About Enhancer
| Enhancer ID: | E_01_0794 |
| Species: | human |
| Position : | chr19:41447287-41449287   |
| Biosample name: | |
| Experiment class : | High+Lowthroughput |
| Enhancer type: | Enhancer |
| Disease: | Prostatic cancer |
| Pubmed ID: | 30033362 |
| Enhancer experiment: | RNA pull-down (chirp) assay, RT qPCR, Western blot, RNA SEQ, eQTL analysis, crispri assay, statistical analysis |
| Enhancer experiment description: | We showed that rs11672691 maps to the promoter of a short isoform of long noncoding RNA PCAT19 (PCAT19-short), which is in the third intron of the long isoform (PCAT19-long). |
About Target gene
| Target gene : | PCAT19 |
| Strong evidence: | qRT-PCR,qPCR,ChIP,3C |
| Less strong evidence: | RNA-Seq |
| Target gene experiment description: | We showed that rs11672691 maps to the promoter of a short isoform of long noncoding RNA PCAT19 (PCAT19-short), which is in the third intron of the long isoform (PCAT19-long). |
About TF
| TF name : | -- |
| TF experiment: | RNA pull-down (ChIRP) assay,RT-qPCR,Western blot,RNA-seq,eQTL??,CRISPRi assay,???? |
| TF experiment description: | We showed that rs11672691 maps to the promoter of a short isoform of long noncoding RNA PCAT19 (PCAT19-short), which is in the third intron of the long isoform (PCAT19-long). |
About Function
| Enhancer function : | We showed that rs11672691 maps to the promoter of a short isoform of long noncoding RNA PCAT19 (PCAT19-short), which is in the third intron of the long isoform (PCAT19-long). |
| Enhancer function experiment: | Immunohistochemical staining |
| Enhancer function experiment description: |
We showed that rs11672691 maps to the promoter of a short isoform of long noncoding RNA PCAT19 (PCAT19-short), which is in the third intron of the long isoform (PCAT19-long). |
About SNP
| SNP ID: | rs11672691,rs887391,rs35148638,rs78943174 |
Upstream Pathway Annotation of TF
| GeneName | Pathway Name | Source | Gene Number |
|---|
Enhancer associated network
The number on yellow line represents the distance between enhancer and
target gene