3202-2,TMEM187,RENBP,LCA10
SE_02_036900350 chrX:153920466-153929940 Sample_02_0369 Skeletal muscle RD 350 2 198 9 1 36 674 NAA10,ARHGAP4,AVPR2,HCFC1,TMEM187,L1CAM,RENBP
SE_02_037900350 chrX:153920466-153929940 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 350 2 198 9 1 36 674 NAA10,ARHGAP4,AVPR2,HCFC1,TMEM187,L1CAM,RENBP
SE_02_124400179 chrX:153920608-153928372 Sample_02_1244 Brain KCNR_ATRA 179 3 177 8 1 36 579 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_083301010 chrX:153920763-153929558 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 1010 1 189 9 1 36 533 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_033100132 chrX:153920913-153932413 Sample_02_0331 Haematopoietic and lymphoid tissue MOLM14_untreated 132 3 246 18 1 66 1020 NAA10,ARHGAP4,AVPR2,HCFC1,MIR3202-1,TMEM187,L1CAM,RENBP,MIR3202-2
SE_02_108000683 chrX:153920973-153929059 Sample_02_1080 Muscle JR1 shCtrl 683 2 182 9 1 36 484 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_01_008400737 chrX:153921053-153930799 Sample_01_0084 Spleen spleen 737 1 210 15 1 50 668 NAA10,ARHGAP4,AVPR2,HCFC1,TMEM187,L1CAM,RENBP
SE_02_011400297 chrX:153921174-153931788 Sample_02_0114 Mammary gland CAL51 297 1 231 18 1 61 819 NAA10,ARHGAP4,AVPR2,HCFC1,MIR3202-1,TMEM187,L1CAM,RENBP,MIR3202-2
SE_02_022300241 chrX:153921253-153932889 Sample_02_0223 Haematopoietic and lymphoid tissue MOLT4_1 241 1 249 19 1 68 1032 NAA10,ARHGAP4,AVPR2,HCFC1,MIR3202-1,TMEM187,L1CAM,RENBP,MIR3202-2
SE_02_111900366 chrX:153921313-153928313 Sample_02_1119 Blood KBM7 366 1 164 8 1 36 402 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_033200266 chrX:153921447-153931686 Sample_02_0332 Haematopoietic and lymphoid tissue MOLM14_DMSO_9 266 1 222 18 1 58 738 NAA10,ARHGAP4,AVPR2,HCFC1,MIR3202-1,TMEM187,L1CAM,RENBP,MIR3202-2
SE_02_083501113 chrX:153921500-153929173 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 1113 1 172 8 1 33 356 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_083100807 chrX:153921551-153930536 Sample_02_0831 Umblical vein HUVECs_TNF0min 807 8 188 11 1 47 502 ARHGAP4,NAA10,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,LCA10
SE_02_033400370 chrX:153921590-153930592 Sample_02_0334 Haematopoietic and lymphoid tissue MOLM14_CA25_11 370 1 188 11 1 47 494 NAA10,ARHGAP4,AVPR2,HCFC1,TMEM187,L1CAM,RENBP
SE_01_005200566 chrX:153921604-153929906 Sample_01_0052 Blood neutrophil 566 1 173 8 1 31 380 ARHGAP4,AVPR2,HCFC1,NAA10,TMEM187,L1CAM,RENBP
SE_02_146900823 chrX:153921642-153931287 Sample_02_1469 Umbilical Vein HUVEC 823 4 209 16 1 51 604 ARHGAP4,NAA10,MIR3202-1,AVPR2,HCFC1,L1CAM,HCFC1-AS1,MIR3202-2,TMEM187,RENBP,LCA10
SE_02_033300214 chrX:153921672-153930121 Sample_02_0333 Haematopoietic and lymphoid tissue MOLM14_DMSO_10 214 2 176 9 1 40 402 NAA10,ARHGAP4,AVPR2,HCFC1,TMEM187,L1CAM,RENBP
SE_00_005601065 chrX:153921773-153930455 Sample_00_0056 Sigmoid colon sigmoid colon 3y 1065 9 180 10 1 43 453 ARHGAP4,NAA10,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,LCA10
SE_02_148500770 chrX:153921780-153930757 Sample_02_1485 Bone SK-ES-1 770 4 191 14 1 43 491 ARHGAP4,NAA10,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,LCA10
SE_02_129200600 chrX:153921847-153929077 Sample_02_1292 Lung JHU-LX110-SCLC PDX 600 2 164 8 1 28 277 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_046300616 chrX:153922018-153929092 Sample_02_0463 Blood OCI-AML3 cells 616 4 157 8 1 28 237 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_076100373 chrX:153922650-153930870 Sample_02_0761 Ovary BIN-67_SMARCA4.T910M 373 1 176 13 1 45 378 ARHGAP4,NAA10,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,LCA10
SE_02_033500310 chrX:153922734-153930015 Sample_02_0335 Haematopoietic and lymphoid tissue MOLM14_CA25_12 310 1 156 8 1 26 233 NAA10,ARHGAP4,AVPR2,HCFC1,TMEM187,L1CAM,RENBP
SE_02_122700477 chrX:153922861-153928283 Sample_02_1227 Bone marrow U266 477 1 131 6 1 25 157 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_121900405 chrX:153922885-153929856 Sample_02_1219 Bone marrow H929 405 2 146 7 1 26 203 ARHGAP4,NAA10,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,LCA10
SE_02_073900786 chrX:153922936-153931470 Sample_02_0739 Blood Nalm6 786 1 184 15 1 51 482 ARHGAP4,NAA10,MIR3202-1,AVPR2,HCFC1,L1CAM,HCFC1-AS1,MIR3202-2,TMEM187,RENBP,LCA10
SE_02_045900666 chrX:153923018-153928376 Sample_02_0459 Blood ME-1_DMSO_6h 666 1 128 6 1 26 157 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_057500396 chrX:153923111-153929857 Sample_02_0575 Blood MOLM13_sgLKB1e2 396 4 142 7 1 26 203 ARHGAP4,NAA10,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,LCA10
SE_02_033700571 chrX:153923119-153930356 Sample_02_0337 Haematopoietic and lymphoid tissue MV411_untreat 571 2 149 8 1 40 302 NAA10,ARHGAP4,AVPR2,HCFC1,TMEM187,L1CAM,RENBP
SE_02_122200407 chrX:153923122-153929613 Sample_02_1222 Bone marrow KMS12 407 2 140 7 1 26 157 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_075100361 chrX:153923172-153931004 Sample_02_0751 Lymphoma Rec-1_WO 361 5 169 15 1 45 402 ARHGAP4,NAA10,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,LCA10
SE_02_058200514 chrX:153923178-153930349 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 514 3 147 8 1 40 300 ARHGAP4,NAA10,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,LCA10
SE_02_057700557 chrX:153923233-153930354 Sample_02_0577 Blood MOLM13_empty 557 4 147 8 1 40 300 ARHGAP4,NAA10,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,LCA10
SE_02_058100457 chrX:153923317-153929436 Sample_02_0581 Blood MOLM13_empty_HG 457 2 133 5 1 25 157 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_099300761 chrX:153923335-153928994 Sample_02_0993 Blood MOLM-13_empty 761 3 128 4 1 25 157 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_075000361 chrX:153923348-153930730 Sample_02_0750 Lymphoma Rec-1_GSI 361 2 154 11 1 39 347 ARHGAP4,NAA10,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,LCA10
SE_02_046100424 chrX:153923355-153929190 Sample_02_0461 Blood MV-4-11-B cells 424 3 128 5 1 25 157 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_034800635 chrX:153923360-153930805 Sample_02_0348 Peripheral blood CUTLL1_wild-type 635 1 155 11 1 39 362 NAA10,ARHGAP4,AVPR2,HCFC1,TMEM187,L1CAM,RENBP
SE_02_057400504 chrX:153923436-153929797 Sample_02_0574 Blood MOLM-13_sgNeg2 504 3 131 5 1 25 189 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_012200247 chrX:153923673-153931979 Sample_02_0122 Haematopoietic and lymphoid tissue TOLEDO 247 1 177 14 1 50 572 NAA10,ARHGAP4,AVPR2,HCFC1,MIR3202-1,TMEM187,L1CAM,RENBP,MIR3202-2
SE_02_057800381 chrX:153923816-153929329 Sample_02_0578 Blood MOLM-13_sgSIK3e4 381 2 125 5 1 25 157 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_122100154 chrX:153923884-153929343 Sample_02_1221 Bone marrow KMS11 154 2 121 4 1 25 157 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_034900509 chrX:153923916-153930501 Sample_02_0349 Peripheral blood CUTLL1_dimer-mutant 509 2 137 7 1 39 318 NAA10,ARHGAP4,AVPR2,HCFC1,TMEM187,L1CAM,RENBP
SE_00_003900744 chrX:153923924-153929951 Sample_00_0039 Spleen spleen_3y 744 1 126 5 1 25 217 NAA10,ARHGAP4,AVPR2,HCFC1,TMEM187,L1CAM,RENBP
SE_02_022500407 chrX:153923947-153930572 Sample_02_0225 Haematopoietic and lymphoid tissue PF-382 407 1 138 7 1 39 318 NAA10,ARHGAP4,AVPR2,HCFC1,TMEM187,L1CAM,RENBP
SE_02_012000391 chrX:153923954-153929708 Sample_02_0120 Haematopoietic and lymphoid tissue REC-1 391 1 123 4 1 25 166 ARHGAP4,AVPR2,HCFC1,NAA10,TMEM187,L1CAM,RENBP
SE_02_122000114 chrX:153923978-153929175 Sample_02_1220 Bone marrow JJN3 114 2 118 4 1 25 157 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_099400955 chrX:153923993-153929118 Sample_02_0994 Blood MOLM13_SIK3TQ 955 2 118 4 1 25 157 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_106900482 chrX:153924002-153930795 Sample_02_1069 Bone marrow Bone marrow aspirate 482 1 145 10 1 39 360 ARHGAP4,NAA10,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,LCA10
SE_00_005500700 chrX:153924052-153928374 Sample_00_0055 Spleen spleen 34y 700 1 105 3 1 25 157 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_099500971 chrX:153924073-153928965 Sample_02_0995 Blood MOLM-13_empty vector 971 2 113 3 1 25 157 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_00_004000869 chrX:153924074-153929043 Sample_00_0040 Spleen spleen_30y 869 1 115 4 1 25 157 ARHGAP4,AVPR2,HCFC1,NAA10,TMEM187,L1CAM,RENBP
SE_02_106500341 chrX:153924142-153930341 Sample_02_1065 Lymphoma KARPAS-422_DMSO_8d 341 2 126 5 1 39 298 ARHGAP4,NAA10,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,LCA10
SE_02_122301139 chrX:153924316-153929738 Sample_02_1223 Bone marrow KMS28BM 1139 3 118 4 1 25 172 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_121600432 chrX:153924512-153929808 Sample_02_1216 Blood Jurkat ZBTB1 KO 432 2 111 4 0 24 189 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_104902027 chrX:153925524-153928758 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 2027 1 77 3 0 17 157 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_132001381 chrX:153925551-153928274 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 1381 1 72 3 0 16 157 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
SE_02_132201400 chrX:153925829-153929159 Sample_02_1322 Connective Tissue HT1080_WT 1400 2 70 3 0 17 157 ARHGAP4,L1CAM,AVPR2,HCFC1,HCFC1-AS1,TMEM187,RENBP,NAA10,LCA10
Genomic distribution of SEs associated with ARHGAP4
Genome Browser

The strength of the tissue affected by the gene

Expression of ARHGAP4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)