SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000131584
Gene: ACAP3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:1292390-1309609 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_010600037 chr1:1284323-1313239 Sample_02_0106 Skin NHEK_M 37 6 1375 107 1 180 5570 SCNN1D,PUSL1,ACAP3,CPSF3L,UBE2J2,GLTPD1,TAS1R3,FAM132A,MXRA8,DVL1
SE_02_027500129 chr1:1284487-1315824 Sample_02_0275 Retina FW14 129 4 1495 109 1 205 6135 SCNN1D,PUSL1,ACAP3,CPSF3L,UBE2J2,GLTPD1,TAS1R3,FAM132A,MXRA8,DVL1
SE_02_025400103 chr1:1284742-1310573 Sample_02_0254 Neuroblastoma IMR5-75 103 3 1196 101 0 149 4933 SCNN1D,PUSL1,ACAP3,UBE2J2,GLTPD1,TAS1R3,FAM132A,MXRA8,DVL1,CPSF3L
SE_02_035200544 chr1:1289851-1320024 Sample_02_0352 Colon HCT116 544 6 1413 103 1 216 5966 SCNN1D,PUSL1,ACAP3,CPSF3L,UBE2J2,GLTPD1,TAS1R3,FAM132A,MXRA8,DVL1
SE_02_027700087 chr1:1289931-1310988 Sample_02_0277 Retina FW18 87 2 987 83 0 153 4312 SCNN1D,PUSL1,ACAP3,UBE2J2,GLTPD1,TAS1R3,FAM132A,MXRA8,DVL1,CPSF3L
SE_02_015800313 chr1:1290098-1320448 Sample_02_0158 Brain U87_EGFRvIII_erlotinib 313 3 1407 104 1 216 6061 SCNN1D,PUSL1,ACAP3,CPSF3L,UBE2J2,GLTPD1,TAS1R3,FAM132A,MXRA8,DVL1
SE_02_027800081 chr1:1290363-1310169 Sample_02_0278 Retina FW24 81 2 887 80 0 142 4028 SCNN1D,PUSL1,ACAP3,UBE2J2,GLTPD1,TAS1R3,FAM132A,MXRA8,DVL1,CPSF3L
SE_01_002100332 chr1:1290855-1309241 Sample_01_0021 Skin bipolar-neuron 332 2 777 70 0 135 3653 SCNN1D,PUSL1,ACAP3,UBE2J2,GLTPD1,TAS1R3,FAM132A,MXRA8,DVL1,CPSF3L
SE_02_025200096 chr1:1294783-1310302 Sample_02_0252 Neuroblastoma IMR5-75-shMYCN-MYCN_high 96 2 635 55 0 111 2903 ACAP3,PUSL1,SCNN1D,UBE2J2,GLTPD1,TAS1R3,FAM132A,MXRA8,DVL1,CPSF3L
SE_02_096300278 chr1:1295361-1310538 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 278 1 628 51 0 111 2873 ACAP3,PUSL1,MIR6726,TAS1R3,FAM132A,MXRA8,SCNN1D,MIR6727,DVL1,CPTP,MIR6808,UBE2J2,CPSF3L
SE_02_097000114 chr1:1296024-1310501 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 114 1 602 50 0 100 2682 ACAP3,PUSL1,MIR6726,TAS1R3,FAM132A,MXRA8,SCNN1D,MIR6727,DVL1,CPTP,MIR6808,UBE2J2,CPSF3L
SE_02_121200093 chr1:1296979-1307729 Sample_02_1212 Brain GBM30 93 1 431 41 0 64 1831 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_119000302 chr1:1297201-1308505 Sample_02_1190 Brain GBM24 302 6 430 40 0 78 1949 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_107800577 chr1:1297691-1307872 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 577 4 395 38 0 67 1845 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_025100296 chr1:1297779-1310042 Sample_02_0251 Autonomic ganglia SH-SY5Y-MYCN-OFF 296 2 479 43 0 93 2315 ACAP3,PUSL1,SCNN1D,UBE2J2,GLTPD1,TAS1R3,MXRA8,DVL1,CPSF3L
SE_02_025300184 chr1:1297791-1310172 Sample_02_0253 Brain BE2C_DMSO 184 2 486 44 0 93 2340 ACAP3,PUSL1,SCNN1D,UBE2J2,GLTPD1,TAS1R3,MXRA8,DVL1,CPSF3L
SE_02_027600283 chr1:1297800-1309532 Sample_02_0276 Retina FW15 283 3 444 41 0 92 2173 ACAP3,PUSL1,SCNN1D,UBE2J2,GLTPD1,TAS1R3,MXRA8,DVL1,CPSF3L
SE_02_097800671 chr1:1297853-1306624 Sample_02_0978 Brain 2168_IDH1 671 3 327 30 0 57 1716 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_097400125 chr1:1297872-1309813 Sample_02_0974 Brain H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells 125 3 451 41 0 91 2228 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_030400418 chr1:1298186-1310318 Sample_02_0304 Neuroblastoma N206 418 2 469 43 0 86 2287 ACAP3,PUSL1,SCNN1D,UBE2J2,GLTPD1,TAS1R3,MXRA8,DVL1,CPSF3L
SE_02_100400182 chr1:1298201-1306054 Sample_02_1004 Brain Lateral temporal lobe_10T_Old 182 3 286 24 0 50 1607 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_150000586 chr1:1298376-1307884 Sample_02_1500 Brain KELLY_untreat 586 2 354 36 0 60 1670 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_042100315 chr1:1298439-1310061 Sample_02_0421 Brain BE2C_3 315 2 441 41 0 86 2155 ACAP3,PUSL1,SCNN1D,UBE2J2,GLTPD1,TAS1R3,MXRA8,DVL1,CPSF3L
SE_02_007200053 chr1:1298443-1306798 Sample_02_0072 Lung NCI-H82_DMSO 53 2 311 29 0 56 1560 ACAP3,SCNN1D,UBE2J2,GLTPD1,TAS1R3,PUSL1,DVL1,CPSF3L
SE_02_101400243 chr1:1298625-1305901 Sample_02_1014 Brain Lateral temporal lobe_7T_AD 243 3 260 22 0 48 1431 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_069400217 chr1:1298740-1307856 Sample_02_0694 Lung NCI-H82_no infection 217 3 334 35 0 58 1550 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_110900332 chr1:1298835-1310739 Sample_02_1109 Brain SK-N-FI 332 3 468 41 0 85 2213 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_027900097 chr1:1299287-1307852 Sample_02_0279 Retina RB 97 4 314 34 0 55 1404 ACAP3,SCNN1D,UBE2J2,GLTPD1,TAS1R3,PUSL1,DVL1,CPSF3L
SE_02_123900622 chr1:1299475-1307831 Sample_02_1239 Skin Waga_virus_positive 622 4 306 34 0 55 1340 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_117600264 chr1:1301330-1310026 Sample_02_1176 Brain GBM04 264 1 341 36 0 61 1507 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_108200451 chr1:1301382-1309841 Sample_02_1082 Retina retina 451 1 323 34 0 61 1456 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_119600277 chr1:1301417-1310593 Sample_02_1196 Brain GBM32 277 1 369 37 0 61 1664 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_119700443 chr1:1301445-1310178 Sample_02_1197 Brain GBM33 443 1 347 37 0 61 1545 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_085700378 chr1:1301448-1310461 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 378 1 362 37 0 61 1626 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_117300514 chr1:1301449-1307908 Sample_02_1173 Brain GBM01 514 1 246 31 0 36 1029 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_110600256 chr1:1301469-1307883 Sample_02_1106 Brain NGP 256 1 246 31 0 35 1024 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_01_006100140 chr1:1301469-1311944 Sample_01_0061 Prostate RWPE1 140 1 456 39 0 69 1985 ACAP3,PUSL1,CPSF3L,SCNN1D,UBE2J2,GLTPD1,TAS1R3,MXRA8,DVL1
SE_02_096900215 chr1:1301531-1309582 Sample_02_0969 Brain H3.3K27M_PL637 215 1 308 33 0 60 1391 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_096200113 chr1:1301534-1310621 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 113 1 370 36 0 61 1665 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_085400201 chr1:1301588-1309633 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 201 1 306 33 0 60 1405 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_121300810 chr1:1301603-1310501 Sample_02_1213 Brain GBM31 810 1 359 36 0 61 1640 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_029300473 chr1:1301614-1311575 Sample_02_0293 Pancreatic L3-6_4SC-202 473 1 429 37 0 68 1908 ACAP3,PUSL1,SCNN1D,UBE2J2,GLTPD1,TAS1R3,MXRA8,DVL1,CPSF3L
SE_02_079400118 chr1:1301640-1309407 Sample_02_0794 Brain 1552 118 1 296 33 0 58 1352 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_110800144 chr1:1301709-1307885 Sample_02_1108 Brain SK-N-BE_2_-C 144 1 241 29 0 35 1024 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_088601710 chr1:1301762-1307820 Sample_02_0886 Skin foreskin_ p63KLF4 1710 1 240 29 0 34 1011 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_051700833 chr1:1301994-1307910 Sample_02_0517 Esophagus TE5 833 1 232 29 0 36 969 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_153900509 chr1:1302549-1310104 Sample_02_1539 Nasopharyngeal C666-1 509 1 310 31 0 59 1403 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_154100968 chr1:1302576-1307906 Sample_02_1541 Nasopharyngeal HNE1 968 1 214 26 0 34 899 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_00_001100816 chr1:1302688-1310895 Sample_00_0011 Esophagus esophagus 816 1 360 32 0 60 1606 ACAP3,PUSL1,SCNN1D,UBE2J2,GLTPD1,TAS1R3,MXRA8,DVL1,CPSF3L
SE_02_050500668 chr1:1302767-1308492 Sample_02_0505 Esophagus KYSE70_1 668 1 219 26 0 44 953 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_051600665 chr1:1302767-1308492 Sample_02_0516 Esophagus KYSE70 665 1 219 26 0 44 953 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_035800335 chr1:1302817-1310838 Sample_02_0358 Colon LS180 335 1 344 31 0 60 1562 ACAP3,PUSL1,SCNN1D,UBE2J2,GLTPD1,TAS1R3,MXRA8,DVL1,CPSF3L
SE_02_103000292 chr1:1302839-1312756 Sample_02_1030 Colon DKO 292 1 459 35 1 83 2015 ACAP3,PUSL1,MIR6727,CPSF3L,MXRA8,SCNN1D,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2
SE_02_110700701 chr1:1302844-1307864 Sample_02_1107 Brain SK-N-AS 701 1 197 25 0 33 849 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_119300910 chr1:1302944-1310023 Sample_02_1193 Brain GBM27 910 1 282 30 0 59 1314 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_007500214 chr1:1302969-1309583 Sample_02_0075 Autonomic ganglia kelly_DMSO_3h 214 1 255 28 0 57 1195 ACAP3,PUSL1,SCNN1D,UBE2J2,GLTPD1,TAS1R3,MXRA8,DVL1,CPSF3L
SE_02_095800348 chr1:1302985-1310072 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 348 1 284 30 0 58 1330 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_121000305 chr1:1303004-1308433 Sample_02_1210 Brain GBM17 305 1 202 26 0 40 879 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_095500189 chr1:1303050-1309383 Sample_02_0955 Brain IDH1_2469 189 1 243 28 0 55 1131 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_096800427 chr1:1303160-1309974 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 427 1 269 27 0 58 1246 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_118900327 chr1:1303215-1308490 Sample_02_1189 Brain GBM22 327 1 193 25 0 42 835 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_097100733 chr1:1303258-1309984 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 733 1 265 27 0 53 1231 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_114800149 chr1:1303326-1309746 Sample_02_1148 Kidney WT 9-12_control_vehicle 149 1 245 27 0 53 1155 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_119800924 chr1:1303568-1307885 Sample_02_1198 Brain GBM34 924 1 168 23 0 27 706 ACAP3,SCNN1D,PUSL1,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_01_011400325 chr1:1303780-1311811 Sample_01_0114 Colon HCT116_encode 325 1 357 31 0 60 1632 ACAP3,PUSL1,CPSF3L,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2
SE_02_027400628 chr1:1303786-1310207 Sample_02_0274 Endometriosis hTERT_KD 628 1 259 29 0 53 1237 ACAP3,PUSL1,SCNN1D,UBE2J2,GLTPD1,TAS1R3,MXRA8,DVL1,CPSF3L
SE_02_128001106 chr1:1304027-1310123 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1106 1 241 26 0 53 1193 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_148000895 chr1:1304139-1310466 Sample_02_1480 Bone MHH-ES-1 895 1 252 27 0 52 1253 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_04_000101145 chr1:1304160-1310621 Sample_04_0001 Blood heat shocked K562 1145 1 261 27 0 52 1286 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_001500688 chr1:1304192-1310926 Sample_02_0015 Liver HepG2_shNS 688 1 290 28 0 54 1353 ACAP3,PUSL1,SCNN1D,UBE2J2,GLTPD1,TAS1R3,MXRA8,DVL1,CPSF3L
SE_02_158401355 chr1:1304208-1309887 Sample_02_1584 Brain U87 GBM_Mock 1355 1 216 24 0 52 1080 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_02_122600206 chr1:1304286-1309830 Sample_02_1226 Bone marrow RPMI-8226 206 1 208 24 0 52 1030 ACAP3,PUSL1,MXRA8,SCNN1D,MIR6727,TAS1R3,DVL1,MIR6726,MIR6808,CPTP,UBE2J2,CPSF3L
SE_01_002200237 chr1:1304450-1310763 Sample_01_0022 Prostate C4-2B 237 1 262 26 0 53 1235 ACAP3,PUSL1,SCNN1D,UBE2J2,GLTPD1,TAS1R3,MXRA8,DVL1,CPSF3L
Genomic distribution of SEs associated with ACAP3
Genome Browser

The strength of the tissue affected by the gene

Expression of ACAP3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)