About Enhancer
| Enhancer ID: | E_01743 |
| Species: | Homo sapiens |
| Position : | chr12:47471429-47487762   |
| Year: | 2017 |
| Title: | Harnessing BET Inhibitor Sensitivity Reveals AMIGO2 as a Melanoma Survival Gene. |
| Genome Build: | hg19 |
| Enhancer Type: | Super-enhancer |
| Condition: | Disease |
| Disease Name: | melanoma |
| PMID: | 29149598 |
| MONDO: | MONDO:0005105 |
| Tissue: | skin |
| Tissue Ontology ID: | UBERON:0002097 |
| Cell Source: | SKmel147 |
| Cell Type: | malignant cell |
| Cell Ontology ID: | CL:0001064 |
| Experiment Type: | Enhancer activity assay; TF-binding/chromatin assay; Endogenous enhancer perturbation; Disease-associated enhancer analysis |
| High Throughput Method: | ChIP-seq; ATAC-seq |
| Low Throughput Method: | Luciferase reporter assay; Reporter assay; CRISPR-Cas9 targeted editing/deletion; ChIP-qPCR/ChIP; Western blot |
About Target Gene
| Target gene : | AMIGO2 |
About TF
| TF name : | TEAD4 |
About Regulatory State
| Regulatory State : | Active |
Upstream Pathway Annotation of TF
| GeneName | Pathway Name | Source | Gene Number |
|---|---|---|---|
| TEAD4 | PPARA activates gene expression | reactome | 113 |
| TEAD4 | YAP1- and WWTR1 (TAZ)-stimulated gene expression | reactome | 29 |
| TEAD4 | Hs_VEGFA-VEGFR2_Signaling_Pathway_WP3888_90000 | wikipathways | 153 |
Enhancer Associated Network
Overlapping Enhancers (hg19)
9 found
| Enhancer ID | Position | Tissue | Cell | Disease |
|---|---|---|---|---|
| E_01742 | chr12:47471429-47487762 | skin | malignant cell | melanoma |
| E_01732 | chr12:47483742-47503742 | skin | melanoma cell line; primary/short-term melanoma culture | metastatic melanoma |
| E_01733 | chr12:47483742-47503742 | skin | melanoma cell line; primary/short-term melanoma culture | metastatic melanoma |
| E_01734 | chr12:47483742-47503742 | skin | melanoma cell line; primary/short-term melanoma culture | metastatic melanoma |
| E_01735 | chr12:47483742-47503742 | skin | melanoma cell line; primary/short-term melanoma culture | metastatic melanoma |
| E_01736 | chr12:47483742-47503742 | skin | melanoma cell line; primary/short-term melanoma culture | metastatic melanoma |
| E_01737 | chr12:47483742-47503742 | skin | melanoma cell line; primary/short-term melanoma culture | metastatic melanoma |
| E_01738 | chr12:47483742-47503742 | skin | melanoma cell line; primary/short-term melanoma culture | metastatic melanoma |
| E_01739 | chr12:47483742-47503742 | skin | melanoma cell line; primary/short-term melanoma culture | metastatic melanoma |
Expression of Target Genes for the Enhancer