SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000204310
Gene: AGPAT1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr6:32168212-32178096 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_003900442 chr6:32173596-32180693 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 442 1 139 18 14 86 822 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_01_005000281 chr6:32174726-32179763 Sample_01_0050 Embryo neural-cell 281 1 95 13 10 68 641 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_02_012500579 chr6:32174847-32179687 Sample_02_0125 Embryo Embryonic-stem-cells_Primed 579 1 93 12 10 65 629 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_02_043300543 chr6:32175083-32180701 Sample_02_0433 Lung NCI-H1299_EGFP-NEO_reporter_cells_DAC 543 1 115 17 13 86 823 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_02_003901006 chr6:32175165-32179594 Sample_02_0039 Embryo AFG 1006 1 88 12 10 64 615 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_02_004900424 chr6:32175196-32179508 Sample_02_0049 Embryo endodermal CyT49_GTtoH 424 1 88 12 10 64 600 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_00_004300573 chr6:32175196-32180374 Sample_00_0043 Stomach stomach_96d 573 1 109 16 12 80 763 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_02_025800509 chr6:32175250-32179777 Sample_02_0258 Lung NCI-H1299_EGFP-NEO_reporter_cells_DMSO 509 1 92 13 10 67 647 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_00_002001481 chr6:32175294-32179609 Sample_00_0020 Large intestine large-intestine_108d 1481 1 87 12 10 64 617 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_00_002500625 chr6:32175334-32179591 Sample_00_0025 Muscle of leg muscle-of-leg 625 1 87 12 10 64 614 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_02_004800412 chr6:32175361-32179909 Sample_02_0048 Embryo endodermal CyT49_HE 412 1 95 13 10 70 668 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_00_003800487 chr6:32175364-32179329 Sample_00_0038 Spinal cord spinal-cord_108d 487 1 82 12 9 64 584 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_02_001400450 chr6:32175367-32179244 Sample_02_0014 Liver HepG2_shBRG1 450 1 81 12 9 64 584 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_02_004001012 chr6:32175398-32179274 Sample_02_0040 Embryo PFG 1012 1 81 12 9 64 584 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_00_003601257 chr6:32175542-32179650 Sample_00_0036 Small intestine small-intestine_108days 1257 1 84 11 10 60 620 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_00_001800382 chr6:32175946-32179549 Sample_00_0018 Dermal fibroblasts iPS-18axian 382 1 74 10 10 51 490 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_02_004500288 chr6:32175968-32179404 Sample_02_0045 Embryo endodermal CyT49_ES_D7 288 1 73 10 10 48 465 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_02_003601475 chr6:32176105-32179273 Sample_02_0036 Embryo H7 1475 1 67 10 9 47 415 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_02_004600216 chr6:32176114-32179454 Sample_02_0046 Embryo endodermal CyT49_ES_D10 216 1 72 10 10 45 424 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_02_004400453 chr6:32176119-32179172 Sample_02_0044 Embryo endodermal CyT49_ES_D5 453 1 65 9 8 43 411 AGPAT1,RNF5,RNF5P1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
SE_00_001300426 chr6:32176152-32178530 Sample_00_0013 Embryo H9 426 1 51 7 6 32 341 RNF5,RNF5P1,AGPAT1,ATF6B,FKBPL,PPT2,EGFL8,PRRT1,NOTCH4,GPSM3,AGER,PBX2,LOC100507547
Genomic distribution of SEs associated with AGPAT1
Genome Browser

The strength of the tissue affected by the gene

Expression of AGPAT1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)