SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000115266
Gene: APC2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:1446302-1473244 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_120300377 chr19:1432126-1475308 Sample_02_1203 Brain NB1 377 11 1502 82 1 236 5631 APC2,RPS15,C19ORF25,DAZAP1,GAMT,ADAMTSL5,PLK5,NDUFS7,PCSK4,REEP6
SE_02_104602147 chr19:1433845-1461067 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2147 8 952 54 1 109 2547 APC2,RPS15,DAZAP1,GAMT,NDUFS7,PCSK4,REEP6,C19ORF25
SE_02_117700490 chr19:1437889-1456327 Sample_02_1177 Brain GBM05 490 4 606 31 0 66 1545 APC2,RPS15,DAZAP1,GAMT,PCSK4,REEP6,C19ORF25
SE_02_133400141 chr19:1438011-1452778 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 141 6 456 26 0 42 968 APC2,RPS15,DAZAP1,GAMT,PCSK4,REEP6,C19ORF25
SE_02_029900477 chr19:1438017-1453424 Sample_02_0299 Neuroblastoma CLB-MA 477 3 489 28 0 50 1140 RPS15,APC2,GAMT,PCSK4,REEP6,C19ORF25,DAZAP1
SE_02_121200120 chr19:1438136-1457434 Sample_02_1212 Brain GBM30 120 7 639 37 0 81 1819 APC2,RPS15,DAZAP1,GAMT,PCSK4,REEP6,C19ORF25
SE_02_097100494 chr19:1438358-1454689 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 494 3 530 30 0 60 1210 APC2,RPS15,DAZAP1,GAMT,PCSK4,REEP6,C19ORF25
SE_02_123500347 chr19:1438435-1453631 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 347 5 482 28 0 57 1160 APC2,RPS15,DAZAP1,GAMT,PCSK4,REEP6,C19ORF25
SE_02_117800385 chr19:1440051-1456409 Sample_02_1178 Brain GBM07 385 5 546 30 0 63 1308 APC2,RPS15,DAZAP1,GAMT,PCSK4,REEP6,C19ORF25
SE_02_110500615 chr19:1444284-1454082 Sample_02_1105 Brain NBL-S 615 1 319 24 0 41 864 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_027800133 chr19:1444576-1474639 Sample_02_0278 Retina FW24 133 3 1033 63 0 194 4561 C19ORF25,APC2,GAMT,ADAMTSL5,PCSK4,REEP6,RPS15,PLK5P,DAZAP1
SE_02_093100196 chr19:1444609-1454229 Sample_02_0931 Embryo H9 UTXKO 196 2 313 23 0 41 864 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_085701040 chr19:1444633-1454741 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 1040 2 332 23 0 41 864 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_041300014 chr19:1444663-1475487 Sample_02_0413 Brain GBM_2493 14 5 1063 65 0 196 4754 C19ORF25,APC2,GAMT,ADAMTSL5,PCSK4,REEP6,RPS15,PLK5P,DAZAP1
SE_02_118100230 chr19:1444673-1456886 Sample_02_1181 Brain GBM10 230 2 410 29 0 52 1312 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_093200219 chr19:1444721-1454207 Sample_02_0932 Embryo H9 WT_1 219 2 309 23 0 41 864 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_119500674 chr19:1444721-1475223 Sample_02_1195 Brain GBM29 674 8 1050 64 0 195 4695 APC2,C19ORF25,DAZAP1,GAMT,ADAMTSL5,RPS15,PLK5,PCSK4,REEP6
SE_02_119300537 chr19:1444726-1455545 Sample_02_1193 Brain GBM27 537 3 356 24 0 45 999 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_095800319 chr19:1444736-1454775 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 319 2 329 23 0 41 864 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_119600601 chr19:1444746-1456975 Sample_02_1196 Brain GBM32 601 4 411 29 0 58 1324 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_120200177 chr19:1444750-1456392 Sample_02_1202 Brain GBM38 177 4 386 24 0 50 1175 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_118800485 chr19:1444752-1455659 Sample_02_1188 Brain GBM18 485 5 358 24 0 45 1032 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_119400520 chr19:1444753-1475189 Sample_02_1194 Brain GBM28 520 11 1048 64 0 195 4687 APC2,C19ORF25,DAZAP1,GAMT,ADAMTSL5,RPS15,PLK5,PCSK4,REEP6
SE_02_117600362 chr19:1444754-1455552 Sample_02_1176 Brain GBM04 362 3 355 24 0 45 1000 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_121300775 chr19:1444767-1457057 Sample_02_1213 Brain GBM31 775 3 413 29 0 58 1348 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_117900440 chr19:1444776-1454424 Sample_02_1179 Brain GBM08 440 2 309 23 0 41 864 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_120400650 chr19:1444791-1456783 Sample_02_1204 Brain NB2 650 5 401 28 0 50 1278 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25,PLK5,C19orf25,MEX3D,ADAMTSL5
SE_02_096600805 chr19:1444792-1457809 Sample_02_0966 Brain H3.3K27M_JN29-BS3 805 6 434 33 0 62 1484 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_096900232 chr19:1444802-1456858 Sample_02_0969 Brain H3.3K27M_PL637 232 4 404 29 0 50 1300 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_118400337 chr19:1444810-1456179 Sample_02_1184 Brain GBM13 337 4 372 24 0 46 1118 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_121000176 chr19:1444812-1454463 Sample_02_1210 Brain GBM17 176 5 309 23 0 41 864 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_096200522 chr19:1444827-1453948 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 522 2 298 22 0 40 864 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_121100402 chr19:1444841-1455526 Sample_02_1211 Brain GBM21 402 3 353 24 0 45 994 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_120500523 chr19:1444846-1475186 Sample_02_1205 Brain NB3 523 10 1046 64 0 195 4687 APC2,C19ORF25,DAZAP1,GAMT,ADAMTSL5,RPS15,PLK5,PCSK4,REEP6,C19orf25,MEX3D
SE_02_119700803 chr19:1444854-1456284 Sample_02_1197 Brain GBM33 803 5 378 24 0 46 1146 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_093500468 chr19:1444863-1470754 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 468 6 872 55 0 189 3591 APC2,DAZAP1,GAMT,ADAMTSL5,RPS15,PCSK4,REEP6,C19ORF25
SE_02_119800493 chr19:1444874-1454278 Sample_02_1198 Brain GBM34 493 4 305 23 0 41 864 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_119000203 chr19:1444889-1456160 Sample_02_1190 Brain GBM24 203 5 370 24 0 46 1108 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_095600643 chr19:1444927-1455671 Sample_02_0956 Brain IDH1_2658 643 5 354 24 0 45 1034 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_097800429 chr19:1444930-1454441 Sample_02_0978 Brain 2168_IDH1 429 4 305 23 0 41 864 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_118900139 chr19:1444954-1455340 Sample_02_1189 Brain GBM22 139 6 344 24 0 45 951 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_118700988 chr19:1444961-1454506 Sample_02_1187 Brain GBM16 988 3 306 23 0 41 864 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_083800608 chr19:1444966-1452765 Sample_02_0838 Embryo hNPCs_WT 608 4 231 19 0 23 576 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_101300583 chr19:1444975-1455371 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 583 5 345 24 0 45 958 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_095500168 chr19:1445107-1455679 Sample_02_0955 Brain IDH1_2469 168 4 348 24 0 45 1039 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_100500226 chr19:1445413-1453937 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 226 4 284 22 0 40 864 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_078500112 chr19:1445422-1453696 Sample_02_0785 Brain 2097 112 4 269 21 0 39 835 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_101400255 chr19:1445424-1453370 Sample_02_1014 Brain Lateral temporal lobe_7T_AD 255 2 245 21 0 31 738 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_100600167 chr19:1445430-1453661 Sample_02_1006 Brain Lateral temporal lobe_13T_Old 167 4 264 21 0 38 830 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_079000036 chr19:1445446-1453587 Sample_02_0790 Brain DI28 36 3 261 21 0 37 808 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_093300128 chr19:1445474-1453428 Sample_02_0933 Embryo H7 UTXKO 128 2 252 21 0 31 755 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_093400246 chr19:1445493-1453699 Sample_02_0934 Embryo H7-WT 246 3 268 21 0 39 837 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_101200068 chr19:1446301-1453359 Sample_02_1012 Brain Lateral temporal lobe_8T_AD 68 3 223 20 0 31 734 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_078600023 chr19:1446304-1452627 Sample_02_0786 Brain 2489 23 2 190 18 0 23 555 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_100300113 chr19:1446320-1453513 Sample_02_1003 Brain Lateral temporal lobe_19T_Young 113 3 233 20 0 32 782 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_02_117300408 chr19:1448859-1457534 Sample_02_1173 Brain GBM01 408 1 320 29 0 54 1447 APC2,DAZAP1,GAMT,RPS15,PCSK4,REEP6,C19ORF25
SE_01_002200188 chr19:1453138-1471621 Sample_01_0022 Prostate C4-2B 188 3 647 38 0 160 3143 APC2,ADAMTSL5,PCSK4,REEP6,RPS15,C19ORF25,DAZAP1
Genomic distribution of SEs associated with APC2
Genome Browser

The strength of the tissue affected by the gene

Expression of APC2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)