About Enhancer
| Enhancer ID: | E_02_255 | |
| Enhancer symbol: | -- | |
| Species: | Mouse | |
| Position : | chr17:85795937-85796217   |
|
| Biosample name: | Metanephric Mesenchymal (MM) cells | |
| Experiment class : | Low+High throughput |
| Enhancer type: | Enhancer | |
| Disease: | -- | |
| DO: | -- | |
| Mesh: | -- | |
| Distance from TSS: | >2KB | |
| Pubmed ID: | 30416088 |
| Enhancer experiment: | ChIP-seq | |
| Enhancer experiment description: | We conducted comprehensive analyses of the chromatin signature and transcriptome by RNA_x0002_seq and ChIP-seq.We found seventeen lncRNAs that were expressed specifically in MM cells with an active chromatin signature, while remaining silenced in a bivalent chromatin state in non-MM cells.Out of these MM specific lncRNAs, we identified a lncRNA, Gm29418, in a distal enhancer region of Six2,a key regulatory gene of MM cells. |
About Target gene
| Target gene : | Six2(Six2) | |
| Strong evidence: | -- | |
| Less strong evidence: | ChIP-seq,RNA-seq,qRT-PCR | |
| Target gene experiment description: | We conducted comprehensive analyses of the chromatin signature and transcriptome by RNA_x0002_seq and ChIP-seq.We found seventeen lncRNAs that were expressed specifically in MM cells with an active chromatin signature, while remaining silenced in a bivalent chromatin state in non-MM cells.Out of these MM specific lncRNAs, we identified a lncRNA, Gm29418, in a distal enhancer region of Six2,a key regulatory gene of MM cells. |
About TF
| TF name : | -- | |
| TF experiment: | -- | |
| TF experiment description: | -- |
About Function
| Enhancer function : | -- |
| Enhancer function experiment: | -- |
| Enhancer function experiment description: |
-- |
About SNP
| SNP ID: | -- | |
| SNP position: | -- |
| SNP experiment: | -- |
Enhancer associated network
The number on yellow line represents the distance between enhancer and target gene
